Rmu_sc0008734.1_g000010

chromosome transmission fidelity

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008734.1
Physical Location & Seq
Reverse (-)
33800 .. 39798
5999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008734.1_g000010.1.cds

Sequence Viewer

Length: 1386 bp
atgaaaacaagttccattgcacttactgtacttgcagagcatacagaatgtgatatacgttcatgcttgaacactcttcagttcctgaacaagaagaaggaagcactcaacgcttgggatattggctctcaagtggttggtcgaaaggatatgtcaagaggtgtgtttgatgtctggaaagagatcttccaaaagagaaaaccgaagaggcagcaaagaacaaataacagttgtggaataatatctagtgaattcgactctttgcattctctcatttctcaccgtggtgattatgatttgattgtggatggtcttcatgaaaacgttttgcatcttccttatcatgatccagtgatgcaaaagactgtcaaatgcttgaatagccttggtgtctctgaccttatgaacaaatatattatgcgtacacaacatatgtccctttatgcttatcagcctgttattgccataattgtacatcgtttagtagcccaagtgcagagaccgaatattgaatggccaaaatcttattataggtaccggacaatgttaatggaaaaagtggacagtttgaagtcttggtacaacacaattccaccatctatttcaaggcatttttcaattaagtcctttgtagaagactcaatttcattgctgttacacatcctatcacccccaactctaaggctggcctcattgcacttattatcagagaaggagaagaatgatctggctcagttagttagcacgatggtctcctattctataacacatagaaggattaaagctgatcctgtgactggcaatctcgggcatcaagcagctgatgtgtcggagctgtcttttgatccccccattaatggctttgttaacttccagggctacagatctggccatcatgtacttgcctcaactatgaaacagatgttggcgcatgaggttgaaaagcaaaggattttgcaagcaagcattgggagatctgcacagttgacagatggatacaacaaggaaaaccatgcttctttaaggccagaaactaggagattacaatctggtagagctgatcatttaggtgcatcttctgtgaacaatggaaagtcagaaagcatgtcaaatcccagtagcggtgttttacctaacttgggcactgggaataccccagtgggtacaaagttaaactcttctggatgtatgagaaagccgtctggtggttcctctagtttctttgataggtttagaaagcttggtaaaggttctcagaacactgctgaggctgtgcggaaggaagcaacctctcagagagattcacgtcctttggtctttaaatttaatgagggctttacaaatgcagttaaaaggccagttcgtgttcgggagtttctgacgtaa
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

51.86

Weight (kDa)

9.77

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 534
AciI CCGC 2 cut(s) 1122, 1276
AclI AACGTT 1 cut(s) 324
AclWI GGATC 3 cut(s) 341, 782, 839
AcoI YGGCCR 2 cut(s) 515, 889
AcsI RAATTY 2 cut(s) 251, 1322
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 7 cut(s) 30, 424, 474, 536, 581, 900, 1165
AfiI CCNNNNNNNGG 5 cut(s) 797, 857, 1121, 1139, 1205
AgsI TTSAA 7 cut(s) 70, 379, 512, 571, 606, 618, 941
AjiI CACGTC 1 cut(s) 1307
AjnI CCWGG 1 cut(s) 873
AjuI GAANNNNNNNTTGG 2 cut(s) 908, 940
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 5 cut(s) 785, 821, 835, 1058, 1240
AluI AGCT 5 cut(s) 785, 821, 835, 1058, 1240
Alw26I GTCTC 3 cut(s) 397, 493, 757
AlwI GGATC 3 cut(s) 341, 782, 839
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 5 cut(s) 515, 687, 889, 1025, 1355
ApeKI GCWGC 2 cut(s) 211, 818
ApoI RAATTY 2 cut(s) 251, 1322
AseI ATTAAT 1 cut(s) 855
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 931
AsuHPI GGTGA 3 cut(s) 272, 299, 660
AvaI CYCGRG 1 cut(s) 806
BaeGI GKGCMC 1 cut(s) 1145
BalI TGGCCA 2 cut(s) 517, 891
BanI GGYRCC 1 cut(s) 534
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbsI GAAGAC 2 cut(s) 305, 642
BbvCI CCTCAGC 1 cut(s) 1266
BbvI GCAGC 2 cut(s) 223, 830
BccI CCATC 5 cut(s) 302, 604, 742, 900, 986
BceAI ACGGC 1 cut(s) 1183
BciT130I CCWGG 1 cut(s) 875
BciVI GTATCC 1 cut(s) 989
BclI TGATCA 1 cut(s) 1060
BcoDI GTCTC 3 cut(s) 397, 493, 757
BfaI CTAG 3 cut(s) 246, 1035, 1215
BfmI CTRYAG 1 cut(s) 880
BfuI GTATCC 1 cut(s) 989
BglII AGATCT 3 cut(s) 183, 884, 974
BisI GCNGC 2 cut(s) 212, 819
BlsI GCNGC 2 cut(s) 213, 820
Bme1390I CCNGG 1 cut(s) 875
BmeT110I CYCGRG 1 cut(s) 806
BmgBI CACGTC 1 cut(s) 1307
BmiI GGNNCC 2 cut(s) 536, 1210
BmrFI CCNGG 1 cut(s) 875
BmrI ACTGGG 3 cut(s) 1110, 1151, 1155
BmsI GCATC 4 cut(s) 340, 345, 820, 1082
BmuI ACTGGG 3 cut(s) 1110, 1151, 1155
BpiI GAAGAC 2 cut(s) 305, 642
Bpu10I CCTNAGC 1 cut(s) 1266
BpuEI CTTGAG 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 1045
BsaI GGTCTC 2 cut(s) 493, 757
BsaJI CCNNGG 3 cut(s) 283, 385, 874
BsaWI WCCGGW 1 cut(s) 537
Bsc4I CCNNNNNNNGG 5 cut(s) 797, 857, 1121, 1139, 1205
Bse1I ACTGG 6 cut(s) 350, 802, 1116, 1150, 1157, 1358
Bse3DI GCAATG 3 cut(s) 15, 647, 692
Bse8I GATNNNNATC 1 cut(s) 1045
BseBI CCWGG 1 cut(s) 875
BseDI CCNNGG 3 cut(s) 283, 385, 874
BseGI GGATG 3 cut(s) 313, 660, 1190
BseJI GATNNNNATC 1 cut(s) 1045
BseLI CCNNNNNNNGG 5 cut(s) 797, 857, 1121, 1139, 1205
BseMI GCAATG 3 cut(s) 15, 647, 692
BseMII CTCAG 4 cut(s) 746, 1257, 1268, 1307
BseNI ACTGG 6 cut(s) 350, 802, 1116, 1150, 1157, 1358
BseSI GKGCMC 1 cut(s) 1145
BseXI GCAGC 2 cut(s) 223, 830
BsgI GTGCAG 2 cut(s) 515, 963
BshFI GGCC 5 cut(s) 517, 689, 891, 1027, 1357
BshNI GGYRCC 1 cut(s) 534
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 1 cut(s) 538
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 5 cut(s) 797, 857, 1121, 1139, 1205
BsmAI GTCTC 3 cut(s) 397, 493, 757
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 5 cut(s) 517, 689, 891, 1027, 1357
Bso31I GGTCTC 2 cut(s) 493, 757
BsoBI CYCGRG 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 1145
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
BspACI CCGC 2 cut(s) 1122, 1276
BspANI GGCC 5 cut(s) 517, 689, 891, 1027, 1357
BspCNI CTCAG 4 cut(s) 745, 1258, 1267, 1306
BspHI TCATGA 2 cut(s) 316, 343
BspLI GGNNCC 2 cut(s) 536, 1210
BspPI GGATC 3 cut(s) 341, 782, 839
BspT107I GGYRCC 1 cut(s) 534
BspTNI GGTCTC 2 cut(s) 493, 757
BsrDI GCAATG 3 cut(s) 15, 647, 692
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 6 cut(s) 350, 802, 1116, 1150, 1157, 1358
BssECI CCNNGG 3 cut(s) 283, 385, 874
BssMI GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 1 cut(s) 875
Bst4CI ACNGT 6 cut(s) 28, 230, 284, 367, 566, 984
Bst6I CTCTTC 3 cut(s) 81, 200, 1183
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 3 cut(s) 687, 960, 964
BstDEI CTNAG 5 cut(s) 680, 732, 1254, 1266, 1293
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 3 cut(s) 313, 660, 1190
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 8 cut(s) 186, 349, 727, 790, 847, 887, 977, 1063
BstMAI GTCTC 3 cut(s) 397, 493, 757
BstMBI GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
BstMWI GCNNNNNNNGC 2 cut(s) 110, 381
BstNI CCWGG 1 cut(s) 875
BstNSI RCATGY 1 cut(s) 1108
BstSCI CCNGG 1 cut(s) 873
BstSFI CTRYAG 1 cut(s) 880
BstSLI GKGCMC 1 cut(s) 1145
BstV1I GCAGC 2 cut(s) 223, 830
BstV2I GAAGAC 2 cut(s) 305, 642
BstX2I RGATCY 3 cut(s) 183, 884, 974
BstYI RGATCY 3 cut(s) 183, 884, 974
BsuI GTATCC 1 cut(s) 989
BsuRI GGCC 5 cut(s) 517, 689, 891, 1027, 1357
BtgI CCRYGG 1 cut(s) 283
BtrI CACGTC 1 cut(s) 1307
BtsCI GGATG 3 cut(s) 313, 660, 1190
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 4 cut(s) 357, 1143, 1164, 1260
Cac8I GCNNGC 3 cut(s) 687, 960, 964
CaiI CAGNNNCTG 1 cut(s) 85
CciI TCATGA 2 cut(s) 316, 343
CfoI GCGC 1 cut(s) 931
Csp6I GTAC 7 cut(s) 29, 423, 473, 535, 580, 899, 1164
CviAII CATG 7 cut(s) 63, 317, 344, 896, 932, 1013, 1105
CviQI GTAC 7 cut(s) 29, 423, 473, 535, 580, 899, 1164
DdeI CTNAG 5 cut(s) 680, 732, 1254, 1266, 1293
DpnI GATC 8 cut(s) 185, 348, 726, 789, 846, 886, 976, 1062
DpnII GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
DraI TTTAAA 1 cut(s) 1321
EaeI YGGCCR 2 cut(s) 515, 889
Eam1104I CTCTTC 3 cut(s) 81, 200, 1183
EarI CTCTTC 3 cut(s) 81, 200, 1183
Eco130I CCWWGG 1 cut(s) 385
Eco31I GGTCTC 2 cut(s) 493, 757
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 873
EcoT14I CCWWGG 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 7 cut(s) 66, 320, 347, 899, 935, 1016, 1108
FaqI GGGAC 1 cut(s) 421
FatI CATG 7 cut(s) 62, 316, 343, 895, 931, 1012, 1104
FauNDI CATATG 1 cut(s) 432
FbaI TGATCA 1 cut(s) 1060
Fnu4HI GCNGC 2 cut(s) 212, 819
FokI GGATG 3 cut(s) 320, 647, 1197
Fsp4HI GCNGC 2 cut(s) 212, 819
FspBI CTAG 3 cut(s) 246, 1035, 1215
GlaI GCGC 1 cut(s) 930
GluI GCNGC 2 cut(s) 212, 819
HaeIII GGCC 5 cut(s) 517, 689, 891, 1027, 1357
HapII CCGG 1 cut(s) 538
HhaI GCGC 1 cut(s) 931
Hin1II CATG 7 cut(s) 66, 320, 347, 899, 935, 1016, 1108
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 2 cut(s) 868, 987
HindII GTYRAC 2 cut(s) 868, 987
HindIII AAGCTT 1 cut(s) 1238
HinfI GANTC 3 cut(s) 257, 638, 1301
HpaI GTTAAC 1 cut(s) 868
HpaII CCGG 1 cut(s) 538
HphI GGTGA 3 cut(s) 272, 299, 660
Hpy166II GTNNAC 5 cut(s) 425, 562, 868, 987, 1084
Hpy188I TCNGA 7 cut(s) 397, 709, 832, 1099, 1257, 1296, 1380
Hpy188III TCNNGA 7 cut(s) 85, 156, 175, 317, 344, 1182, 1370
Hpy8I GTNNAC 5 cut(s) 425, 562, 868, 987, 1084
HpyAV CCTTC 4 cut(s) 91, 706, 768, 1273
HpyCH4III ACNGT 6 cut(s) 28, 230, 284, 367, 566, 984
HpyCH4IV ACGT 4 cut(s) 58, 324, 1306, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 381
HpyF3I CTNAG 5 cut(s) 680, 732, 1254, 1266, 1293
HpySE526I ACGT 4 cut(s) 58, 324, 1306, 1382
Hsp92II CATG 7 cut(s) 66, 320, 347, 899, 935, 1016, 1108
HspAI GCGC 1 cut(s) 929
KpnI GGTACC 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 1060
KspAI GTTAAC 1 cut(s) 868
Kzo9I GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 2 cut(s) 223, 830
LweI GCATC 4 cut(s) 340, 345, 820, 1082
MaeI CTAG 3 cut(s) 246, 1035, 1215
MaeII ACGT 4 cut(s) 58, 324, 1306, 1382
MaeIII GTNAC 2 cut(s) 654, 793
MalI GATC 8 cut(s) 185, 348, 726, 789, 846, 886, 976, 1062
MboI GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
MflI RGATCY 3 cut(s) 183, 884, 974
MhlI GDGCHC 1 cut(s) 1145
MlsI TGGCCA 2 cut(s) 517, 891
MluCI AATT 6 cut(s) 251, 468, 588, 618, 642, 1322
MluNI TGGCCA 2 cut(s) 517, 891
MlyI GAGTC 2 cut(s) 251, 632
MmeI TCCRAC 1 cut(s) 810
MnlI CCTC 9 cut(s) 152, 201, 700, 916, 928, 1222, 1261, 1300, 1324
Mox20I TGGCCA 2 cut(s) 517, 891
MscI TGGCCA 2 cut(s) 517, 891
MslI CAYNNNNRTG 2 cut(s) 285, 1068
Msp20I TGGCCA 2 cut(s) 517, 891
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 1 cut(s) 538
MspR9I CCNGG 1 cut(s) 875
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 875
MwoI GCNNNNNNNGC 2 cut(s) 110, 381
NdeI CATATG 1 cut(s) 432
NdeII GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
NlaIII CATG 7 cut(s) 66, 320, 347, 899, 935, 1016, 1108
NlaIV GGNNCC 2 cut(s) 536, 1210
NmuCI GTSAC 1 cut(s) 793
NspI RCATGY 1 cut(s) 1108
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 2 cut(s) 316, 343
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 1301
PkrI GCNGC 2 cut(s) 213, 820
PleI GAGTC 2 cut(s) 251, 632
PpsI GAGTC 2 cut(s) 251, 632
PshBI ATTAAT 1 cut(s) 855
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 873
PspGI CCWGG 1 cut(s) 873
PspN4I GGNNCC 2 cut(s) 536, 1210
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 3 cut(s) 183, 884, 974
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 7 cut(s) 30, 424, 474, 536, 581, 900, 1165
RsaNI GTAC 7 cut(s) 29, 423, 473, 535, 580, 899, 1164
RseI CAYNNNNRTG 2 cut(s) 285, 1068
SatI GCNGC 2 cut(s) 212, 819
Sau3AI GATC 8 cut(s) 183, 346, 724, 787, 844, 884, 974, 1060
SchI GAGTC 2 cut(s) 251, 632
ScrFI CCNGG 1 cut(s) 875
SduI GDGCHC 1 cut(s) 1145
SfaNI GCATC 4 cut(s) 340, 345, 820, 1082
SfcI CTRYAG 1 cut(s) 880
SmiMI CAYNNNNRTG 2 cut(s) 285, 1068
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 6 cut(s) 251, 468, 588, 618, 642, 1322
SsiI CCGC 2 cut(s) 1122, 1276
SspI AATATT 1 cut(s) 508
SspMI CTAG 3 cut(s) 246, 1035, 1215
StyD4I CCNGG 1 cut(s) 873
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 6 cut(s) 28, 230, 284, 367, 566, 984
TaiI ACGT 4 cut(s) 61, 327, 1309, 1385
TaqI TCGA 2 cut(s) 142, 255
TaqII GACCGA 1 cut(s) 517
TasI AATT 6 cut(s) 251, 468, 588, 618, 642, 1322
TatI WGTACW 3 cut(s) 28, 472, 898
TfiI GAWTC 1 cut(s) 1301
TscAI CASTG 4 cut(s) 357, 1150, 1164, 1267
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 2 cut(s) 211, 818
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 7 cut(s) 17, 51, 305, 333, 419, 636, 929
TspRI CASTG 4 cut(s) 357, 1150, 1164, 1267
VspI ATTAAT 1 cut(s) 855
XapI RAATTY 2 cut(s) 251, 1322
XceI RCATGY 1 cut(s) 1108
XspI CTAG 3 cut(s) 246, 1035, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.