Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009491.1

Orthogroup ID

OG0016472

Physical Location & Seq

Genomic Coordinates Reverse (-)

17899 .. 19255

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009491.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgatgggatgctgcagttgctttggtttctctattgctagaaagcccaaaccgaaaaggaagcctagttatagctatagtaatcacccttcacaggagcatttgttggatgatgatttagaagatgatgatgattgttcatataatgatgatgctacaagtatgggcaatgctgaagaaagtgagcagcaaagtcgtgccaaacgtcctgatgagatactaagtttcagagaacagaatggaatgatttgcaggcagtaccctgtgaaggaaacccacaaagttgttcgcacagaggatgatgatgggaataagatggtcaatgagtacgttcgggagtgtaagattggttctggcagttatgggaaagtggttttgtatcgaagccttgtagatggaaagcattatgcactaaaggcgtttcataaatctcatttattaaaactccgggttgcaccttcggagacagctaaattttgtctggagccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

163

Amino Acids

18.61

Weight (kDa)

6.3

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016472)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009491.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032890
rosa_samantha	Rh4DG161100 Rh4DG221900 Rh5BG553900 Rh5CG577000 Rh6AG178700 Rh7AG420500 Rh7CG440400 Rh7DG171600
rosa_wichuraiana	Rw1G014020 Rw2G018650 Rw4G008060 Rw4G012700 Rw7G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	260, 329
AfiI	CCNNNNNNNGG	2 cut(s)	94, 268
AluBI	AGCT	2 cut(s)	75, 470
AluI	AGCT	2 cut(s)	75, 470
Alw26I	GTCTC	1 cut(s)	458
ApeKI	GCWGC	2 cut(s)	12, 187
ApoI	RAATTY	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	299, 310, 389
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	39, 66
BfmI	CTRYAG	2 cut(s)	13, 76
BisI	GCNGC	2 cut(s)	13, 188
BlsI	GCNGC	2 cut(s)	14, 189
Bme1390I	CCNGG	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 268
Bse3DI	GCAATG	1 cut(s)	175
BseGI	GGATG	3 cut(s)	14, 115, 304
BseLI	CCNNNNNNNGG	2 cut(s)	94, 268
BseMI	GCAATG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	94, 268
BsmAI	GTCTC	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	486
BspMAI	CTGCAG	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	221, 489
BstF5I	GGATG	3 cut(s)	14, 115, 304
BstMAI	GTCTC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 416
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	2 cut(s)	13, 76
BstV1I	GCAGC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	14, 115, 304
Cac8I	GCNNGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	259, 328
CviJI	RGCY	6 cut(s)	46, 64, 75, 387, 470, 487
CviKI_1	RGCY	6 cut(s)	46, 64, 75, 387, 470, 487
CviQI	GTAC	2 cut(s)	259, 328
DdeI	CTNAG	2 cut(s)	221, 489
Eco57I	CTGAAG	1 cut(s)	195
FaiI	YATR	8 cut(s)	72, 78, 142, 144, 164, 363, 408, 426
Fnu4HI	GCNGC	2 cut(s)	13, 188
FokI	GGATG	3 cut(s)	21, 122, 311
Fsp4HI	GCNGC	2 cut(s)	13, 188
FspBI	CTAG	2 cut(s)	39, 66
GluI	GCNGC	2 cut(s)	13, 188
HapII	CCGG	1 cut(s)	448
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	230, 463
Hpy188III	TCNNGA	3 cut(s)	209, 335, 482
HpyAV	CCTTC	3 cut(s)	99, 262, 468
HpyCH4IV	ACGT	2 cut(s)	205, 330
HpyCH4V	TGCA	4 cut(s)	15, 252, 410, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 416
HpyF3I	CTNAG	2 cut(s)	221, 489
HpySE526I	ACGT	2 cut(s)	205, 330
LmnI	GCTCC	2 cut(s)	97, 484
LpnPI	CCDG	7 cut(s)	80, 222, 238, 276, 339, 461, 467
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	39, 66
MaeII	ACGT	2 cut(s)	205, 330
MboII	GAAGA	2 cut(s)	134, 188
MluCI	AATT	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	289
MseI	TTAA	1 cut(s)	440
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	18, 416
NciI	CCSGG	1 cut(s)	449
NlaIV	GGNNCC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	14, 189
PspN4I	GGNNCC	1 cut(s)	486
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PstI	CTGCAG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	260, 329
RsaNI	GTAC	2 cut(s)	259, 328
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	2 cut(s)	13, 188
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	5 cut(s)	77, 208, 333, 460, 472
SfaNI	GCATC	1 cut(s)	142
SfcI	CTRYAG	2 cut(s)	13, 76
Sse9I	AATT	1 cut(s)	473
SspMI	CTAG	2 cut(s)	39, 66
StyD4I	CCNGG	1 cut(s)	447
TaiI	ACGT	2 cut(s)	208, 333
TaqI	TCGA	1 cut(s)	382
TasI	AATT	1 cut(s)	473
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TseI	GCWGC	2 cut(s)	12, 187
TspDTI	ATGAA	2 cut(s)	129, 413
XapI	RAATTY	1 cut(s)	473
XspI	CTAG	2 cut(s)	39, 66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.