Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016472

Physical Location & Seq

Genomic Coordinates Reverse (-)

81701368 .. 81733735

Gene Structure 32368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG577000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAATTCGTCGACAATAGTGATCTGCGGGAGACCGGAGTTGGCGAAGATAGTCAACGGCAAAGTCGAAAGAATCTAGGAGATCCAGTTGATTATGTGAGATTTGGAGTTGCTGATTTGGAGTCTTGGATTTGGGCTAGGGCTCTGGTATTAGACCTCGAGCTTGAGCTCCGATCTGACCTCGAGCTTATTAGCCGACCTGAGCTTGTCATTCTCCAACAGGAAGATCGGGAGTTGAAGTCTGCTAAACCCATTGATGGTGCTGCAAGAAAGAGGTACAAACCAAGACCCATGAGGGCTGAAAGAGGCAATGAGTTGCATAATGGGAAGTTGATTGTGCAGAATTGCGGATTTCGGAGTTGGCCTGATGGGATTCAGTCAATGGCTCTCTCGCTATTTCCTTTATCAATAATGTTGGGGTTGATTGATTTTGATTACAGGGTTCCGTCTCTCCTTCTCAGTGGGAAAGATTGGATTTTTATTGGGATTTTCCATCAACAAGGAGTCTGTGTCTCTCTGAATACAGGACAAGGTCAACTTATTGTTGGTTGGGGTGGTGTGGCCCTCTCCCCTCCCTCTGTAAAATCAGGTTTTGGAGAAAAAATTTGGTTTTGGTTGGGAGCTATAGTAACTACTTCACACATCAAGTTTCTGATGATCCATAAGAGTGTCTGTATTGCTAGAATGATGGGATGCTGCAGTTGCTTTGGTTTCTCTATTGCTAGAAAGCCCAAACCGAAAAGGAAGCCTAGTTATAGCTATAGTAATCACCCTTCACAGGAGCATTTGTTGGATGATGATTTAGAAGATGATGATGATTGTTCATATAATGATGATGCTACAAGTATGGGCAATGCTGAAGAAAGTGAGCAGCAAAGTCGTGCCAAACGTCCTGATGAGATACTAAGTTTCAGAGAACAGAATGGAATGATTTGCAGGCAGTACCCTGTGAAGGAAACCCACAAAGTTGTTCGCACAGAGGATGATGATGGGAATAAGATGGTCAATGAGTATGTTCGGGAGTGTAAGATTGGTTCTGGCAGTTATGGGAAAGTGGTTTTGTATCGAAGCCTTGTAGATGGAAAGCATTATGCACTAAAGGCGTTTCATAAATCTCATTTATTAAAACTCCGGGTTGCACCTTCGGAGACAGCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

387

Amino Acids

43.79

Weight (kDa)

6.8

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016472)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009491.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032890
rosa_samantha	Rh4DG161100 Rh4DG221900 Rh5BG553900 Rh5CG577000 Rh6AG178700 Rh7AG420500 Rh7CG440400 Rh7DG171600
rosa_wichuraiana	Rw1G014020 Rw2G018650 Rw4G008060 Rw4G012700 Rw7G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	2 cut(s)	28, 348
AclWI	GGATC	2 cut(s)	77, 652
AcsI	RAATTY	3 cut(s)	5, 603, 1157
AcuI	CTGAAG	1 cut(s)	879
AfaI	GTAC	2 cut(s)	278, 944
AfiI	CCNNNNNNNGG	3 cut(s)	257, 778, 952
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	7 cut(s)	163, 169, 187, 205, 623, 759, 1154
AluI	AGCT	7 cut(s)	163, 169, 187, 205, 623, 759, 1154
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	4 cut(s)	26, 453, 517, 1142
AlwI	GGATC	2 cut(s)	77, 652
Ama87I	CYCGRG	2 cut(s)	158, 182
AoxI	GGCC	2 cut(s)	362, 561
ApeKI	GCWGC	3 cut(s)	263, 696, 871
ApoI	RAATTY	3 cut(s)	5, 603, 1157
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	1133
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	2 cut(s)	158, 182
BanII	GRGCYC	2 cut(s)	145, 171
BarI	GAAGNNNNNNTAC	2 cut(s)	757, 789
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	250, 683, 883
BccI	CCATC	7 cut(s)	251, 362, 501, 682, 983, 994, 1073
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	860, 894
BcnI	CCSGG	1 cut(s)	1133
BcoDI	GTCTC	4 cut(s)	26, 453, 517, 1142
BfaI	CTAG	5 cut(s)	77, 138, 681, 723, 750
BfmI	CTRYAG	3 cut(s)	624, 697, 760
BisI	GCNGC	3 cut(s)	264, 697, 872
BlsI	GCNGC	3 cut(s)	265, 698, 873
Bme1390I	CCNGG	1 cut(s)	1133
BmeT110I	CYCGRG	2 cut(s)	158, 182
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	1133
BmsI	GCATC	2 cut(s)	683, 826
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	1133
BsaI	GGTCTC	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 778, 952
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	2 cut(s)	316, 859
BseGI	GGATG	3 cut(s)	698, 799, 988
BseLI	CCNNNNNNNGG	3 cut(s)	257, 778, 952
BseMI	GCAATG	2 cut(s)	316, 859
BseMII	CTCAG	2 cut(s)	192, 472
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	250, 683, 883
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	364, 563
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	2 cut(s)	158, 182
BsiSI	CCGG	2 cut(s)	36, 1132
BslI	CCNNNNNNNGG	3 cut(s)	257, 778, 952
BsmAI	GTCTC	4 cut(s)	26, 453, 517, 1142
BsmBI	CGTCTC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	364, 563
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	2 cut(s)	158, 182
Bsp1286I	GDGCHC	2 cut(s)	145, 171
Bsp143I	GATC	5 cut(s)	22, 82, 173, 226, 657
BspACI	CCGC	2 cut(s)	28, 348
BspANI	GGCC	2 cut(s)	364, 563
BspCNI	CTCAG	2 cut(s)	193, 471
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	701
BspPI	GGATC	2 cut(s)	77, 652
BspTNI	GGTCTC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	316, 859
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	5 cut(s)	22, 82, 173, 226, 657
BstC8I	GCNNGC	1 cut(s)	938
BstDEI	CTNAG	3 cut(s)	201, 458, 905
BstF5I	GGATG	3 cut(s)	698, 799, 988
BstKTI	GATC	5 cut(s)	25, 85, 176, 229, 660
BstMAI	GTCTC	4 cut(s)	26, 453, 517, 1142
BstMBI	GATC	5 cut(s)	22, 82, 173, 226, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	702, 1100
BstSCI	CCNGG	1 cut(s)	1131
BstSFI	CTRYAG	3 cut(s)	624, 697, 760
BstV1I	GCAGC	3 cut(s)	250, 683, 883
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	364, 563
BtsCI	GGATG	3 cut(s)	698, 799, 988
BtsIMutI	CAGTG	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	938
Cfr13I	GGNCC	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	277, 943
CviAII	CATG	1 cut(s)	292
CviQI	GTAC	2 cut(s)	277, 943
DdeI	CTNAG	3 cut(s)	201, 458, 905
DpnI	GATC	5 cut(s)	24, 84, 175, 228, 659
DpnII	GATC	5 cut(s)	22, 82, 173, 226, 657
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	2 cut(s)	145, 171
Eco31I	GGTCTC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	879
Eco88I	CYCGRG	2 cut(s)	158, 182
EcoICRI	GAGCTC	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	2 cut(s)	145, 171
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	1 cut(s)	295
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FatI	CATG	1 cut(s)	291
FauI	CCCGC	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	264, 697, 872
FokI	GGATG	3 cut(s)	705, 806, 995
FriOI	GRGCYC	2 cut(s)	145, 171
Fsp4HI	GCNGC	3 cut(s)	264, 697, 872
FspBI	CTAG	5 cut(s)	77, 138, 681, 723, 750
GluI	GCNGC	3 cut(s)	264, 697, 872
HaeIII	GGCC	2 cut(s)	364, 563
HapII	CCGG	2 cut(s)	36, 1132
Hin1II	CATG	1 cut(s)	295
HincII	GTYRAC	3 cut(s)	13, 56, 536
HindII	GTYRAC	3 cut(s)	13, 56, 536
HinfI	GANTC	4 cut(s)	73, 122, 373, 504
HpaII	CCGG	2 cut(s)	36, 1132
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	3 cut(s)	13, 56, 536
Hpy188I	TCNGA	7 cut(s)	173, 178, 357, 519, 654, 914, 1147
Hpy188III	TCNNGA	3 cut(s)	230, 893, 1019
Hpy8I	GTNNAC	3 cut(s)	13, 56, 536
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	464, 783, 946, 1152
HpyCH4IV	ACGT	1 cut(s)	889
HpyCH4V	TGCA	7 cut(s)	266, 319, 340, 699, 936, 1094, 1139
HpyF10VI	GCNNNNNNNGC	2 cut(s)	702, 1100
HpyF3I	CTNAG	3 cut(s)	201, 458, 905
HpySE526I	ACGT	1 cut(s)	889
Hsp92II	CATG	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	22, 82, 173, 226, 657
LmnI	GCTCC	3 cut(s)	174, 620, 781
Lsp1109I	GCAGC	3 cut(s)	250, 683, 883
LweI	GCATC	2 cut(s)	683, 826
MaeI	CTAG	5 cut(s)	77, 138, 681, 723, 750
MaeII	ACGT	1 cut(s)	889
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	5 cut(s)	24, 84, 175, 228, 659
MboI	GATC	5 cut(s)	22, 82, 173, 226, 657
MboII	GAAGA	4 cut(s)	59, 236, 818, 872
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	145, 171
MluCI	AATT	4 cut(s)	5, 343, 603, 1157
MlyI	GAGTC	2 cut(s)	131, 513
MmeI	TCCRAC	2 cut(s)	241, 771
MnlI	CCTC	9 cut(s)	167, 191, 267, 288, 299, 575, 582, 586, 973
MseI	TTAA	1 cut(s)	1124
MslI	CAYNNNNRTG	1 cut(s)	666
MspI	CCGG	2 cut(s)	36, 1132
MspR9I	CCNGG	1 cut(s)	1133
MwoI	GCNNNNNNNGC	2 cut(s)	702, 1100
NciI	CCSGG	1 cut(s)	1133
NdeII	GATC	5 cut(s)	22, 82, 173, 226, 657
NlaIII	CATG	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	444
PaeR7I	CTCGAG	2 cut(s)	158, 182
PcsI	WCGNNNNNNNCGW	2 cut(s)	64, 886
PfeI	GAWTC	2 cut(s)	73, 373
PflFI	GACNNNGTC	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	265, 698, 873
PleI	GAGTC	2 cut(s)	130, 512
PpsI	GAGTC	2 cut(s)	130, 512
Psp124BI	GAGCTC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	1 cut(s)	562
PspXI	VCTCGAGB	2 cut(s)	158, 182
PsrI	GAACNNNNNNTAC	2 cut(s)	1018, 1050
PstI	CTGCAG	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	531
RsaI	GTAC	2 cut(s)	278, 944
RsaNI	GTAC	2 cut(s)	277, 943
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	1124
SatI	GCNGC	3 cut(s)	264, 697, 872
Sau3AI	GATC	5 cut(s)	22, 82, 173, 226, 657
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	2 cut(s)	131, 513
ScrFI	CCNGG	1 cut(s)	1133
SduI	GDGCHC	2 cut(s)	145, 171
SfaNI	GCATC	2 cut(s)	683, 826
SfcI	CTRYAG	3 cut(s)	624, 697, 760
Sfr274I	CTCGAG	2 cut(s)	158, 182
SlaI	CTCGAG	2 cut(s)	158, 182
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	3 cut(s)	158, 164, 182
SmoI	CTYRAG	3 cut(s)	158, 164, 182
Sse9I	AATT	4 cut(s)	5, 343, 603, 1157
SsiI	CCGC	2 cut(s)	28, 348
SspMI	CTAG	5 cut(s)	77, 138, 681, 723, 750
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	1131
TaiI	ACGT	1 cut(s)	892
TaqI	TCGA	5 cut(s)	12, 67, 159, 183, 1066
TasI	AATT	4 cut(s)	5, 343, 603, 1157
TfiI	GAWTC	2 cut(s)	73, 373
Tru1I	TTAA	1 cut(s)	1124
Tru9I	TTAA	1 cut(s)	1124
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	3 cut(s)	263, 696, 871
TspDTI	ATGAA	2 cut(s)	813, 1097
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	1 cut(s)	466
Tth111I	GACNNNGTC	1 cut(s)	531
XapI	RAATTY	3 cut(s)	5, 603, 1157
XhoI	CTCGAG	2 cut(s)	158, 182
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	5 cut(s)	77, 138, 681, 723, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.