Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008251.1

Orthogroup ID

OG0005860

Physical Location & Seq

Genomic Coordinates Forward (+)

16324 .. 21825

Gene Structure 5502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008251.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

atgtccgacgtcggcgaaagcgagcccgctccgctaaagcccaatgggcccgtgcgctccgaggagtccatgtcccccatgcagttcaccacctccgccgccgccaaaatcgcctcccagcctctcccctcctacgacccctccgtctggggcgtcctcaccgccatctcctccaacgcccgcaaacgcccccagggcataaatatgctattgacttccattgagcatcaaattggacgatgcgtggccgataagcggttccagattgagtcgactgccattagtgcaaatcactgcaagatatataggaagaaggttgatgaagatgccaagtctgcatcaatcttcctcaaggacacaagcacgaatgggacgtatctcaactgggagaagctcacaaaagttggccctgaagttgaagtacgtcatggcgacattatctcgcttgctgcacctcctcagcatggtgttgcatttgcatttgtatttagagaagttgtctccaatgccagtacagctggtgcttttgcaaagagaaaagcagatgagtttgctggtgagaacaagagactgaaaggtattggcattggggctcctgagggtccaatatctcttgatgattttcgaagtcttcaacggtccaacacggaattgaggaagcaattagaaagtcaagtcattacaattgataggttgcgcagtgacaatcgtttggctgttgagcatcatgaaaatgaaaaaagagaactgaaagaatcagttgcaaaaccttaccttgatcaactgaaagagttgcatcgtattgtggaggttaaacagaaggaggtggtagagatcaataagatatgtgcagaacaaagatatgctctcgaagaccttaatgaaaggcttacagcttctgtgcagtcatgcactgaagcaaatgaaataatgaatactcagaaagcttctctggctgagctcaaggcacagttggatgaagagcgagatcagagaagagaagagcgagaaaaggctgcagtagatctaaaagcagcagtacataaagctcaatcagatgctcaagaggaactaaaacaatattctgatgctgccacaagacgagagagagagcaacaagaagtaattaacaagcttcaggaatcagagagagagacgtgtttactaatagaaaacttgagaacaaaattggaagacactaggcaaaagttggtagtctctgaaaataaaaatcgccagctagacacccaagtttgcgaagagcagtcaacctctgatagtcgaaaaaagagagtggaagaacttgaacatgagatgaaaggattgaggaaagagcttgactgtgaaaaggcagctcgagaagaagcatgggctaaagtttctgcccttgaactagagatgaattctgcaatgcaagatcttgattttgagagacgaaaattgaaggctgctagagaaagaataatgcttcgggagacacaactaagggcattttattccacaactgaggagatttctgtactgtttgctaaacagcaggaacagttgaaatcgatgcagaggacactggaagatgaggaaaattatgataacacatcagttgattttgacctcaatgttattggggatacaactggaactgaaggcagagatgataaagtaatcaggtaccgtagaaacaacactgctagggcagggtcagcaacaacaccgcagaggtccaatggaaatcaaattggaacatctagtgaagaagtcagtgttactgagaagcatgactgtgatatcagaagcgaacaaggtgaacataccgaagaggcagaattcaccagtgcaaaccatggtgtcaagggtggctttggttctgacattgatggtattggtacaggacctgttatggagggagatggcattggcaccgagcatgttcctgaaactgaaggcattgacactgagcatgttcctgaaacggagagccctggaatgaatggtgacgaaaatattgatttgaacaagattgccactatggaagaggatacaatgcaaattgatgaggaaggccatgtgcaaggaaatgatgagaaagttgcaatgatttttcagcagcgtcactctcaatcaaacacaatcaggacagcagaccttatagcttctgaaactattggtagctgggcttgtagcacagccccttctgtccatggagaaaatggatctccaagaagtagagacaacgaggaaggtgctgctgcaccacacgatccgattgacagggtggctgagagccaaagtactccatcttctgagactgctgccacaagacggaatcgtgagcgtcaagcactgagtgaaatgattgggatagttgctcccgacttaaaagaacagttcggtaatgtggacgatagttatgataatgagagaagaaaacaggcttctacatctgactcagataccgagagttgtacgaacagtgaagataataacaaagttgaagctgccgaaggtgattcaatttcagactcagagaccgagggtagtgaacgggttgataacgcaatggacgaagctggtgtggatacagaagaagattccgttggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

866

Amino Acids

96.45

Weight (kDa)

4.83

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45460 AT2G45460 AT2G45460 AT2G45460
fragaria_vesca	FvH4_7g12090 FvH4_7g12090 FvH4_7g12090 FvH4_7g12090
malus_domestica	MD02G1201400.v1.1
prunus_persica	Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1
pyrus_communis	pycom02g16480
rosa_chinensis	RchiOBHm_Chr1g0350831
rosa_laevigata	RLG00000028451
rosa_multiflora	Rmu_sc0006200.1_g000006 Rmu_sc0008251.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304480
rosa_rugosa	Rorug01G0214400 Rorug01G0214500
rosa_samantha	Rh1AG228900 Rh1BG198900 Rh1CG213700 Rh1DG226800
rosa_wichuraiana	Rw1G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	12
Acc16I	TGCGCA	1 cut(s)	698
Acc65I	GGTACC	1 cut(s)	1668
AccB1I	GGYRCC	2 cut(s)	1668, 1916
AccBSI	CCGCTC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	272
AciI	CCGC	9 cut(s)	27, 32, 96, 99, 102, 162, 181, 256, 1712
AclWI	GGATC	2 cut(s)	2218, 2252
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	1402, 1823
AcuI	CTGAAG	5 cut(s)	432, 936, 1121, 1662, 1959
AcyI	GRCGYC	2 cut(s)	9, 153
AdeI	CACNNNGTG	1 cut(s)	2345
AfaI	GTAC	8 cut(s)	423, 514, 1041, 1521, 1670, 1885, 2290, 2464
AfiI	CCNNNNNNNGG	4 cut(s)	147, 255, 464, 2319
AflIII	ACRYGT	1 cut(s)	1157
AgsI	TTSAA	9 cut(s)	419, 635, 1307, 1391, 1444, 1549, 2011, 2492, 2511
AjiI	CACGTC	1 cut(s)	1158
AjnI	CCWGG	2 cut(s)	192, 1978
AjuI	GAANNNNNNNTTGG	1 cut(s)	2577
Alw21I	GWGCWC	1 cut(s)	963
Alw26I	GTCTC	9 cut(s)	505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
AlwI	GGATC	2 cut(s)	2218, 2252
AlwNI	CAGNNNCTG	2 cut(s)	899, 1892
Ama87I	CYCGRG	1 cut(s)	1356
AoxI	GGCC	4 cut(s)	47, 246, 406, 2059
ApaI	GGGCCC	1 cut(s)	51
ApoI	RAATTY	2 cut(s)	1402, 1823
Asp718I	GGTACC	1 cut(s)	1668
AspLEI	GCGC	2 cut(s)	57, 699
AspS9I	GGNCC	7 cut(s)	47, 48, 407, 602, 639, 1719, 1889
AsuHPI	GGTGA	7 cut(s)	79, 151, 569, 1814, 1819, 2003, 2516
AsuII	TTCGAA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	1356
AvaII	GGWCC	4 cut(s)	602, 639, 1719, 1889
AxyI	CCTNAGG	1 cut(s)	597
BaeGI	GKGCMC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	1668, 1916
BanII	GRGCYC	5 cut(s)	27, 51, 595, 963, 1979
BarI	GAAGNNNNNNTAC	4 cut(s)	405, 437, 2281, 2313
BbsI	GAAGAC	3 cut(s)	623, 879, 1200
Bbv12I	GWGCWC	1 cut(s)	963
BbvCI	CCTCAGC	1 cut(s)	459
BccI	CCATC	4 cut(s)	173, 1868, 1901, 2302
BcgI	CGANNNNNNTGC	2 cut(s)	2222, 2256
BciT130I	CCWGG	2 cut(s)	194, 1980
BciVI	GTATCC	3 cut(s)	1621, 2029, 2569
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	9 cut(s)	505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
BfaI	CTAG	6 cut(s)	1200, 1241, 1394, 1452, 1689, 1746
BfmI	CTRYAG	1 cut(s)	1017
BfuI	GTATCC	3 cut(s)	1621, 2029, 2569
BglI	GCCNNNNNGGC	2 cut(s)	46, 195
BglII	AGATCT	2 cut(s)	1024, 1417
BlpI	GCTNAGC	1 cut(s)	957
BmcAI	AGTACT	1 cut(s)	2290
Bme1390I	CCNGG	2 cut(s)	194, 1980
Bme18I	GGWCC	4 cut(s)	602, 639, 1719, 1889
BmeT110I	CYCGRG	1 cut(s)	1356
BmgBI	CACGTC	1 cut(s)	1158
BmgT120I	GGNCC	7 cut(s)	47, 48, 407, 602, 639, 1719, 1889
BmiI	GGNNCC	6 cut(s)	49, 260, 594, 603, 1670, 1918
BmrFI	CCNGG	2 cut(s)	194, 1980
BmrI	ACTGGG	1 cut(s)	394
BmsI	GCATC	9 cut(s)	230, 235, 316, 347, 733, 805, 1048, 1078, 1545
BmuI	ACTGGG	1 cut(s)	394
BpiI	GAAGAC	3 cut(s)	623, 879, 1200
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	957
Bpu14I	TTCGAA	1 cut(s)	625
BpuEI	CTTGAG	4 cut(s)	335, 947, 1047, 1198
Bsa29I	ATCGAT	1 cut(s)	1553
BsaHI	GRCGYC	2 cut(s)	9, 153
BsaI	GGTCTC	1 cut(s)	2519
BsaJI	CCNNGG	7 cut(s)	60, 192, 193, 1840, 1978, 2197, 2529
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 125, 155
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 255, 464, 2319
Bse1I	ACTGG	5 cut(s)	389, 510, 1572, 1639, 1830
Bse21I	CCTNAGG	1 cut(s)	597
Bse3DI	GCAATG	3 cut(s)	1416, 2097, 2562
BseBI	CCWGG	2 cut(s)	194, 1980
BseCI	ATCGAT	1 cut(s)	1553
BseDI	CCNNGG	7 cut(s)	60, 192, 193, 1840, 1978, 2197, 2529
BseGI	GGATG	1 cut(s)	982
BseLI	CCNNNNNNNGG	4 cut(s)	147, 255, 464, 2319
BseMI	GCAATG	3 cut(s)	1416, 2097, 2562
BseNI	ACTGG	5 cut(s)	389, 510, 1572, 1639, 1830
BseRI	GAGGAG	4 cut(s)	77, 160, 447, 1523
BseSI	GKGCMC	1 cut(s)	51
BseYI	CCCAGC	2 cut(s)	117, 2169
BsgI	GTGCAG	4 cut(s)	435, 870, 923, 2232
BshFI	GGCC	4 cut(s)	49, 248, 408, 2061
BshNI	GGYRCC	2 cut(s)	1668, 1916
BshVI	ATCGAT	1 cut(s)	1553
BsiHKAI	GWGCWC	1 cut(s)	963
BsiHKCI	CYCGRG	1 cut(s)	1356
BslFI	GGGAC	2 cut(s)	58, 385
BslI	CCNNNNNNNGG	4 cut(s)	147, 255, 464, 2319
BsmAI	GTCTC	9 cut(s)	505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
BsmBI	CGTCTC	2 cut(s)	1148, 1426
BsmFI	GGGAC	2 cut(s)	58, 385
BsnI	GGCC	4 cut(s)	49, 248, 408, 2061
Bso31I	GGTCTC	1 cut(s)	2519
BsoBI	CYCGRG	1 cut(s)	1356
Bsp119I	TTCGAA	1 cut(s)	625
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	5 cut(s)	27, 51, 595, 963, 1979
Bsp143I	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
Bsp1720I	GCTNAGC	1 cut(s)	957
Bsp19I	CCATGG	2 cut(s)	1840, 2197
BspACI	CCGC	9 cut(s)	27, 32, 96, 99, 102, 162, 181, 256, 1712
BspANI	GGCC	4 cut(s)	49, 248, 408, 2061
BspDI	ATCGAT	1 cut(s)	1553
BspHI	TCATGA	1 cut(s)	727
BspLI	GGNNCC	6 cut(s)	49, 260, 594, 603, 1670, 1918
BspMAI	CTGCAG	1 cut(s)	1021
BspPI	GGATC	2 cut(s)	2218, 2252
BspQI	GCTCTTC	3 cut(s)	975, 996, 1254
BspT104I	TTCGAA	1 cut(s)	625
BspT107I	GGYRCC	2 cut(s)	1668, 1916
BspTNI	GGTCTC	1 cut(s)	2519
BsrBI	CCGCTC	1 cut(s)	29
BsrDI	GCAATG	3 cut(s)	1416, 2097, 2562
BsrI	ACTGG	5 cut(s)	389, 510, 1572, 1639, 1830
BssECI	CCNNGG	7 cut(s)	60, 192, 193, 1840, 1978, 2197, 2529
BssMI	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
BssNI	GRCGYC	2 cut(s)	9, 153
BssT1I	CCWWGG	2 cut(s)	1840, 2197
Bst2UI	CCWGG	2 cut(s)	194, 1980
Bst4CI	ACNGT	9 cut(s)	639, 972, 1343, 1524, 1545, 1673, 1781, 2385, 2471
Bst6I	CTCTTC	6 cut(s)	975, 991, 996, 1254, 1809, 2025
BstACI	GRCGYC	2 cut(s)	9, 153
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	5 cut(s)	23, 27, 181, 447, 1238
BstDSI	CCRYGG	2 cut(s)	1840, 2197
BstF5I	GGATG	1 cut(s)	982
BstHHI	GCGC	2 cut(s)	57, 699
BstKTI	GATC	7 cut(s)	781, 837, 991, 1027, 1420, 2213, 2260
BstMAI	GTCTC	9 cut(s)	505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
BstMBI	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 46, 110, 195, 284, 335, 515, 953, 1700
BstNI	CCWGG	2 cut(s)	194, 1980
BstNSI	RCATGY	2 cut(s)	1928, 1961
BstSCI	CCNGG	2 cut(s)	192, 1978
BstSFI	CTRYAG	1 cut(s)	1017
BstSLI	GKGCMC	1 cut(s)	51
BstV2I	GAAGAC	3 cut(s)	623, 879, 1200
BstX2I	RGATCY	3 cut(s)	1024, 1417, 2210
BstYI	RGATCY	3 cut(s)	1024, 1417, 2210
Bsu15I	ATCGAT	1 cut(s)	1553
Bsu36I	CCTNAGG	1 cut(s)	597
BsuI	GTATCC	3 cut(s)	1621, 2029, 2569
BsuRI	GGCC	4 cut(s)	49, 248, 408, 2061
BsuTUI	ATCGAT	1 cut(s)	1553
BtgI	CCRYGG	2 cut(s)	1840, 2197
BtrI	CACGTC	1 cut(s)	1158
BtsCI	GGATG	1 cut(s)	982
BtsI	GCAGTG	3 cut(s)	292, 706, 1683
Cac8I	GCNNGC	5 cut(s)	23, 27, 181, 447, 1238
CaiI	CAGNNNCTG	2 cut(s)	899, 1892
CciI	TCATGA	1 cut(s)	727
CfoI	GCGC	2 cut(s)	57, 699
Cfr13I	GGNCC	7 cut(s)	47, 48, 407, 602, 639, 1719, 1889
ClaI	ATCGAT	1 cut(s)	1553
CseI	GACGC	3 cut(s)	142, 2096, 2321
Csp6I	GTAC	8 cut(s)	422, 513, 1040, 1520, 1669, 1884, 2289, 2463
CviQI	GTAC	8 cut(s)	422, 513, 1040, 1520, 1669, 1884, 2289, 2463
DpnI	GATC	7 cut(s)	780, 836, 990, 1026, 1419, 2212, 2259
DpnII	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
DraIII	CACNNNGTG	1 cut(s)	2345
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	6 cut(s)	975, 991, 996, 1254, 1809, 2025
EarI	CTCTTC	6 cut(s)	975, 991, 996, 1254, 1809, 2025
EciI	GGCGGA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	961
Eco130I	CCWWGG	2 cut(s)	1840, 2197
Eco24I	GRGCYC	5 cut(s)	27, 51, 595, 963, 1979
Eco31I	GGTCTC	1 cut(s)	2519
Eco32I	GATATC	1 cut(s)	1786
Eco47I	GGWCC	4 cut(s)	602, 639, 1719, 1889
Eco53kI	GAGCTC	1 cut(s)	961
Eco57I	CTGAAG	5 cut(s)	432, 936, 1121, 1662, 1959
Eco81I	CCTNAGG	1 cut(s)	597
Eco88I	CYCGRG	1 cut(s)	1356
EcoICRI	GAGCTC	1 cut(s)	961
EcoO109I	RGGNCCY	1 cut(s)	1889
EcoRI	GAATTC	2 cut(s)	1402, 1823
EcoRII	CCWGG	2 cut(s)	192, 1978
EcoRV	GATATC	1 cut(s)	1786
EcoT14I	CCWWGG	2 cut(s)	1840, 2197
EcoT38I	GRGCYC	5 cut(s)	27, 51, 595, 963, 1979
ErhI	CCWWGG	2 cut(s)	1840, 2197
Esp3I	CGTCTC	2 cut(s)	1148, 1426
FalI	AAGNNNNNCTT	2 cut(s)	1841, 1873
FaqI	GGGAC	2 cut(s)	58, 385
FauI	CCCGC	2 cut(s)	34, 188
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	272
FokI	GGATG	1 cut(s)	989
FriOI	GRGCYC	5 cut(s)	27, 51, 595, 963, 1979
FspBI	CTAG	6 cut(s)	1200, 1241, 1394, 1452, 1689, 1746
FspI	TGCGCA	1 cut(s)	698
GlaI	GCGC	2 cut(s)	56, 698
GsaI	CCCAGC	2 cut(s)	121, 2173
HaeIII	GGCC	4 cut(s)	49, 248, 408, 2061
HgaI	GACGC	3 cut(s)	142, 2096, 2321
HhaI	GCGC	2 cut(s)	57, 699
Hin1I	GRCGYC	2 cut(s)	9, 153
Hin6I	GCGC	2 cut(s)	55, 697
HinP1I	GCGC	2 cut(s)	55, 697
HincII	GTYRAC	2 cut(s)	273, 1269
HindII	GTYRAC	2 cut(s)	273, 1269
HindIII	AAGCTT	2 cut(s)	945, 1133
HinfI	GANTC	9 cut(s)	65, 269, 755, 1142, 2323, 2444, 2507, 2519, 2588
HphI	GGTGA	7 cut(s)	79, 151, 569, 1814, 1819, 2003, 2516
Hpy166II	GTNNAC	7 cut(s)	87, 273, 1163, 1269, 1805, 2398, 2540
Hpy8I	GTNNAC	7 cut(s)	87, 273, 1163, 1269, 1805, 2398, 2540
Hpy99I	CGWCG	2 cut(s)	11, 14
HpyAV	CCTTC	9 cut(s)	307, 814, 1438, 1637, 1934, 2051, 2199, 2231, 2495
HpyCH4III	ACNGT	9 cut(s)	639, 972, 1343, 1524, 1545, 1673, 1781, 2385, 2471
HpyCH4IV	ACGT	4 cut(s)	9, 374, 424, 1157
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 46, 110, 195, 284, 335, 515, 953, 1700
HpySE526I	ACGT	4 cut(s)	9, 374, 424, 1157
Hsp92I	GRCGYC	2 cut(s)	9, 153
HspAI	GCGC	2 cut(s)	55, 697
KpnI	GGTACC	1 cut(s)	1672
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
LguI	GCTCTTC	3 cut(s)	975, 996, 1254
LmnI	GCTCC	4 cut(s)	34, 62, 598, 2371
LweI	GCATC	9 cut(s)	230, 235, 316, 347, 733, 805, 1048, 1078, 1545
MaeI	CTAG	6 cut(s)	1200, 1241, 1394, 1452, 1689, 1746
MaeII	ACGT	4 cut(s)	9, 374, 424, 1157
MaeIII	GTNAC	4 cut(s)	701, 1762, 1991, 2108
MalI	GATC	7 cut(s)	780, 836, 990, 1026, 1419, 2212, 2259
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
MfeI	CAATTG	1 cut(s)	684
MflI	RGATCY	3 cut(s)	1024, 1417, 2210
MhlI	GDGCHC	5 cut(s)	27, 51, 595, 963, 1979
MlyI	GAGTC	4 cut(s)	74, 278, 2438, 2513
MmeI	TCCRAC	5 cut(s)	30, 198, 666, 954, 2575
MseI	TTAA	4 cut(s)	813, 879, 1128, 2375
MslI	CAYNNNNRTG	3 cut(s)	203, 732, 1779
MspA1I	CMGCKG	1 cut(s)	518
MspR9I	CCNGG	2 cut(s)	194, 1980
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	194, 1980
MwoI	GCNNNNNNNGC	9 cut(s)	31, 46, 110, 195, 284, 335, 515, 953, 1700
NcoI	CCATGG	2 cut(s)	1840, 2197
NdeII	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
NlaIV	GGNNCC	6 cut(s)	49, 260, 594, 603, 1670, 1918
NmuCI	GTSAC	3 cut(s)	701, 1991, 2108
NsbI	TGCGCA	1 cut(s)	698
NspI	RCATGY	2 cut(s)	1928, 1961
NspV	TTCGAA	1 cut(s)	625
PaeR7I	CTCGAG	1 cut(s)	1356
PagI	TCATGA	1 cut(s)	727
PasI	CCCWGGG	1 cut(s)	193
PciSI	GCTCTTC	3 cut(s)	975, 996, 1254
PcsI	WCGNNNNNNNCGW	4 cut(s)	18, 141, 371, 2559
PfeI	GAWTC	5 cut(s)	755, 1142, 2323, 2507, 2588
PleI	GAGTC	4 cut(s)	73, 277, 2438, 2513
PpsI	GAGTC	4 cut(s)	73, 277, 2438, 2513
PpuMI	RGGWCCY	1 cut(s)	1889
Psp124BI	GAGCTC	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	1889
Psp6I	CCWGG	2 cut(s)	192, 1978
PspFI	CCCAGC	2 cut(s)	117, 2169
PspGI	CCWGG	2 cut(s)	192, 1978
PspN4I	GGNNCC	6 cut(s)	49, 260, 594, 603, 1670, 1918
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	7 cut(s)	47, 48, 407, 602, 639, 1719, 1889
PspPPI	RGGWCCY	1 cut(s)	1889
PstI	CTGCAG	1 cut(s)	1021
PstNI	CAGNNNCTG	2 cut(s)	899, 1892
PsuI	RGATCY	3 cut(s)	1024, 1417, 2210
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	8 cut(s)	423, 514, 1041, 1521, 1670, 1885, 2290, 2464
RsaNI	GTAC	8 cut(s)	422, 513, 1040, 1520, 1669, 1884, 2289, 2463
RseI	CAYNNNNRTG	3 cut(s)	203, 732, 1779
SacI	GAGCTC	1 cut(s)	963
SalI	GTCGAC	1 cut(s)	271
SapI	GCTCTTC	3 cut(s)	975, 996, 1254
SaqAI	TTAA	4 cut(s)	813, 879, 1128, 2375
Sau3AI	GATC	7 cut(s)	778, 834, 988, 1024, 1417, 2210, 2257
Sau96I	GGNCC	7 cut(s)	47, 48, 407, 602, 639, 1719, 1889
ScaI	AGTACT	1 cut(s)	2290
SchI	GAGTC	4 cut(s)	74, 278, 2438, 2513
ScrFI	CCNGG	2 cut(s)	194, 1980
SduI	GDGCHC	5 cut(s)	27, 51, 595, 963, 1979
SfaNI	GCATC	9 cut(s)	230, 235, 316, 347, 733, 805, 1048, 1078, 1545
SfcI	CTRYAG	1 cut(s)	1017
Sfr274I	CTCGAG	1 cut(s)	1356
SfuI	TTCGAA	1 cut(s)	625
SinI	GGWCC	4 cut(s)	602, 639, 1719, 1889
SlaI	CTCGAG	1 cut(s)	1356
SmiMI	CAYNNNNRTG	3 cut(s)	203, 732, 1779
SmlI	CTYRAG	5 cut(s)	350, 962, 1062, 1177, 1356
SmoI	CTYRAG	5 cut(s)	350, 962, 1062, 1177, 1356
SsiI	CCGC	9 cut(s)	27, 32, 96, 99, 102, 162, 181, 256, 1712
SspI	AATATT	2 cut(s)	1082, 2002
SspMI	CTAG	6 cut(s)	1200, 1241, 1394, 1452, 1689, 1746
SstI	GAGCTC	1 cut(s)	963
StyD4I	CCNGG	2 cut(s)	192, 1978
StyI	CCWWGG	2 cut(s)	1840, 2197
TaaI	ACNGT	9 cut(s)	639, 972, 1343, 1524, 1545, 1673, 1781, 2385, 2471
TaiI	ACGT	4 cut(s)	12, 377, 427, 1160
TaqI	TCGA	6 cut(s)	272, 625, 870, 1282, 1357, 1553
TaqII	GACCGA	1 cut(s)	2543
TatI	WGTACW	4 cut(s)	512, 1039, 1519, 2288
TauI	GCSGC	2 cut(s)	101, 104
TfiI	GAWTC	5 cut(s)	755, 1142, 2323, 2507, 2588
Tru1I	TTAA	4 cut(s)	813, 879, 1128, 2375
Tru9I	TTAA	4 cut(s)	813, 879, 1128, 2375
TseFI	GTSAC	3 cut(s)	701, 1991, 2108
Tsp45I	GTSAC	3 cut(s)	701, 1991, 2108
TspGWI	ACGGA	5 cut(s)	133, 662, 1985, 2335, 2581
VpaK11BI	GGWCC	4 cut(s)	602, 639, 1719, 1889
XapI	RAATTY	2 cut(s)	1402, 1823
XceI	RCATGY	2 cut(s)	1928, 1961
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2204
XhoI	CTCGAG	1 cut(s)	1356
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	6 cut(s)	1200, 1241, 1394, 1452, 1689, 1746
ZraI	GACGTC	1 cut(s)	10
ZrmI	AGTACT	1 cut(s)	2290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.