Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0016472

Physical Location & Seq

Genomic Coordinates Reverse (-)

56551316 .. 56554206

Gene Structure 2891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG420500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACATTCAATTCTGGCGATTGTGCCATCCTAGGGGTTCCGTCTCTCCTTCTCAGTGGGAAAGATTGGATTTTTATTGGGATTTTCCATCAACAAGGAGTCTGCGTCTCTCTGAATACAGGACAAGGTCAACTTATTGTTGGTTGGGGTGGTGTGGCCCTCTCCCCTCCCTCTGTAAAATCAGGTTTTGGAGAAAAAATTTGGTTTTGGTTGGGAGCTATAGTAACTACTTCACACATCAATATGGGCAATGCTGAAGAAAGTGAGCAGCAAAGTCGTGCCAAACGTCCTGATGAGATACTAAGTTTCAGAGAACAGAATGGAATGATTTGCAGGCAGTACCCTGTGAAGGAAACCCACAAAGTTGTTCGCACAGAGGATGATGATGGGAATAAGATGGTCAATGAGTATGTTCGGGAGTGTAAGATTGGTTCTGGCAGTTATGGGAAAGTGGTTTTGTATCGAAGCCTTGTAGATGGAAAGCATTATGCACTAAAGGCGTTTCATAAATCTCATTTATTAAAACTCCGGGTTGCACCTTCGGAGACAGCTAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

186

Amino Acids

20.6

Weight (kDa)

8.87

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016472)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0009491.1_g000003
rosa_roxburghii	Rroxscaffold_1G00032890
rosa_samantha	Rh4DG161100 Rh4DG221900 Rh5BG553900 Rh5CG577000 Rh6AG178700 Rh7AG420500 Rh7CG440400 Rh7DG171600
rosa_wichuraiana	Rw1G014020 Rw2G018650 Rw4G008060 Rw4G012700 Rw7G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	198, 554
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	33, 349
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	2 cut(s)	218, 551
AluI	AGCT	2 cut(s)	218, 551
Alw26I	GTCTC	3 cut(s)	48, 112, 539
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	198, 554
AspA2I	CCTAGG	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	530
AvrII	CCTAGG	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	5 cut(s)	35, 96, 380, 391, 470
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	48, 112, 539
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	1 cut(s)	269
BlnI	CCTAGG	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	530
BsaJI	CCNNGG	1 cut(s)	31
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 349
Bse3DI	GCAATG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	27, 385
BseLI	CCNNNNNNNGG	2 cut(s)	33, 349
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	529
BslI	CCNNNNNNNGG	2 cut(s)	33, 349
BsmAI	GTCTC	3 cut(s)	48, 112, 539
BsmBI	CGTCTC	2 cut(s)	48, 112
BsnI	GGCC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	53, 302
BstF5I	GGATG	2 cut(s)	27, 385
BstMAI	GTCTC	3 cut(s)	48, 112, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	2 cut(s)	27, 385
BtsIMutI	CAGTG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	340
CviJI	RGCY	4 cut(s)	158, 218, 468, 551
CviKI_1	RGCY	4 cut(s)	158, 218, 468, 551
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	53, 302
Eco130I	CCWWGG	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	2 cut(s)	48, 112
FaiI	YATR	6 cut(s)	221, 245, 411, 444, 489, 507
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	2 cut(s)	14, 392
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	529
HgaI	GACGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	99
HpaII	CCGG	1 cut(s)	529
Hpy166II	GTNNAC	1 cut(s)	131
Hpy188I	TCNGA	3 cut(s)	114, 311, 544
Hpy188III	TCNNGA	2 cut(s)	290, 416
Hpy8I	GTNNAC	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	59, 343, 549
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	333, 491, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	53, 302
HpySE526I	ACGT	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	7 cut(s)	105, 168, 303, 319, 357, 420, 542
Lsp1109I	GCAGC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	269
MluCI	AATT	3 cut(s)	10, 198, 554
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	4 cut(s)	170, 177, 181, 370
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	1 cut(s)	242
MspI	CCGG	1 cut(s)	529
MspR9I	CCNGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	530
NlaIV	GGNNCC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PflFI	GACNNNGTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	415, 447
PsyI	GACNNNGTC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	1 cut(s)	269
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	530
SetI	ASST	6 cut(s)	130, 187, 220, 289, 541, 553
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	10, 198, 554
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	463
TasI	AATT	3 cut(s)	10, 198, 554
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	61
Tth111I	GACNNNGTC	1 cut(s)	126
XapI	RAATTY	2 cut(s)	198, 554
XmaJI	CCTAGG	1 cut(s)	31
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.