Rw1G019820

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005860
Physical Location & Seq
Reverse (-)
43109437 .. 43114968
5532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019820.1

Sequence Viewer

Length: 2601 bp
ATGTCCGACGTCGGCGAAAGCGAGCCCGCTCCGCTAAAGCCCAATGGGCCCGTGCGCTCCGAGGAGTCCATGTCCCCCATGCAGTTCACCACCTCCGCCGCCGCCAAAATCGCCTCCCAGCCTCTCCCCTCCTACGACCCCTCCGTTTGGGGCGTCCTCACCGCCATCTCCTCCAACGCCCGCAAACGCCCCCAGGGCATAAATATGCTATTGACTTCCATTGAGCATCAAATTGGACGATGCGTGGCCGATAAGCGGTTCCAGATTGAGTCGACTGCCATTAGCGCAAATCACTGCAAGATATATAGGAAGAAGGTTGATGAAGATGCCAAGTCTGCATCAGTCTTCCTCAAGGACACAAGCACGAATGGGACGTATCTCAACTGGGAGAAGCTCACAAAAGTTGGCCCTGAAGTTGAAGTACGTCATGGCGACATTATCTCGCTTGCTGCACCTCCTCAGCATGGTGTTGCATTTGCATTTGTATTTAGAGAAGTTGTCTCCAATGCCAGTACAGCTGGTGCTTTTGCAAAGAGAAAAGCAGATGAGTTTGCTGGTGAGAACAAGAGACTGAAAGGTATTGGCATTGGGGCTCCTGAGGGTCCAATATCTCTTGATGATTTTCGAAGTCTTCAACGGTCCAACACGGAATTGAGGAAGCAATTAGAAAGTCAAGTCATTACAATTGATAGGTTGCGCAGTGACAATCGTTTGGTTGTTGAGCATCATGAAAATGAAAAAAGAGAACTGAAAGAATCAGTTGCAAAACCTTACCTTGATCAACTGAAAGAGTTGCATCGTATTGTGGAGGTTAAACAGAAGGAGGTGGTAGAGATCAATAAGATATGTGCAGAACAAAGATATGCTCTCGAAGACCTTAATGAAAGGCTTACAGCTTCTGTGCAGTCATGCACTGAAGCAAATGAAATAATGAATACTCAGAAAGCTTCTCTGGCTGAGCTCAAGGCACAGTTGGATGAAGAGCGAGATCAGAGAAGAGAAGAGCGAGAAAAGGCTGCAGTAGATCTAAAAGCAGCAGTACATAAAGCTCAATCAGATGCTCAAGAGGAACTAAAACAATATTCTGATGCTGCCACAAGACGAGAGAGAGAGCAACAAGAAGTAATTAACAAGCTTCAGGAATCAGAGAGAGAGACGTGTTTACTAATAGAAAACTTGAGAACAAAATTGGAAGACACTAGGCAAAAGTTGGTAGTCTCTGAAAATAAAAATCGCCAGCTAGACACCCAAGTTTGCGAAGAGCAGTCAACCTCTGATAGTCGAAAAAAGAGAGTGGAAGAACTTGAACATGAGATGAAAGGATTGAGGAAAGAGCTCGAGAGTGAAAAGGCAGCTCGAGAAGAAGCATGGGCTAAAGTTTCTGCCCTTGAACTAGAGATGAATTCTGCAATGCAAGATCTTGATTTTGAGAGACGAAAATTGAAGGCTGCTAGAGAAAGAATAATGCTTCGGGAGACACAACTAAGGGCATTTTATTCCACAACTGAGGAGATTTCTGTACTGTTTGCTAAACAGCAGGAACAGTTGAAATCGATGCAGAGGACACTGGAAGATGAGGAAAATTATGATAACACATCAGTTGATTTTGACCTCAATGTTATTGGGGATACAACTGGAACTGAAGGCAGAGATGATAAAGTAATCAGGTACCGTAGAAACAACACTGCTAGGGCAGGGTCAGCAACAACACCGCAGAGGTCCAATGGAAATCAAATTGGAACATCTAGTGAAGAAGTCAGTGTTACTGAGAAGCATGACTGTGATATCAGAAGCGAACAAGGTGAACATACCGAAGAGGCAGAATTCACCAGTGCAAACCATGGTGTCAAGGGTGGCTTTGGTTCTGACATTGATGGTATTGGTACAGGACCTGTTATGGAGGGAGATGGCATTGGCACCGAGCATGTTCCTGAAACTGAAGGCATTGACACTGAGCATGTTCCTGAAACGGAGAGCCCTGGAATGAATGGTGACGAAAATATTGATTTGAACAAGATTGCCACTATGGAAGAGGATACAATGCAAATTGATGAGGAAGGCCATGTACAAGGAAGTAATGAGAAAGTTGCAATGATTTTTCAGCAGCGTCACTCTCAATCAAACACAATCAGGACAGCAGACCTTATAGCTTCTGAAACTATTGGTAGCTGGGCTTGTAGCACAGCCCCTTCTGTCCATGGAGAAAATGGATCTCCAAGAAGTAGAGACAACGAGGAAGGTGCTGCTGCACCACACGATCCGATTGACAGGGTGGCTGAGAGCCAAAGTACTCCATCTTCTGAGACTGCTGCCACAAGACGGAATCGTGAGCGTCAAGCACTGAGTGAAATGATTGGGATAGTTGCTCCCGACTTAAAAGAACAGTTCGGTAATGTGGACGATAGTTATGATAATGAGAGAAGAAAACAGGCTTCTACATCTGACTCAGATACCGAGAGTTGTACGAACAGTGAAGATAATAACAAAGTTGAAGCTGCCGAAGGTGATTCAATTTCAGACTCAGAGACCGAGGGTAGTGAACGGGTTGATAACGCAATGGACGAAGATGATGTGGATACAGAAGAAGATTCCGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

866

Amino Acids

96.54

Weight (kDa)

4.82

Isoelectric Point (pI)

51.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 78 - 149 5.1e-11 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 698
Acc65I GGTACC 1 cut(s) 1668
AccB1I GGYRCC 2 cut(s) 1668, 1916
AccBSI CCGCTC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 272
AciI CCGC 9 cut(s) 27, 32, 96, 99, 102, 162, 181, 256, 1712
AclWI GGATC 2 cut(s) 2218, 2252
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 2 cut(s) 1402, 1823
AcuI CTGAAG 5 cut(s) 432, 936, 1121, 1662, 1959
AcyI GRCGYC 2 cut(s) 9, 153
AdeI CACNNNGTG 1 cut(s) 2345
AfaI GTAC 9 cut(s) 423, 514, 1041, 1521, 1670, 1885, 2067, 2290, 2464
AfiI CCNNNNNNNGG 4 cut(s) 147, 255, 464, 2319
AflIII ACRYGT 1 cut(s) 1157
AgsI TTSAA 9 cut(s) 419, 635, 1307, 1391, 1444, 1549, 2011, 2492, 2511
AjiI CACGTC 1 cut(s) 1158
AjnI CCWGG 2 cut(s) 192, 1978
AjuI GAANNNNNNNTTGG 1 cut(s) 2577
Alw21I GWGCWC 2 cut(s) 963, 1338
Alw26I GTCTC 9 cut(s) 505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
AlwI GGATC 2 cut(s) 2218, 2252
AlwNI CAGNNNCTG 2 cut(s) 899, 1892
Ama87I CYCGRG 2 cut(s) 1337, 1356
AoxI GGCC 4 cut(s) 47, 246, 406, 2059
ApaI GGGCCC 1 cut(s) 51
ApoI RAATTY 2 cut(s) 1402, 1823
Asp718I GGTACC 1 cut(s) 1668
AspLEI GCGC 3 cut(s) 57, 287, 699
AspS9I GGNCC 7 cut(s) 47, 48, 407, 602, 639, 1719, 1889
AsuHPI GGTGA 7 cut(s) 79, 151, 569, 1814, 1819, 2003, 2516
AsuII TTCGAA 1 cut(s) 625
AvaI CYCGRG 2 cut(s) 1337, 1356
AvaII GGWCC 4 cut(s) 602, 639, 1719, 1889
AxyI CCTNAGG 1 cut(s) 597
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 2 cut(s) 1668, 1916
BanII GRGCYC 6 cut(s) 27, 51, 595, 963, 1338, 1979
BarI GAAGNNNNNNTAC 6 cut(s) 405, 437, 2049, 2081, 2281, 2313
BbsI GAAGAC 4 cut(s) 337, 623, 879, 1200
Bbv12I GWGCWC 2 cut(s) 963, 1338
BbvCI CCTCAGC 1 cut(s) 459
BccI CCATC 4 cut(s) 173, 1868, 1901, 2302
BcgI CGANNNNNNTGC 2 cut(s) 2222, 2256
BciT130I CCWGG 2 cut(s) 194, 1980
BciVI GTATCC 3 cut(s) 1621, 2029, 2569
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 9 cut(s) 505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
BfaI CTAG 6 cut(s) 1200, 1241, 1394, 1452, 1689, 1746
BfmI CTRYAG 1 cut(s) 1017
BfuI GTATCC 3 cut(s) 1621, 2029, 2569
BglI GCCNNNNNGGC 2 cut(s) 46, 195
BglII AGATCT 2 cut(s) 1024, 1417
BlpI GCTNAGC 1 cut(s) 957
BmcAI AGTACT 1 cut(s) 2290
Bme1390I CCNGG 2 cut(s) 194, 1980
Bme18I GGWCC 4 cut(s) 602, 639, 1719, 1889
BmeT110I CYCGRG 2 cut(s) 1337, 1356
BmgBI CACGTC 1 cut(s) 1158
BmgT120I GGNCC 7 cut(s) 47, 48, 407, 602, 639, 1719, 1889
BmiI GGNNCC 6 cut(s) 49, 260, 594, 603, 1670, 1918
BmrFI CCNGG 2 cut(s) 194, 1980
BmrI ACTGGG 1 cut(s) 394
BmsI GCATC 9 cut(s) 230, 235, 316, 347, 733, 805, 1048, 1078, 1545
BmuI ACTGGG 1 cut(s) 394
BpiI GAAGAC 4 cut(s) 337, 623, 879, 1200
Bpu10I CCTNAGC 1 cut(s) 459
Bpu1102I GCTNAGC 1 cut(s) 957
Bpu14I TTCGAA 1 cut(s) 625
BpuEI CTTGAG 4 cut(s) 335, 947, 1047, 1198
Bsa29I ATCGAT 1 cut(s) 1553
BsaHI GRCGYC 2 cut(s) 9, 153
BsaI GGTCTC 1 cut(s) 2519
BsaJI CCNNGG 7 cut(s) 60, 192, 193, 1840, 1978, 2197, 2529
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 125, 155
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 255, 464, 2319
Bse1I ACTGG 5 cut(s) 389, 510, 1572, 1639, 1830
Bse21I CCTNAGG 1 cut(s) 597
Bse3DI GCAATG 3 cut(s) 1416, 2097, 2562
BseBI CCWGG 2 cut(s) 194, 1980
BseCI ATCGAT 1 cut(s) 1553
BseDI CCNNGG 7 cut(s) 60, 192, 193, 1840, 1978, 2197, 2529
BseGI GGATG 1 cut(s) 982
BseLI CCNNNNNNNGG 4 cut(s) 147, 255, 464, 2319
BseMI GCAATG 3 cut(s) 1416, 2097, 2562
BseNI ACTGG 5 cut(s) 389, 510, 1572, 1639, 1830
BseRI GAGGAG 4 cut(s) 77, 160, 447, 1523
BseSI GKGCMC 1 cut(s) 51
BseYI CCCAGC 2 cut(s) 117, 2169
BsgI GTGCAG 4 cut(s) 435, 870, 923, 2232
BshFI GGCC 4 cut(s) 49, 248, 408, 2061
BshNI GGYRCC 2 cut(s) 1668, 1916
BshVI ATCGAT 1 cut(s) 1553
BsiHKAI GWGCWC 2 cut(s) 963, 1338
BsiHKCI CYCGRG 2 cut(s) 1337, 1356
BslFI GGGAC 2 cut(s) 58, 385
BslI CCNNNNNNNGG 4 cut(s) 147, 255, 464, 2319
BsmAI GTCTC 9 cut(s) 505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
BsmBI CGTCTC 2 cut(s) 1148, 1426
BsmFI GGGAC 2 cut(s) 58, 385
BsnI GGCC 4 cut(s) 49, 248, 408, 2061
Bso31I GGTCTC 1 cut(s) 2519
BsoBI CYCGRG 2 cut(s) 1337, 1356
Bsp119I TTCGAA 1 cut(s) 625
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 6 cut(s) 27, 51, 595, 963, 1338, 1979
Bsp1407I TGTACA 1 cut(s) 2065
Bsp143I GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
Bsp1720I GCTNAGC 1 cut(s) 957
Bsp19I CCATGG 2 cut(s) 1840, 2197
BspACI CCGC 9 cut(s) 27, 32, 96, 99, 102, 162, 181, 256, 1712
BspANI GGCC 4 cut(s) 49, 248, 408, 2061
BspDI ATCGAT 1 cut(s) 1553
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 6 cut(s) 49, 260, 594, 603, 1670, 1918
BspMAI CTGCAG 1 cut(s) 1021
BspPI GGATC 2 cut(s) 2218, 2252
BspQI GCTCTTC 3 cut(s) 975, 996, 1254
BspT104I TTCGAA 1 cut(s) 625
BspT107I GGYRCC 2 cut(s) 1668, 1916
BspTNI GGTCTC 1 cut(s) 2519
BsrBI CCGCTC 1 cut(s) 29
BsrDI GCAATG 3 cut(s) 1416, 2097, 2562
BsrGI TGTACA 1 cut(s) 2065
BsrI ACTGG 5 cut(s) 389, 510, 1572, 1639, 1830
BssECI CCNNGG 7 cut(s) 60, 192, 193, 1840, 1978, 2197, 2529
BssMI GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
BssNI GRCGYC 2 cut(s) 9, 153
BssT1I CCWWGG 2 cut(s) 1840, 2197
Bst2UI CCWGG 2 cut(s) 194, 1980
Bst4CI ACNGT 8 cut(s) 639, 972, 1524, 1545, 1673, 1781, 2385, 2471
Bst6I CTCTTC 6 cut(s) 975, 991, 996, 1254, 1809, 2025
BstACI GRCGYC 2 cut(s) 9, 153
BstAUI TGTACA 1 cut(s) 2065
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 5 cut(s) 23, 27, 181, 447, 1238
BstDSI CCRYGG 2 cut(s) 1840, 2197
BstF5I GGATG 1 cut(s) 982
BstHHI GCGC 3 cut(s) 57, 287, 699
BstKTI GATC 7 cut(s) 781, 837, 991, 1027, 1420, 2213, 2260
BstMAI GTCTC 9 cut(s) 505, 562, 1148, 1222, 1426, 1469, 2220, 2297, 2519
BstMBI GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
BstMWI GCNNNNNNNGC 9 cut(s) 31, 46, 110, 195, 284, 335, 515, 953, 1700
BstNI CCWGG 2 cut(s) 194, 1980
BstNSI RCATGY 2 cut(s) 1928, 1961
BstSCI CCNGG 2 cut(s) 192, 1978
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 1 cut(s) 51
BstV2I GAAGAC 4 cut(s) 337, 623, 879, 1200
BstX2I RGATCY 3 cut(s) 1024, 1417, 2210
BstYI RGATCY 3 cut(s) 1024, 1417, 2210
Bsu15I ATCGAT 1 cut(s) 1553
Bsu36I CCTNAGG 1 cut(s) 597
BsuI GTATCC 3 cut(s) 1621, 2029, 2569
BsuRI GGCC 4 cut(s) 49, 248, 408, 2061
BsuTUI ATCGAT 1 cut(s) 1553
BtgI CCRYGG 2 cut(s) 1840, 2197
BtrI CACGTC 1 cut(s) 1158
BtsCI GGATG 1 cut(s) 982
BtsI GCAGTG 3 cut(s) 292, 706, 1683
Cac8I GCNNGC 5 cut(s) 23, 27, 181, 447, 1238
CaiI CAGNNNCTG 2 cut(s) 899, 1892
CciI TCATGA 1 cut(s) 727
CfoI GCGC 3 cut(s) 57, 287, 699
Cfr13I GGNCC 7 cut(s) 47, 48, 407, 602, 639, 1719, 1889
ClaI ATCGAT 1 cut(s) 1553
CseI GACGC 3 cut(s) 142, 2096, 2321
Csp6I GTAC 9 cut(s) 422, 513, 1040, 1520, 1669, 1884, 2066, 2289, 2463
CviQI GTAC 9 cut(s) 422, 513, 1040, 1520, 1669, 1884, 2066, 2289, 2463
DpnI GATC 7 cut(s) 780, 836, 990, 1026, 1419, 2212, 2259
DpnII GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
DraIII CACNNNGTG 1 cut(s) 2345
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 6 cut(s) 975, 991, 996, 1254, 1809, 2025
EarI CTCTTC 6 cut(s) 975, 991, 996, 1254, 1809, 2025
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 2 cut(s) 961, 1336
Eco130I CCWWGG 2 cut(s) 1840, 2197
Eco24I GRGCYC 6 cut(s) 27, 51, 595, 963, 1338, 1979
Eco31I GGTCTC 1 cut(s) 2519
Eco32I GATATC 1 cut(s) 1786
Eco47I GGWCC 4 cut(s) 602, 639, 1719, 1889
Eco53kI GAGCTC 2 cut(s) 961, 1336
Eco57I CTGAAG 5 cut(s) 432, 936, 1121, 1662, 1959
Eco81I CCTNAGG 1 cut(s) 597
Eco88I CYCGRG 2 cut(s) 1337, 1356
EcoICRI GAGCTC 2 cut(s) 961, 1336
EcoO109I RGGNCCY 1 cut(s) 1889
EcoRI GAATTC 2 cut(s) 1402, 1823
EcoRII CCWGG 2 cut(s) 192, 1978
EcoRV GATATC 1 cut(s) 1786
EcoT14I CCWWGG 2 cut(s) 1840, 2197
EcoT38I GRGCYC 6 cut(s) 27, 51, 595, 963, 1338, 1979
ErhI CCWWGG 2 cut(s) 1840, 2197
Esp3I CGTCTC 2 cut(s) 1148, 1426
FalI AAGNNNNNCTT 2 cut(s) 1841, 1873
FaqI GGGAC 2 cut(s) 58, 385
FauI CCCGC 2 cut(s) 34, 188
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 272
FokI GGATG 1 cut(s) 989
FriOI GRGCYC 6 cut(s) 27, 51, 595, 963, 1338, 1979
FspBI CTAG 6 cut(s) 1200, 1241, 1394, 1452, 1689, 1746
FspI TGCGCA 1 cut(s) 698
GlaI GCGC 3 cut(s) 56, 286, 698
GsaI CCCAGC 2 cut(s) 121, 2173
HaeIII GGCC 4 cut(s) 49, 248, 408, 2061
HgaI GACGC 3 cut(s) 142, 2096, 2321
HhaI GCGC 3 cut(s) 57, 287, 699
Hin1I GRCGYC 2 cut(s) 9, 153
Hin6I GCGC 3 cut(s) 55, 285, 697
HinP1I GCGC 3 cut(s) 55, 285, 697
HincII GTYRAC 2 cut(s) 273, 1269
HindII GTYRAC 2 cut(s) 273, 1269
HindIII AAGCTT 2 cut(s) 945, 1133
HinfI GANTC 9 cut(s) 65, 269, 755, 1142, 2323, 2444, 2507, 2519, 2588
HphI GGTGA 7 cut(s) 79, 151, 569, 1814, 1819, 2003, 2516
Hpy166II GTNNAC 7 cut(s) 87, 273, 1163, 1269, 1805, 2398, 2540
Hpy8I GTNNAC 7 cut(s) 87, 273, 1163, 1269, 1805, 2398, 2540
Hpy99I CGWCG 2 cut(s) 11, 14
HpyAV CCTTC 9 cut(s) 307, 814, 1438, 1637, 1934, 2051, 2199, 2231, 2495
HpyCH4III ACNGT 8 cut(s) 639, 972, 1524, 1545, 1673, 1781, 2385, 2471
HpyCH4IV ACGT 4 cut(s) 9, 374, 424, 1157
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 46, 110, 195, 284, 335, 515, 953, 1700
HpySE526I ACGT 4 cut(s) 9, 374, 424, 1157
Hsp92I GRCGYC 2 cut(s) 9, 153
HspAI GCGC 3 cut(s) 55, 285, 697
KpnI GGTACC 1 cut(s) 1672
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
LguI GCTCTTC 3 cut(s) 975, 996, 1254
LmnI GCTCC 4 cut(s) 34, 62, 598, 2371
LweI GCATC 9 cut(s) 230, 235, 316, 347, 733, 805, 1048, 1078, 1545
MaeI CTAG 6 cut(s) 1200, 1241, 1394, 1452, 1689, 1746
MaeII ACGT 4 cut(s) 9, 374, 424, 1157
MaeIII GTNAC 4 cut(s) 701, 1762, 1991, 2108
MalI GATC 7 cut(s) 780, 836, 990, 1026, 1419, 2212, 2259
MbiI CCGCTC 1 cut(s) 29
MboI GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 3 cut(s) 1024, 1417, 2210
MhlI GDGCHC 6 cut(s) 27, 51, 595, 963, 1338, 1979
MlyI GAGTC 4 cut(s) 74, 278, 2438, 2513
MmeI TCCRAC 5 cut(s) 30, 198, 666, 954, 2575
MseI TTAA 4 cut(s) 813, 879, 1128, 2375
MslI CAYNNNNRTG 3 cut(s) 203, 732, 1779
MspA1I CMGCKG 1 cut(s) 518
MspR9I CCNGG 2 cut(s) 194, 1980
MunI CAATTG 1 cut(s) 684
MvaI CCWGG 2 cut(s) 194, 1980
MwoI GCNNNNNNNGC 9 cut(s) 31, 46, 110, 195, 284, 335, 515, 953, 1700
NcoI CCATGG 2 cut(s) 1840, 2197
NdeII GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
NlaIV GGNNCC 6 cut(s) 49, 260, 594, 603, 1670, 1918
NmuCI GTSAC 3 cut(s) 701, 1991, 2108
NsbI TGCGCA 1 cut(s) 698
NspI RCATGY 2 cut(s) 1928, 1961
NspV TTCGAA 1 cut(s) 625
PaeR7I CTCGAG 2 cut(s) 1337, 1356
PagI TCATGA 1 cut(s) 727
PasI CCCWGGG 1 cut(s) 193
PciSI GCTCTTC 3 cut(s) 975, 996, 1254
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 141, 371, 2559
PfeI GAWTC 5 cut(s) 755, 1142, 2323, 2507, 2588
PleI GAGTC 4 cut(s) 73, 277, 2438, 2513
PpsI GAGTC 4 cut(s) 73, 277, 2438, 2513
PpuMI RGGWCCY 1 cut(s) 1889
Psp124BI GAGCTC 2 cut(s) 963, 1338
Psp5II RGGWCCY 1 cut(s) 1889
Psp6I CCWGG 2 cut(s) 192, 1978
PspFI CCCAGC 2 cut(s) 117, 2169
PspGI CCWGG 2 cut(s) 192, 1978
PspN4I GGNNCC 6 cut(s) 49, 260, 594, 603, 1670, 1918
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 7 cut(s) 47, 48, 407, 602, 639, 1719, 1889
PspPPI RGGWCCY 1 cut(s) 1889
PstI CTGCAG 1 cut(s) 1021
PstNI CAGNNNCTG 2 cut(s) 899, 1892
PsuI RGATCY 3 cut(s) 1024, 1417, 2210
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 9 cut(s) 423, 514, 1041, 1521, 1670, 1885, 2067, 2290, 2464
RsaNI GTAC 9 cut(s) 422, 513, 1040, 1520, 1669, 1884, 2066, 2289, 2463
RseI CAYNNNNRTG 3 cut(s) 203, 732, 1779
SacI GAGCTC 2 cut(s) 963, 1338
SalI GTCGAC 1 cut(s) 271
SapI GCTCTTC 3 cut(s) 975, 996, 1254
SaqAI TTAA 4 cut(s) 813, 879, 1128, 2375
Sau3AI GATC 7 cut(s) 778, 834, 988, 1024, 1417, 2210, 2257
Sau96I GGNCC 7 cut(s) 47, 48, 407, 602, 639, 1719, 1889
ScaI AGTACT 1 cut(s) 2290
SchI GAGTC 4 cut(s) 74, 278, 2438, 2513
ScrFI CCNGG 2 cut(s) 194, 1980
SduI GDGCHC 6 cut(s) 27, 51, 595, 963, 1338, 1979
SfaNI GCATC 9 cut(s) 230, 235, 316, 347, 733, 805, 1048, 1078, 1545
SfcI CTRYAG 1 cut(s) 1017
Sfr274I CTCGAG 2 cut(s) 1337, 1356
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 4 cut(s) 602, 639, 1719, 1889
SlaI CTCGAG 2 cut(s) 1337, 1356
SmiMI CAYNNNNRTG 3 cut(s) 203, 732, 1779
SmlI CTYRAG 6 cut(s) 350, 962, 1062, 1177, 1337, 1356
SmoI CTYRAG 6 cut(s) 350, 962, 1062, 1177, 1337, 1356
SsiI CCGC 9 cut(s) 27, 32, 96, 99, 102, 162, 181, 256, 1712
SspI AATATT 2 cut(s) 1082, 2002
SspMI CTAG 6 cut(s) 1200, 1241, 1394, 1452, 1689, 1746
SstI GAGCTC 2 cut(s) 963, 1338
StyD4I CCNGG 2 cut(s) 192, 1978
StyI CCWWGG 2 cut(s) 1840, 2197
TaaI ACNGT 8 cut(s) 639, 972, 1524, 1545, 1673, 1781, 2385, 2471
TaiI ACGT 4 cut(s) 12, 377, 427, 1160
TaqI TCGA 7 cut(s) 272, 625, 870, 1282, 1338, 1357, 1553
TaqII GACCGA 1 cut(s) 2543
TatI WGTACW 5 cut(s) 512, 1039, 1519, 2065, 2288
TauI GCSGC 2 cut(s) 101, 104
TfiI GAWTC 5 cut(s) 755, 1142, 2323, 2507, 2588
Tru1I TTAA 4 cut(s) 813, 879, 1128, 2375
Tru9I TTAA 4 cut(s) 813, 879, 1128, 2375
TseFI GTSAC 3 cut(s) 701, 1991, 2108
Tsp45I GTSAC 3 cut(s) 701, 1991, 2108
TspGWI ACGGA 5 cut(s) 133, 662, 1985, 2335, 2581
VpaK11BI GGWCC 4 cut(s) 602, 639, 1719, 1889
XapI RAATTY 2 cut(s) 1402, 1823
XceI RCATGY 2 cut(s) 1928, 1961
XcmI CCANNNNNNNNNTGG 1 cut(s) 2204
XhoI CTCGAG 2 cut(s) 1337, 1356
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 6 cut(s) 1200, 1241, 1394, 1452, 1689, 1746
ZraI GACGTC 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 2290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.