Rmu_sc0010382.1_g000001

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010382.1
OG0018148
Physical Location & Seq
Reverse (-)
2490 .. 6037
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010382.1_g000001.1.cds

Sequence Viewer

Length: 456 bp
atgaactttcagaaacatcatccgaaagccactagtaaaaagaagcgtccgtcgactaaatggaaatgccctccgcgtggtagactgaaaatcaacatcgatggtgcttatagagctgatagtgatgttggaggtattggggtggtagtccatgtggaactgtataccatggtctgtgggatggatcaccaaagctggtggccagtctcaggtagagtaacattcgccaatccaaacgctccagtttatccacgcttagcacaagggaaaatgtggaatgagatgactgtaacatggacaagtggatatgctctaggggaagcaacaccttttgttaaatggggtcagaaaggaggagagcttgtgagatccccagccgggactttgaccttcgatagcaacaacatgtgtgtgggcggcaaagagtcggaactcatatacccaagagcaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

151

Amino Acids

16.76

Weight (kDa)

9.68

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 53, 82, 164
AccII CGCG 1 cut(s) 76
AciI CCGC 2 cut(s) 74, 417
AclWI GGATC 2 cut(s) 192, 363
AcoI YGGCCR 1 cut(s) 200
AfiI CCNNNNNNNGG 3 cut(s) 77, 209, 378
AflIII ACRYGT 1 cut(s) 405
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 3 cut(s) 116, 195, 361
AluI AGCT 3 cut(s) 116, 195, 361
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 192, 363
AoxI GGCC 1 cut(s) 200
AsuC2I CCSGG 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 179
BalI TGGCCA 1 cut(s) 202
BccI CCATC 2 cut(s) 95, 175
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 211
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 2 cut(s) 33, 314
BisI GCNGC 1 cut(s) 418
BlpI GCTNAGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 379
BpmI CTGGAG 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 209, 378
Bse1I ACTGG 2 cut(s) 203, 242
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 19, 186
BseLI CCNNNNNNNGG 3 cut(s) 77, 209, 378
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 203, 242
BseRI GAGGAG 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 99
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 3 cut(s) 77, 209, 378
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 202
Bsp143I GATC 2 cut(s) 184, 368
Bsp1720I GCTNAGC 1 cut(s) 256
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 74, 417
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 221
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 76
BspPI GGATC 2 cut(s) 192, 363
BsrI ACTGG 2 cut(s) 203, 242
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 184, 368
BssNAI GTATAC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 162, 289
BstDEI CTNAG 2 cut(s) 208, 256
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 19, 186
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 2 cut(s) 187, 371
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 184, 368
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 377
BstUI CGCG 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BstZ17I GTATAC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 202
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 2 cut(s) 19, 186
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 35
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviAII CATG 4 cut(s) 152, 169, 294, 406
CviJI RGCY 6 cut(s) 29, 116, 195, 202, 361, 377
CviKI_1 RGCY 6 cut(s) 29, 116, 195, 202, 361, 377
DdeI CTNAG 2 cut(s) 208, 256
DpnI GATC 2 cut(s) 186, 370
DpnII GATC 2 cut(s) 184, 368
EaeI YGGCCR 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 4 cut(s) 155, 172, 297, 409
FaiI YATR 9 cut(s) 111, 153, 165, 170, 295, 309, 407, 437, 439
FalI AAGNNNNNCTT 1 cut(s) 436
FaqI GGGAC 1 cut(s) 394
FatI CATG 4 cut(s) 151, 168, 293, 405
FblI GTMKAC 3 cut(s) 53, 82, 164
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 2 cut(s) 6, 193
Fsp4HI GCNGC 1 cut(s) 418
FspBI CTAG 2 cut(s) 33, 314
GluI GCNGC 1 cut(s) 418
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 35
Hin1II CATG 4 cut(s) 155, 172, 297, 409
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 1 cut(s) 425
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 54, 83, 165
Hpy188I TCNGA 4 cut(s) 12, 24, 348, 430
Hpy8I GTNNAC 3 cut(s) 54, 83, 165
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 162, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 208, 256
Hsp92II CATG 4 cut(s) 155, 172, 297, 409
Kzo9I GATC 2 cut(s) 184, 368
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 181, 195, 216, 255, 387, 391
MaeI CTAG 2 cut(s) 33, 314
MaeIII GTNAC 2 cut(s) 217, 289
MalI GATC 2 cut(s) 186, 370
MboI GATC 2 cut(s) 184, 368
MflI RGATCY 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 202
MluNI TGGCCA 1 cut(s) 202
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 109, 408
MnlI CCTC 3 cut(s) 81, 125, 347
Mox20I TGGCCA 1 cut(s) 202
MscI TGGCCA 1 cut(s) 202
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 410
Msp20I TGGCCA 1 cut(s) 202
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 379
NcoI CCATGG 1 cut(s) 168
NdeII GATC 2 cut(s) 184, 368
NlaIII CATG 4 cut(s) 155, 172, 297, 409
NspI RCATGY 1 cut(s) 409
PciI ACATGT 1 cut(s) 405
PkrI GCNGC 1 cut(s) 419
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PscI ACATGT 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 373
PsuI RGATCY 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 2 cut(s) 184, 368
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 379
SetI ASST 7 cut(s) 118, 136, 197, 214, 331, 363, 392
SmiMI CAYNNNNRTG 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 32
SsiI CCGC 2 cut(s) 74, 417
SspMI CTAG 2 cut(s) 33, 314
StyD4I CCNGG 1 cut(s) 377
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 162, 289
TaqI TCGA 3 cut(s) 53, 99, 393
TauI GCSGC 1 cut(s) 420
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 39
XceI RCATGY 1 cut(s) 409
XmiI GTMKAC 3 cut(s) 53, 82, 164
XspI CTAG 2 cut(s) 33, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.