Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009766.1

Orthogroup ID

OG0007948

Physical Location & Seq

Genomic Coordinates Forward (+)

1527 .. 3425

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009766.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggcggtctttctccgacgcggattctcaatccgaaacgcgcttctccgacgaagctcagctctgtacggctgcgatctcccgctctgcaactcagagacgccgcaaaggattctctctcctccggctcttgaatttctgaaagaaagtcgcagaggcttcgccaaaggccgtaaatcaaaagatgaatcgtctggaactacaatggaggttttaccagatatgggacccaccatcaaggccaatgcgacctcacatatggaggctgccattgcagcattgtcagtagaactgagcaaactacgcaccggaagagcatcaccaggtggatttgtcagttctcatttgccgaattttcgaatgctggaccacattattgtggaaaccagtgggttgaagctgcccttgcatcagatagcggttgtttcagtcatggattcaaaaaccttatcgatcaatccgtttgatccaaatgccttgaaaaatatagagactgccattgttgaatgtcccttgggtttaaatcctaaaaccgatggggagcgattgattgctgctattcctccattgaccaaggagcatgttcaggctatctgtaaagtggttaacaagtcttgtgaagatggcagactaagcataagaagaggtcgccaaaaggcaatggatacaattaaaaagctatattcaagctaccctaaggacgacttaaaaagactggagaaagaggttgaggagctgactaaaaagcataacaagaaagcagaggacttgtgcaaggcaaaggagaaggagattgctggtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRF

Protein Analysis

268

Amino Acids

29.5

Weight (kDa)

9.46

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01800
fragaria_vesca	FvH4_6g53070 FvH4_6g53070 FvH4_6g53070 FvH4_6g53070 FvH4_6g53070 FvH4_6g53070
malus_domestica	MD09G1014900.v1.1 MD17G1015000.v1.1
prunus_persica	Prupe.3G302800_v2.0.a1
pyrus_communis	pycom17g01210
rosa_chinensis	RchiOBHm_Chr2g0174851
rosa_laevigata	RLG00000022301
rosa_multiflora	Rmu_sc0009766.1_g000001 Rmu_sc0036631.1_g000002
rosa_roxburghii	Rroxscaffold_2G00077640
rosa_rugosa	Rorug02G0579800 Rorug02G0579900 Rorug02G0580000
rosa_samantha	Rh2AG661100 Rh2BG672500 Rh2CG635300 Rh2DG685600
rosa_wichuraiana	Rw2G054180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AccII	CGCG	2 cut(s)	21, 41
AciI	CCGC	5 cut(s)	5, 21, 83, 104, 419
AclWI	GGATC	1 cut(s)	461
AcsI	RAATTY	2 cut(s)	134, 352
AcyI	GRCGYC	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	6 cut(s)	134, 397, 441, 481, 506, 687
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	6 cut(s)	57, 62, 400, 679, 690, 736
AluI	AGCT	6 cut(s)	57, 62, 400, 679, 690, 736
Alw26I	GTCTC	2 cut(s)	92, 485
AlwI	GGATC	1 cut(s)	461
AoxI	GGCC	2 cut(s)	169, 240
ApeKI	GCWGC	5 cut(s)	72, 266, 275, 400, 554
ApoI	RAATTY	2 cut(s)	134, 352
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	227, 367
AsuHPI	GGTGA	1 cut(s)	312
AsuII	TTCGAA	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	227, 367
AxyI	CCTNAGG	1 cut(s)	696
BbvI	GCAGC	5 cut(s)	59, 253, 287, 387, 541
BccI	CCATC	3 cut(s)	242, 530, 617
BceAI	ACGGC	2 cut(s)	85, 156
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	324
BciVI	GTATCC	1 cut(s)	658
BcoDI	GTCTC	2 cut(s)	92, 485
BfuI	GTATCC	1 cut(s)	658
BisI	GCNGC	6 cut(s)	73, 104, 267, 276, 401, 555
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	6 cut(s)	74, 105, 268, 277, 402, 556
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	2 cut(s)	227, 367
BmgT120I	GGNCC	2 cut(s)	227, 367
BmiI	GGNNCC	2 cut(s)	228, 229
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	326, 418
BpmI	CTGGAG	1 cut(s)	737
Bpu1102I	GCTNAGC	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	358
Bsa29I	ATCGAT	1 cut(s)	452
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	513, 573
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	387, 720
Bse21I	CCTNAGG	1 cut(s)	696
Bse3DI	GCAATG	2 cut(s)	270, 666
BseBI	CCWGG	1 cut(s)	324
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	2 cut(s)	513, 573
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	2 cut(s)	270, 666
BseMII	CTCAG	3 cut(s)	72, 108, 284
BseNI	ACTGG	2 cut(s)	387, 720
BseRI	GAGGAG	2 cut(s)	111, 746
BseXI	GCAGC	5 cut(s)	59, 253, 287, 387, 541
Bsh1236I	CGCG	2 cut(s)	21, 41
BshFI	GGCC	2 cut(s)	171, 242
BshVI	ATCGAT	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	125, 309
BslFI	GGGAC	2 cut(s)	240, 495
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	92, 485
BsmBI	CGTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	240, 495
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	2 cut(s)	171, 242
Bsp119I	TTCGAA	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	76, 453, 466
Bsp1720I	GCTNAGC	1 cut(s)	58
BspACI	CCGC	5 cut(s)	5, 21, 83, 104, 419
BspANI	GGCC	2 cut(s)	171, 242
BspCNI	CTCAG	3 cut(s)	71, 107, 285
BspDI	ATCGAT	1 cut(s)	452
BspFNI	CGCG	2 cut(s)	21, 41
BspLI	GGNNCC	2 cut(s)	228, 229
BspPI	GGATC	1 cut(s)	461
BspQI	GCTCTTC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	270, 666
BsrI	ACTGG	2 cut(s)	387, 720
BssECI	CCNNGG	2 cut(s)	513, 573
BssMI	GATC	3 cut(s)	76, 453, 466
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	513, 573
Bst2UI	CCWGG	1 cut(s)	324
Bst6I	CTCTTC	2 cut(s)	307, 637
BstACI	GRCGYC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	358
BstDEI	CTNAG	5 cut(s)	58, 94, 293, 632, 696
BstFNI	CGCG	2 cut(s)	21, 41
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	79, 456, 469
BstMAI	GTCTC	2 cut(s)	92, 485
BstMBI	GATC	3 cut(s)	76, 453, 466
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 275, 303, 406, 633
BstNI	CCWGG	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	322
BstUI	CGCG	2 cut(s)	21, 41
BstV1I	GCAGC	5 cut(s)	59, 253, 287, 387, 541
Bsu15I	ATCGAT	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	696
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	171, 242
BsuTUI	ATCGAT	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	227, 367
ClaI	ATCGAT	1 cut(s)	452
CseI	GACGC	2 cut(s)	27, 109
CsiI	ACCWGGT	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	433, 581
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	5 cut(s)	58, 94, 293, 632, 696
DpnI	GATC	3 cut(s)	78, 455, 468
DpnII	GATC	3 cut(s)	76, 453, 466
DraI	TTTAAA	1 cut(s)	522
DraIII	CACNNNGTG	1 cut(s)	326
Eam1104I	CTCTTC	2 cut(s)	307, 637
EarI	CTCTTC	2 cut(s)	307, 637
Eco130I	CCWWGG	2 cut(s)	513, 573
Eco47I	GGWCC	2 cut(s)	227, 367
Eco81I	CCTNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	513, 573
ErhI	CCWWGG	2 cut(s)	513, 573
Esp3I	CGTCTC	1 cut(s)	92
FaeI	CATG	2 cut(s)	436, 584
FaiI	YATR	9 cut(s)	224, 258, 260, 434, 488, 582, 638, 682, 750
FalI	AAGNNNNNCTT	4 cut(s)	389, 421, 689, 721
FaqI	GGGAC	2 cut(s)	240, 495
FatI	CATG	2 cut(s)	432, 580
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	258
Fnu4HI	GCNGC	6 cut(s)	73, 104, 267, 276, 401, 555
Fsp4HI	GCNGC	6 cut(s)	73, 104, 267, 276, 401, 555
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	73, 104, 267, 276, 401, 555
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	2 cut(s)	171, 242
HapII	CCGG	2 cut(s)	125, 309
HgaI	GACGC	2 cut(s)	27, 109
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	436, 584
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	607
HindII	GTYRAC	1 cut(s)	607
HinfI	GANTC	4 cut(s)	24, 112, 188, 437
HpaI	GTTAAC	1 cut(s)	607
HpaII	CCGG	2 cut(s)	125, 309
HphI	GGTGA	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	6 cut(s)	17, 35, 50, 97, 141, 414
Hpy188III	TCNNGA	2 cut(s)	131, 195
Hpy8I	GTNNAC	1 cut(s)	607
Hpy99I	CGWCG	2 cut(s)	21, 54
HpyAV	CCTTC	1 cut(s)	781
HpyCH4V	TGCA	4 cut(s)	90, 275, 409, 774
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 275, 303, 406, 633
HpyF3I	CTNAG	5 cut(s)	58, 94, 293, 632, 696
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	436, 584
HspAI	GCGC	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	227
KspAI	GTTAAC	1 cut(s)	607
Kzo9I	GATC	3 cut(s)	76, 453, 466
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	541, 577, 733
Lsp1109I	GCAGC	5 cut(s)	59, 253, 287, 387, 541
LweI	GCATC	2 cut(s)	326, 418
MabI	ACCWGGT	1 cut(s)	322
MalI	GATC	3 cut(s)	78, 455, 468
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	3 cut(s)	76, 453, 466
MboII	GAAGA	3 cut(s)	324, 632, 654
MluCI	AATT	3 cut(s)	134, 352, 669
MmeI	TCCRAC	2 cut(s)	40, 73
MseI	TTAA	5 cut(s)	521, 606, 672, 707, 805
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	2 cut(s)	125, 309
MspR9I	CCNGG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	324
MvnI	CGCG	2 cut(s)	21, 41
MwoI	GCNNNNNNNGC	5 cut(s)	272, 275, 303, 406, 633
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	76, 453, 466
NlaIII	CATG	2 cut(s)	436, 584
NlaIV	GGNNCC	2 cut(s)	228, 229
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	458
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	24, 112, 188, 437
PkrI	GCNGC	6 cut(s)	74, 105, 268, 277, 402, 556
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	228, 229
PspPI	GGNCC	2 cut(s)	227, 367
PspPPI	RGGWCCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	307
SaqAI	TTAA	5 cut(s)	521, 606, 672, 707, 805
SatI	GCNGC	6 cut(s)	73, 104, 267, 276, 401, 555
Sau3AI	GATC	3 cut(s)	76, 453, 466
Sau96I	GGNCC	2 cut(s)	227, 367
ScrFI	CCNGG	1 cut(s)	324
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	326, 418
SfuI	TTCGAA	1 cut(s)	358
SinI	GGWCC	2 cut(s)	227, 367
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	134, 352, 669
SsiI	CCGC	5 cut(s)	5, 21, 83, 104, 419
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	2 cut(s)	513, 573
TaqI	TCGA	2 cut(s)	358, 452
TasI	AATT	3 cut(s)	134, 352, 669
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	4 cut(s)	24, 112, 188, 437
Tru1I	TTAA	5 cut(s)	521, 606, 672, 707, 805
Tru9I	TTAA	5 cut(s)	521, 606, 672, 707, 805
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	5 cut(s)	72, 266, 275, 400, 554
TspDTI	ATGAA	1 cut(s)	201
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	227, 367
XapI	RAATTY	2 cut(s)	134, 352
XceI	RCATGY	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.