Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005860

Physical Location & Seq

Genomic Coordinates Forward (+)

30513083 .. 30519428

Gene Structure 6346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0214500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGCCTCCGAGGACGGTGAAGAGAGGTTCGGGGTCGGCGGGTACTAAGAGGACGACGAGGGCTACCAGAGGAGCACCCAAGGCCCAGAACCAGGCCCAGCCCGATGTGCCTGACGAGTCAATGAAGGCTGAGGTCACGGTGCCGGTGGCTGAAGGTAAAGAGGAGCTCAAGGGTGAAAGGATTCAAGAGAAGCCGATTGTGGAGGAAGCTGCGGTGGTTGTGGAGGAAGATCCAGTTGTTGAGGAGAAGCCTGTTGCTATTGATCGCCCAGGGTTTGAAGTCGATGCGAAATCGGATCAGAACGGCTTCAAAAAACAAGATAAGGCTAAGGACTCTATAGATGATTATGAAAAAGATGAACGGCTAGAGCTGGAGGATAATGAACCTGAATATGAACCCGAAGAATATGTTGGGGTTGATTACGATGAGAAGGAGATTGAACAAGAGGATGCCCAGGAGGCTGAGGATGAAGGAGATGAGGATCCTGAGGAGAATCTAGGTGAAGAAGAGGGTGATATGGCTGAGGAGGAAATGGAAGATGTACATGAAGAAATTGAAGGTGAAGAATATGAGGAGCATGGTGGTGAGGAGCATGAGCATGAGCATGAGCATGAGCATGAGCATGCACATGCACAGATGGTTGACGCCGAGGAAGAGGAGCACCATGAAGTTGTGAAAGAGAGGCGGAAGCGCAAGGAATTCGAAGTGTTTGTTGGTGGCTTAGACAAGGATGCAGATGAAGCTGATCTTAGGAAAGCTTTTGGTGTAGTTGGTGAGGTTACTGAGGTTAGATTGATGATGAACCCTCAGACTAAGAAGAACAAGGGATTTGCATTCTTGCGTTTTGCAACTGTGGAACAAGCAAAACGAGCTGTTAGAGAGCTTAAACATCCAGTGATCAATGGGAAACAATGTGGTGTTACTCCAAGTCAGGATAGTGATACCCTTTTTCTGGGTAACATCTGCAAAACATGGTCAAAGGATGCTTTGAAGGAGAAATTGAAACATTATGGAGTAGATAATGTTGAGGATTTGACAGTAGTTGAAGATACTAATAATGAGGGAATGAATCGGGGCTTTGCTTTTTTGGAATTTTCATCTCGCTCGGATGCCATGGATGCCTTCAAGCGCCTTCAGAAAAGAGATATTGTGTTTGGAGTTGAAAGGCCTGCAAAGGTTTCTTTTGCAGATTCCTTCATTGACCCTGGTGATGAAATTATGGCGCAGGTTAAAACTATATTTGTGGATGGCCTACCTGCTTCTTGGGATGAGGATTATGTTCAACAGCTTCTTAAGGACTATGGGGAGATTGAAAAGATAGAGCTTGCTCGCAACATGCCTTCTGCCAAGAGGAAGGATTTTGGTTTTATTACATTTGACACTCATGAGAATGCATTGACATGTGCTAATTGCATCAACAATGCAGAAATAGGTGAAGGGGACAACAAGGCAAAGCTTAGGGCAAGGTTGTCAAGACCCCTTCAGAGAGGGAAAGGCAAACATGTTGGTCGTGGTGATTATCGGTCCCCACGGGGGGATGGACGAGTTATTAGGGGTTCATGGGGGCGCCCTACACCACCACGTAGTCTACCTATGCGTGGATTAAGAGGAGTTGGAAGTCGTATCCCACCAGCCAGTGTGAAGAGGCCGGTTGGACTGAGAGATAGACGCCCTGCAATCTCGTCTTATCCTGCTAGACCCAGGCCTTTGCCTCCTCCAGCTAGGTCCTATGACAGGAGGCCACCTGTTCCGGCCTACCCAAAGAGTAGCTTCAGAAGGGAATATAGTAGACGGGATGACCTTCCTCCTCCAAGGAGCAGAGCAGCGGCTGATTATGGTTCAAGGGCTGTGCCAGAGAGACGCCAGTCATATAGAGATGACTATAGTACACGTGGTCCTGCCTACGTTGACCCACCAAGAAGTACATCTCGTACAACAGCGAGGAGAGCTTATGTAGATGACAGTTATGGACAAAGGTTTGAAAGGCACCCTCCCCCACCTCCTCCTAGTTACCACCGTGAAGGTCGTGCTCGTGATTACGACTCTATTTCTGGGTCAAAGCGTCCATACTCTGCTCTGGACGATGTTCCACCTCGATATGCTGATACTGGCATCCGCCAATCAAGGGCACGATTGGACTATGAATATGGAAGTGGTTCTTCTCAATATGGGGATGGCTATAGTGATAGAGTTGGGAGGTCTAGTTTAGGATATGGGAGCAGCAGGACAAGTCAGGATTCACATGGACTTTATAGCAACCGTCAGAGCATGGGTTATGGAGGAGGTTCTTATGGTGGTAATGATGTTGGTGGGATGTACTCATCAAGCTACGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGAGGTAGCTCTTACTCATCAATGTACTCCGGTCGTGGTGTTGGTGGAAGCAGTTATATGGGTTCAGGTGGTTCCGGCTCGTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

817

Amino Acids

91.44

Weight (kDa)

5.25

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	236 - 304	1.8e-17	RNA recognition motif
RRM_1	PF00076	316 - 382	7e-08	RNA recognition motif
RRM_1	PF00076	413 - 478	6.3e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45460 AT2G45460 AT2G45460 AT2G45460
fragaria_vesca	FvH4_7g12090 FvH4_7g12090 FvH4_7g12090 FvH4_7g12090
malus_domestica	MD02G1201400.v1.1
prunus_persica	Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1 Prupe.2G147400_v2.0.a1
pyrus_communis	pycom02g16480
rosa_chinensis	RchiOBHm_Chr1g0350831
rosa_laevigata	RLG00000028451
rosa_multiflora	Rmu_sc0006200.1_g000006 Rmu_sc0008251.1_g000003
rosa_roxburghii	Rroxscaffold_4G00304480
rosa_rugosa	Rorug01G0214400 Rorug01G0214500
rosa_samantha	Rh1AG228900 Rh1BG198900 Rh1CG213700 Rh1DG226800
rosa_wichuraiana	Rw1G019820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1216, 1264
AccB1I	GGYRCC	3 cut(s)	139, 1566, 1986
AccI	GTMKAC	2 cut(s)	1588, 1789
AciI	CCGC	5 cut(s)	38, 212, 685, 1826, 2116
AclWI	GGATC	4 cut(s)	224, 303, 476, 489
AcsI	RAATTY	2 cut(s)	698, 1091
AcuI	CTGAAG	4 cut(s)	171, 1118, 1466, 1756
AcvI	CACGTG	1 cut(s)	1892
AcyI	GRCGYC	4 cut(s)	645, 1567, 1669, 1861
AfaI	GTAC	8 cut(s)	43, 543, 1888, 1924, 1933, 2318, 2390, 2447
AfiI	CCNNNNNNNGG	7 cut(s)	91, 952, 1533, 1534, 1598, 1734, 2125
AflII	CTTAAG	1 cut(s)	1292
AflIII	ACRYGT	3 cut(s)	1400, 1501, 1889
AjnI	CCWGG	5 cut(s)	90, 268, 453, 1204, 1700
AjuI	GAANNNNNNNTTGG	4 cut(s)	393, 425, 696, 728
Alw21I	GWGCWC	4 cut(s)	76, 168, 663, 2032
Alw26I	GTCTC	2 cut(s)	1852, 2352
AlwI	GGATC	4 cut(s)	224, 303, 476, 489
AlwNI	CAGNNNCTG	1 cut(s)	1829
AoxI	GGCC	8 cut(s)	81, 93, 1166, 1249, 1646, 1703, 1739, 1752
ApeKI	GCWGC	3 cut(s)	209, 1823, 2220
ApoI	RAATTY	2 cut(s)	698, 1091
Asp700I	GAANNNNTTC	3 cut(s)	180, 305, 2155
AspLEI	GCGC	4 cut(s)	693, 1131, 1225, 1569
AspS9I	GGNCC	5 cut(s)	82, 94, 1524, 1725, 1895
AsuII	TTCGAA	1 cut(s)	702
AvaII	GGWCC	3 cut(s)	1524, 1725, 1895
AxyI	CCTNAGG	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	2131
BamHI	GGATCC	1 cut(s)	481
BanI	GGYRCC	3 cut(s)	139, 1566, 1986
BanII	GRGCYC	1 cut(s)	168
BauI	CACGAG	2 cut(s)	2031, 2349
BbrPI	CACGTG	1 cut(s)	1892
Bbv12I	GWGCWC	4 cut(s)	76, 168, 663, 2032
BbvCI	CCTCAGC	3 cut(s)	129, 462, 522
BbvI	GCAGC	3 cut(s)	196, 1835, 2232
BccI	CCATC	4 cut(s)	631, 1241, 1532, 2168
BceAI	ACGGC	2 cut(s)	319, 377
BcgI	CGANNNNNNTGC	2 cut(s)	682, 716
BciT130I	CCWGG	5 cut(s)	92, 270, 455, 1206, 1702
BciVI	GTATCC	1 cut(s)	1634
BclI	TGATCA	1 cut(s)	897
BcoDI	GTCTC	2 cut(s)	1852, 2352
BfaI	CTAG	6 cut(s)	365, 497, 1695, 1722, 2007, 2202
BfmI	CTRYAG	3 cut(s)	336, 1882, 2179
BfoI	RGCGCY	2 cut(s)	1132, 1570
BfrI	CTTAAG	1 cut(s)	1292
BfuAI	ACCTGC	2 cut(s)	1216, 1264
BfuI	GTATCC	1 cut(s)	1634
BglI	GCCNNNNNGGC	1 cut(s)	458
BisI	GCNGC	4 cut(s)	210, 1824, 1827, 2221
BlsI	GCNGC	4 cut(s)	211, 1825, 1828, 2222
Bme1390I	CCNGG	5 cut(s)	92, 270, 455, 1206, 1702
Bme18I	GGWCC	3 cut(s)	1524, 1725, 1895
BmgT120I	GGNCC	5 cut(s)	82, 94, 1524, 1725, 1895
BmiI	GGNNCC	6 cut(s)	141, 483, 1526, 1568, 1988, 2437
BmrFI	CCNGG	5 cut(s)	92, 270, 455, 1206, 1702
BmsI	GCATC	8 cut(s)	274, 439, 721, 973, 1099, 1108, 1422, 2121
BoxI	GACNNNNGTC	1 cut(s)	1864
BpmI	CTGGAG	2 cut(s)	392, 1701
Bpu10I	CCTNAGC	5 cut(s)	129, 327, 462, 522, 1457
Bpu14I	TTCGAA	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	152
BsaAI	YACGTR	2 cut(s)	1583, 1892
BsaBI	GATNNNNATC	1 cut(s)	480
BsaHI	GRCGYC	4 cut(s)	645, 1567, 1669, 1861
BsaWI	WCCGGW	1 cut(s)	2393
BsaXI	ACNNNNNCTCC	2 cut(s)	2188, 2218
Bsc4I	CCNNNNNNNGG	7 cut(s)	91, 952, 1533, 1534, 1598, 1734, 2125
Bse118I	RCCGGY	2 cut(s)	142, 1648
Bse1I	ACTGG	5 cut(s)	233, 893, 1635, 1864, 2113
Bse21I	CCTNAGG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	5 cut(s)	92, 270, 455, 1206, 1702
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	7 cut(s)	91, 952, 1533, 1534, 1598, 1734, 2125
BseMII	CTCAG	7 cut(s)	120, 453, 477, 513, 774, 821, 1649
BseNI	ACTGG	5 cut(s)	233, 893, 1635, 1864, 2113
BseSI	GKGCMC	1 cut(s)	2131
BseXI	GCAGC	3 cut(s)	196, 1835, 2232
BseYI	CCCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	2398
BshFI	GGCC	8 cut(s)	83, 95, 1168, 1251, 1648, 1705, 1741, 1754
BshNI	GGYRCC	3 cut(s)	139, 1566, 1986
BsiEI	CGRYCG	1 cut(s)	2398
BsiHKAI	GWGCWC	4 cut(s)	76, 168, 663, 2032
BsiSI	CCGG	5 cut(s)	143, 1649, 1751, 2394, 2439
BslFI	GGGAC	2 cut(s)	1454, 1510
BslI	CCNNNNNNNGG	7 cut(s)	91, 952, 1533, 1534, 1598, 1734, 2125
BsmAI	GTCTC	2 cut(s)	1852, 2352
BsmBI	CGTCTC	1 cut(s)	1852
BsmFI	GGGAC	2 cut(s)	1454, 1510
BsmI	GAATGC	2 cut(s)	833, 1396
BsnI	GGCC	8 cut(s)	83, 95, 1168, 1251, 1648, 1705, 1741, 1754
Bsp119I	TTCGAA	1 cut(s)	702
Bsp1286I	GDGCHC	5 cut(s)	76, 168, 663, 2032, 2131
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
Bsp19I	CCATGG	1 cut(s)	1113
BspACI	CCGC	5 cut(s)	38, 212, 685, 1826, 2116
BspANI	GGCC	8 cut(s)	83, 95, 1168, 1251, 1648, 1705, 1741, 1754
BspCNI	CTCAG	7 cut(s)	121, 454, 478, 514, 775, 820, 1650
BspHI	TCATGA	1 cut(s)	1384
BspLI	GGNNCC	6 cut(s)	141, 483, 1526, 1568, 1988, 2437
BspMI	ACCTGC	2 cut(s)	1216, 1264
BspPI	GGATC	4 cut(s)	224, 303, 476, 489
BspT104I	TTCGAA	1 cut(s)	702
BspT107I	GGYRCC	3 cut(s)	139, 1566, 1986
BspTI	CTTAAG	1 cut(s)	1292
BsrFI	RCCGGY	2 cut(s)	142, 1648
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	5 cut(s)	233, 893, 1635, 1864, 2113
BssAI	RCCGGY	2 cut(s)	142, 1648
BssMI	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
BssNI	GRCGYC	4 cut(s)	645, 1567, 1669, 1861
BssSI	CACGAG	2 cut(s)	2031, 2349
BssT1I	CCWWGG	3 cut(s)	78, 1113, 1811
Bst2BI	CACGAG	2 cut(s)	2031, 2349
Bst2UI	CCWGG	5 cut(s)	92, 270, 455, 1206, 1702
Bst4CI	ACNGT	8 cut(s)	16, 139, 853, 1039, 1964, 2018, 2261, 2333
Bst6I	CTCTTC	4 cut(s)	14, 501, 648, 1637
BstACI	GRCGYC	4 cut(s)	645, 1567, 1669, 1861
BstAFI	CTTAAG	1 cut(s)	1292
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	2 cut(s)	1583, 1892
BstBI	TTCGAA	1 cut(s)	702
BstC8I	GCNNGC	4 cut(s)	624, 1170, 1326, 1330
BstDSI	CCRYGG	2 cut(s)	1113, 1529
BstENI	CCTNNNNNAGG	1 cut(s)	1732
BstH2I	RGCGCY	2 cut(s)	1132, 1570
BstHHI	GCGC	4 cut(s)	693, 1131, 1225, 1569
BstKTI	GATC	6 cut(s)	232, 265, 298, 484, 748, 900
BstMAI	GTCTC	2 cut(s)	1852, 2352
BstMBI	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
BstMCI	CGRYCG	1 cut(s)	2398
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 106, 458, 740, 869, 1118, 1946
BstNI	CCWGG	5 cut(s)	92, 270, 455, 1206, 1702
BstNSI	RCATGY	5 cut(s)	626, 632, 1339, 1404, 1505
BstPAI	GACNNNNGTC	1 cut(s)	1864
BstSCI	CCNGG	5 cut(s)	90, 268, 453, 1204, 1700
BstSFI	CTRYAG	3 cut(s)	336, 1882, 2179
BstSLI	GKGCMC	1 cut(s)	2131
BstV1I	GCAGC	3 cut(s)	196, 1835, 2232
BstX2I	RGATCY	2 cut(s)	229, 481
BstYI	RGATCY	2 cut(s)	229, 481
Bsu36I	CCTNAGG	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	1634
BsuRI	GGCC	8 cut(s)	83, 95, 1168, 1251, 1648, 1705, 1741, 1754
BtgI	CCRYGG	2 cut(s)	1113, 1529
BtsIMutI	CAGTG	2 cut(s)	900, 1642
BveI	ACCTGC	2 cut(s)	1216, 1264
Cac8I	GCNNGC	4 cut(s)	624, 1170, 1326, 1330
CaiI	CAGNNNCTG	1 cut(s)	1829
CciI	TCATGA	1 cut(s)	1384
CfoI	GCGC	4 cut(s)	693, 1131, 1225, 1569
Cfr10I	RCCGGY	2 cut(s)	142, 1648
Cfr13I	GGNCC	5 cut(s)	82, 94, 1524, 1725, 1895
CseI	GACGC	4 cut(s)	653, 1677, 1869, 2051
Csp6I	GTAC	8 cut(s)	42, 542, 1887, 1923, 1932, 2317, 2389, 2446
CviQI	GTAC	8 cut(s)	42, 542, 1887, 1923, 1932, 2317, 2389, 2446
DinI	GGCGCC	1 cut(s)	1568
DpnI	GATC	6 cut(s)	231, 264, 297, 483, 747, 899
DpnII	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
Eam1104I	CTCTTC	4 cut(s)	14, 501, 648, 1637
EarI	CTCTTC	4 cut(s)	14, 501, 648, 1637
EciI	GGCGGA	2 cut(s)	700, 2105
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	3 cut(s)	78, 1113, 1811
Eco147I	AGGCCT	2 cut(s)	1168, 1705
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	3 cut(s)	1524, 1725, 1895
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	4 cut(s)	171, 1118, 1466, 1756
Eco72I	CACGTG	1 cut(s)	1892
Eco81I	CCTNAGG	1 cut(s)	486
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	1732
EcoO109I	RGGNCCY	1 cut(s)	1725
EcoRI	GAATTC	1 cut(s)	698
EcoRII	CCWGG	5 cut(s)	90, 268, 453, 1204, 1700
EcoT14I	CCWWGG	3 cut(s)	78, 1113, 1811
EcoT22I	ATGCAT	1 cut(s)	1396
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	1568
EheI	GGCGCC	1 cut(s)	1568
ErhI	CCWWGG	3 cut(s)	78, 1113, 1811
Esp3I	CGTCTC	1 cut(s)	1852
FalI	AAGNNNNNCTT	6 cut(s)	732, 764, 1754, 1786, 2143, 2175
FaqI	GGGAC	2 cut(s)	1454, 1510
FauI	CCCGC	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	897
FblI	GTMKAC	2 cut(s)	1588, 1789
Fnu4HI	GCNGC	4 cut(s)	210, 1824, 1827, 2221
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	210, 1824, 1827, 2221
FspBI	CTAG	6 cut(s)	365, 497, 1695, 1722, 2007, 2202
GlaI	GCGC	4 cut(s)	692, 1130, 1224, 1568
GluI	GCNGC	4 cut(s)	210, 1824, 1827, 2221
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	2 cut(s)	392, 1701
HaeII	RGCGCY	2 cut(s)	1132, 1570
HaeIII	GGCC	8 cut(s)	83, 95, 1168, 1251, 1648, 1705, 1741, 1754
HapII	CCGG	5 cut(s)	143, 1649, 1751, 2394, 2439
HgaI	GACGC	4 cut(s)	653, 1677, 1869, 2051
HhaI	GCGC	4 cut(s)	693, 1131, 1225, 1569
Hin1I	GRCGYC	4 cut(s)	645, 1567, 1669, 1861
Hin6I	GCGC	4 cut(s)	691, 1129, 1223, 1567
HinP1I	GCGC	4 cut(s)	691, 1129, 1223, 1567
HincII	GTYRAC	2 cut(s)	643, 1909
HindII	GTYRAC	2 cut(s)	643, 1909
HindIII	AAGCTT	2 cut(s)	756, 1454
HinfI	GANTC	8 cut(s)	116, 181, 332, 493, 1069, 1190, 2042, 2237
HpaII	CCGG	5 cut(s)	143, 1649, 1751, 2394, 2439
Hpy166II	GTNNAC	5 cut(s)	643, 1589, 1790, 1889, 1909
Hpy188I	TCNGA	9 cut(s)	9, 295, 300, 810, 1108, 1137, 1485, 1775, 2265
Hpy188III	TCNNGA	8 cut(s)	185, 485, 932, 1385, 1473, 2033, 2078, 2234
Hpy8I	GTNNAC	5 cut(s)	643, 1589, 1790, 1889, 1909
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	8 cut(s)	16, 139, 853, 1039, 1964, 2018, 2261, 2333
HpyCH4IV	ACGT	3 cut(s)	1582, 1891, 1905
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 106, 458, 740, 869, 1118, 1946
HpySE526I	ACGT	3 cut(s)	1582, 1891, 1905
Hsp92I	GRCGYC	4 cut(s)	645, 1567, 1669, 1861
HspAI	GCGC	4 cut(s)	691, 1129, 1223, 1567
KasI	GGCGCC	1 cut(s)	1566
Ksp22I	TGATCA	1 cut(s)	897
Kzo9I	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
LmnI	GCTCC	7 cut(s)	71, 163, 574, 589, 658, 1815, 2217
Lsp1109I	GCAGC	3 cut(s)	196, 1835, 2232
LweI	GCATC	8 cut(s)	274, 439, 721, 973, 1099, 1108, 1422, 2121
MaeI	CTAG	6 cut(s)	365, 497, 1695, 1722, 2007, 2202
MaeII	ACGT	3 cut(s)	1582, 1891, 1905
MaeIII	GTNAC	5 cut(s)	133, 778, 919, 956, 2009
MalI	GATC	6 cut(s)	231, 264, 297, 483, 747, 899
MboI	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
MflI	RGATCY	2 cut(s)	229, 481
MhlI	GDGCHC	5 cut(s)	76, 168, 663, 2032, 2131
MluCI	AATT	6 cut(s)	552, 698, 998, 1091, 1215, 1408
Mly113I	GGCGCC	1 cut(s)	1567
MlyI	GAGTC	3 cut(s)	125, 326, 2036
MmeI	TCCRAC	3 cut(s)	1594, 1633, 2344
Mph1103I	ATGCAT	1 cut(s)	1396
MroXI	GAANNNNTTC	3 cut(s)	180, 305, 2155
MseI	TTAA	4 cut(s)	885, 1230, 1293, 1604
MslI	CAYNNNNRTG	9 cut(s)	582, 597, 603, 609, 615, 621, 627, 1389, 1399
MspA1I	CMGCKG	1 cut(s)	1826
MspCI	CTTAAG	1 cut(s)	1292
MspI	CCGG	5 cut(s)	143, 1649, 1751, 2394, 2439
MspR9I	CCNGG	5 cut(s)	92, 270, 455, 1206, 1702
Mva1269I	GAATGC	2 cut(s)	833, 1396
MvaI	CCWGG	5 cut(s)	92, 270, 455, 1206, 1702
MwoI	GCNNNNNNNGC	7 cut(s)	80, 106, 458, 740, 869, 1118, 1946
NarI	GGCGCC	1 cut(s)	1567
NcoI	CCATGG	1 cut(s)	1113
NdeII	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
NlaIV	GGNNCC	6 cut(s)	141, 483, 1526, 1568, 1988, 2437
NmeAIII	GCCGAG	1 cut(s)	673
NmuCI	GTSAC	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	1396
NspI	RCATGY	5 cut(s)	626, 632, 1339, 1404, 1505
NspV	TTCGAA	1 cut(s)	702
PaeI	GCATGC	1 cut(s)	626
PagI	TCATGA	1 cut(s)	1384
PasI	CCCWGGG	1 cut(s)	269
PceI	AGGCCT	2 cut(s)	1168, 1705
PciI	ACATGT	2 cut(s)	1400, 1501
PctI	GAATGC	2 cut(s)	833, 1396
PdmI	GAANNNNTTC	3 cut(s)	180, 305, 2155
PfeI	GAWTC	5 cut(s)	181, 493, 1069, 1190, 2237
PkrI	GCNGC	4 cut(s)	211, 1825, 1828, 2222
PleI	GAGTC	3 cut(s)	124, 326, 2036
PluTI	GGCGCC	1 cut(s)	1570
PmaCI	CACGTG	1 cut(s)	1892
PmlI	CACGTG	1 cut(s)	1892
PpsI	GAGTC	3 cut(s)	124, 326, 2036
Ppu21I	YACGTR	2 cut(s)	1583, 1892
PpuMI	RGGWCCY	1 cut(s)	1725
PscI	ACATGT	2 cut(s)	1400, 1501
PshAI	GACNNNNGTC	1 cut(s)	1864
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	1725
Psp6I	CCWGG	5 cut(s)	90, 268, 453, 1204, 1700
PspCI	CACGTG	1 cut(s)	1892
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	5 cut(s)	90, 268, 453, 1204, 1700
PspN4I	GGNNCC	6 cut(s)	141, 483, 1526, 1568, 1988, 2437
PspPI	GGNCC	5 cut(s)	82, 94, 1524, 1725, 1895
PspPPI	RGGWCCY	1 cut(s)	1725
PstNI	CAGNNNCTG	1 cut(s)	1829
PsuI	RGATCY	2 cut(s)	229, 481
RsaI	GTAC	8 cut(s)	43, 543, 1888, 1924, 1933, 2318, 2390, 2447
RsaNI	GTAC	8 cut(s)	42, 542, 1887, 1923, 1932, 2317, 2389, 2446
RseI	CAYNNNNRTG	9 cut(s)	582, 597, 603, 609, 615, 621, 627, 1389, 1399
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	885, 1230, 1293, 1604
SatI	GCNGC	4 cut(s)	210, 1824, 1827, 2221
Sau3AI	GATC	6 cut(s)	229, 262, 295, 481, 745, 897
Sau96I	GGNCC	5 cut(s)	82, 94, 1524, 1725, 1895
SchI	GAGTC	3 cut(s)	125, 326, 2036
ScrFI	CCNGG	5 cut(s)	92, 270, 455, 1206, 1702
SduI	GDGCHC	5 cut(s)	76, 168, 663, 2032, 2131
SfaNI	GCATC	8 cut(s)	274, 439, 721, 973, 1099, 1108, 1422, 2121
SfcI	CTRYAG	3 cut(s)	336, 1882, 2179
SfoI	GGCGCC	1 cut(s)	1568
SfuI	TTCGAA	1 cut(s)	702
SinI	GGWCC	3 cut(s)	1524, 1725, 1895
SmiMI	CAYNNNNRTG	9 cut(s)	582, 597, 603, 609, 615, 621, 627, 1389, 1399
SmlI	CTYRAG	2 cut(s)	167, 1292
SmoI	CTYRAG	2 cut(s)	167, 1292
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	6 cut(s)	552, 698, 998, 1091, 1215, 1408
SseBI	AGGCCT	2 cut(s)	1168, 1705
SsiI	CCGC	5 cut(s)	38, 212, 685, 1826, 2116
SspDI	GGCGCC	1 cut(s)	1566
SspMI	CTAG	6 cut(s)	365, 497, 1695, 1722, 2007, 2202
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	2 cut(s)	1168, 1705
StyD4I	CCNGG	5 cut(s)	90, 268, 453, 1204, 1700
StyI	CCWWGG	3 cut(s)	78, 1113, 1811
TaaI	ACNGT	8 cut(s)	16, 139, 853, 1039, 1964, 2018, 2261, 2333
TaiI	ACGT	3 cut(s)	1585, 1894, 1908
TaqI	TCGA	3 cut(s)	282, 702, 2095
TaqII	GACCGA	1 cut(s)	1512
TasI	AATT	6 cut(s)	552, 698, 998, 1091, 1215, 1408
TatI	WGTACW	5 cut(s)	541, 1886, 1922, 2316, 2388
TauI	GCSGC	1 cut(s)	1829
TfiI	GAWTC	5 cut(s)	181, 493, 1069, 1190, 2237
Tru1I	TTAA	4 cut(s)	885, 1230, 1293, 1604
Tru9I	TTAA	4 cut(s)	885, 1230, 1293, 1604
TscAI	CASTG	2 cut(s)	900, 1642
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	3 cut(s)	209, 1823, 2220
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	2 cut(s)	900, 1642
Vha464I	CTTAAG	1 cut(s)	1292
VpaK11BI	GGWCC	3 cut(s)	1524, 1725, 1895
XagI	CCTNNNNNAGG	1 cut(s)	1732
XapI	RAATTY	2 cut(s)	698, 1091
XceI	RCATGY	5 cut(s)	626, 632, 1339, 1404, 1505
XmiI	GTMKAC	2 cut(s)	1588, 1789
XmnI	GAANNNNTTC	3 cut(s)	180, 305, 2155
XspI	CTAG	6 cut(s)	365, 497, 1695, 1722, 2007, 2202
Zsp2I	ATGCAT	1 cut(s)	1396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.