Rorug01G0214400

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005860
Physical Location & Seq
Reverse (-)
30500697 .. 30502381
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0214400.1

Sequence Viewer

Length: 261 bp
ATGAAGGAGGAGCTCAGGTTCCACTCCGCTCTAGCCTACGCCCCTCTGCCTTCTTCGATGCAGGGTATTCCGGTGCAGCAAACTGACAAGGATTGTGGCATATTCATCATGCGGTTCATGAAAGAAATAGTTGAGGATAGGAATCTGGAATTTGCATCAAAGTGGCAGCGGCGATCATCTAAGGAACTGGTTTACACCCAAAAGGATCTTGATGCTGTGAGGACAGAGTGGGCTAAGTTTGTCATGAAGTATCACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

86

Amino Acids

10.23

Weight (kDa)

8.79

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 21 - 79 5.2e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 3 cut(s) 27, 112, 169
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 149
AloI GAACNNNNNNTCC 1 cut(s) 34
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 76, 166
ApoI RAATTY 1 cut(s) 149
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 2 cut(s) 88, 178
BfaI CTAG 1 cut(s) 32
BisI GCNGC 3 cut(s) 77, 167, 170
BlsI GCNGC 3 cut(s) 78, 168, 171
BmiI GGNNCC 1 cut(s) 20
BmsI GCATC 3 cut(s) 48, 164, 202
Bpu10I CCTNAGC 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 141
BseMII CTCAG 1 cut(s) 28
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 2 cut(s) 88, 178
BsgI GTGCAG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 2 cut(s) 173, 205
BspACI CCGC 3 cut(s) 27, 112, 169
BspCNI CTCAG 1 cut(s) 27
BspHI TCATGA 2 cut(s) 117, 243
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 192
BssMI GATC 2 cut(s) 173, 205
BstDEI CTNAG 3 cut(s) 14, 180, 234
BstKTI GATC 2 cut(s) 176, 208
BstMBI GATC 2 cut(s) 173, 205
BstV1I GCAGC 2 cut(s) 88, 178
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
CciI TCATGA 2 cut(s) 117, 243
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 109, 118, 244
CviJI RGCY 3 cut(s) 13, 35, 233
CviKI_1 RGCY 3 cut(s) 13, 35, 233
DdeI CTNAG 3 cut(s) 14, 180, 234
DpnI GATC 2 cut(s) 175, 207
DpnII GATC 2 cut(s) 173, 205
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
EcoICRI GAGCTC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 3 cut(s) 112, 121, 247
FaiI YATR 5 cut(s) 101, 110, 119, 245, 259
FatI CATG 3 cut(s) 108, 117, 243
Fnu4HI GCNGC 3 cut(s) 77, 167, 170
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 3 cut(s) 77, 167, 170
FspBI CTAG 1 cut(s) 32
GluI GCNGC 3 cut(s) 77, 167, 170
HapII CCGG 1 cut(s) 71
Hin1II CATG 3 cut(s) 112, 121, 247
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 4 cut(s) 118, 146, 209, 244
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 61, 76, 155
HpyF3I CTNAG 3 cut(s) 14, 180, 234
Hsp92II CATG 3 cut(s) 112, 121, 247
Kzo9I GATC 2 cut(s) 173, 205
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 47, 84, 131, 173
Lsp1109I GCAGC 2 cut(s) 88, 178
LweI GCATC 3 cut(s) 48, 164, 202
MaeI CTAG 1 cut(s) 32
MalI GATC 2 cut(s) 175, 207
MbiI CCGCTC 1 cut(s) 29
MboI GATC 2 cut(s) 173, 205
MboII GAAGA 1 cut(s) 45
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 1 cut(s) 149
MnlI CCTC 3 cut(s) 54, 127, 213
MslI CAYNNNNRTG 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 1 cut(s) 71
NdeII GATC 2 cut(s) 173, 205
NlaIII CATG 3 cut(s) 112, 121, 247
NlaIV GGNNCC 1 cut(s) 20
PagI TCATGA 2 cut(s) 117, 243
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 78, 168, 171
Psp124BI GAGCTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 15
SatI GCNGC 3 cut(s) 77, 167, 170
Sau3AI GATC 2 cut(s) 173, 205
SduI GDGCHC 1 cut(s) 15
SetI ASST 2 cut(s) 15, 20
SfaNI GCATC 3 cut(s) 48, 164, 202
SmiMI CAYNNNNRTG 1 cut(s) 160
Sse9I AATT 1 cut(s) 149
SsiI CCGC 3 cut(s) 27, 112, 169
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 15
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 149
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 1 cut(s) 142
TseI GCWGC 2 cut(s) 76, 166
TspDTI ATGAA 5 cut(s) 17, 94, 106, 134, 260
XapI RAATTY 1 cut(s) 149
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.