Rh2BG672500

Ribosome-recycling factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007948
Physical Location & Seq
Forward (+)
88377301 .. 88378353
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG672500.1

Sequence Viewer

Length: 537 bp
ATGGCGATCTTTCTCCGACGCGGATTCTCAATCCGAAACGCCCTTCTCCGACGAAGCTCAGCTCTGTACGGCTGCGATCTCCCGCTCTGCAACTCAGAGACGCCTCAAAGGATTCTATCTCCTCCGGCTCTTGAATTTCTGAAAGAAAGTCGCAGAGGCTTCGCCAAAGGCCGTAAATCAAAAGATGAATCGTCTGGAACTACAATGGAGGTTTTACCAGATATGGGACCCACCATCAAGGCCAATGCGACCTCACATATGGAGGCTGCAATTGCAGCATTGTCAGTAGAACTGAGCAAACTACGCACCGGAAGAGCATCACCAGGAATGCTGGACCACATTATTGTGGAAACCAGTGGGTTGAAGCTGCCCTTGCATCAGATAGCGGTTGTTTCAGTCGTGGATTCAAAAACGTTATCGATCAATCCGTTTGATCCAAATGCCTTGAAAAATATAGAGACTGCCATTGTTGAATCTCCCTTGGGTTTAAATCCTAAAACCGATGGGGAGCGATTGATTGCTGCTATTCCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRF

Protein Analysis

178

Amino Acids

19.16

Weight (kDa)

9.26

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRF PF01765 96 - 178 4.8e-26 Ribosome recycling factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 85
AccII CGCG 1 cut(s) 21
AciI CCGC 3 cut(s) 21, 83, 386
AclI AACGTT 1 cut(s) 413
AclWI GGATC 1 cut(s) 428
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 5 cut(s) 134, 364, 408, 448, 473
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 57, 62, 367
AluI AGCT 3 cut(s) 57, 62, 367
Alw26I GTCTC 2 cut(s) 92, 452
AlwI GGATC 1 cut(s) 428
AoxI GGCC 2 cut(s) 169, 240
ApeKI GCWGC 5 cut(s) 72, 266, 275, 367, 521
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 227, 334
AsuHPI GGTGA 1 cut(s) 312
AvaII GGWCC 2 cut(s) 227, 334
BbvI GCAGC 5 cut(s) 59, 253, 287, 354, 508
BccI CCATC 2 cut(s) 242, 497
BceAI ACGGC 2 cut(s) 85, 156
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 1 cut(s) 324
BcoDI GTCTC 2 cut(s) 92, 452
BisI GCNGC 5 cut(s) 73, 267, 276, 368, 522
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 5 cut(s) 74, 268, 277, 369, 523
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 2 cut(s) 227, 334
BmgT120I GGNCC 2 cut(s) 227, 334
BmiI GGNNCC 2 cut(s) 228, 229
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 326, 385
Bpu1102I GCTNAGC 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 324
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 3 cut(s) 72, 108, 284
BseNI ACTGG 1 cut(s) 354
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 5 cut(s) 59, 253, 287, 354, 508
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 171, 242
BshVI ATCGAT 1 cut(s) 419
BsiSI CCGG 2 cut(s) 125, 309
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 2 cut(s) 92, 452
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 2 cut(s) 171, 242
Bsp143I GATC 4 cut(s) 6, 76, 420, 433
Bsp1720I GCTNAGC 1 cut(s) 58
BspACI CCGC 3 cut(s) 21, 83, 386
BspANI GGCC 2 cut(s) 171, 242
BspCNI CTCAG 3 cut(s) 71, 107, 285
BspDI ATCGAT 1 cut(s) 419
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 228, 229
BspPI GGATC 1 cut(s) 428
BspQI GCTCTTC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 85
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 4 cut(s) 6, 76, 420, 433
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 307
BstACI GRCGYC 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 58, 94, 293
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 4 cut(s) 9, 79, 423, 436
BstMAI GTCTC 2 cut(s) 92, 452
BstMBI GATC 4 cut(s) 6, 76, 420, 433
BstMWI GCNNNNNNNGC 4 cut(s) 272, 275, 303, 373
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 5 cut(s) 59, 253, 287, 354, 508
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 2 cut(s) 171, 242
BsuTUI ATCGAT 1 cut(s) 419
BtsIMutI CAGTG 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 227, 334
ClaI ATCGAT 1 cut(s) 419
CseI GACGC 2 cut(s) 27, 109
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 9 cut(s) 57, 62, 72, 128, 159, 171, 242, 266, 367
CviKI_1 RGCY 9 cut(s) 57, 62, 72, 128, 159, 171, 242, 266, 367
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 58, 94, 293
DpnI GATC 4 cut(s) 8, 78, 422, 435
DpnII GATC 4 cut(s) 6, 76, 420, 433
DraI TTTAAA 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 227, 334
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 4 cut(s) 224, 258, 260, 455
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 1 cut(s) 240
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 5 cut(s) 73, 267, 276, 368, 522
Fsp4HI GCNGC 5 cut(s) 73, 267, 276, 368, 522
GluI GCNGC 5 cut(s) 73, 267, 276, 368, 522
HaeIII GGCC 2 cut(s) 171, 242
HapII CCGG 2 cut(s) 125, 309
HgaI GACGC 2 cut(s) 27, 109
Hin1I GRCGYC 1 cut(s) 101
HinfI GANTC 5 cut(s) 24, 112, 188, 404, 473
HpaII CCGG 2 cut(s) 125, 309
HphI GGTGA 1 cut(s) 312
Hpy188I TCNGA 6 cut(s) 17, 35, 50, 97, 141, 381
Hpy188III TCNNGA 2 cut(s) 131, 195
Hpy99I CGWCG 2 cut(s) 21, 54
HpyAV CCTTC 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 90, 269, 275, 376
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 275, 303, 373
HpyF3I CTNAG 3 cut(s) 58, 94, 293
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 101
KflI GGGWCCC 1 cut(s) 227
Kzo9I GATC 4 cut(s) 6, 76, 420, 433
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 508
LpnPI CCDG 8 cut(s) 138, 180, 231, 309, 317, 322, 336, 367
Lsp1109I GCAGC 5 cut(s) 59, 253, 287, 354, 508
LweI GCATC 2 cut(s) 326, 385
MaeII ACGT 1 cut(s) 413
MalI GATC 4 cut(s) 8, 78, 422, 435
MbiI CCGCTC 1 cut(s) 85
MboI GATC 4 cut(s) 6, 76, 420, 433
MboII GAAGA 1 cut(s) 324
MfeI CAATTG 1 cut(s) 270
MluCI AATT 2 cut(s) 134, 270
MmeI TCCRAC 2 cut(s) 40, 73
MnlI CCTC 6 cut(s) 114, 132, 149, 202, 256, 262
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 2 cut(s) 125, 309
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 333
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 272, 275, 303, 373
NdeI CATATG 1 cut(s) 258
NdeII GATC 4 cut(s) 6, 76, 420, 433
NlaIV GGNNCC 2 cut(s) 228, 229
PciSI GCTCTTC 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PctI GAATGC 1 cut(s) 333
PfeI GAWTC 5 cut(s) 24, 112, 188, 404, 473
PkrI GCNGC 5 cut(s) 74, 268, 277, 369, 523
PpuMI RGGWCCY 1 cut(s) 227
Psp1406I AACGTT 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 228, 229
PspPI GGNCC 2 cut(s) 227, 334
PspPPI RGGWCCY 1 cut(s) 227
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 5 cut(s) 73, 267, 276, 368, 522
Sau3AI GATC 4 cut(s) 6, 76, 420, 433
Sau96I GGNCC 2 cut(s) 227, 334
ScrFI CCNGG 1 cut(s) 324
SetI ASST 6 cut(s) 59, 64, 213, 254, 369, 416
SfaNI GCATC 2 cut(s) 326, 385
SinI GGWCC 2 cut(s) 227, 334
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 2 cut(s) 134, 270
SsiI CCGC 3 cut(s) 21, 83, 386
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 480
TaiI ACGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 419
TasI AATT 2 cut(s) 134, 270
TfiI GAWTC 5 cut(s) 24, 112, 188, 404, 473
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 1 cut(s) 361
TseI GCWGC 5 cut(s) 72, 266, 275, 367, 521
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 2 cut(s) 417, 522
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 2 cut(s) 227, 334
XapI RAATTY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.