Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018148

Physical Location & Seq

Genomic Coordinates Forward (+)

8142456 .. 8143528

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0049200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGCATGTGATACAAGGAGTCTATGGGATTGGCGTGGTCTTTAGGGATGAACACAGAGGTTTGAAGGGAGCCATAGCTATTCCTCAAGTTGAAAATCTATCACTAAGATCTATTGAGGCTCTTGCACTACTTCATGGACTTCAGTTTGCTATTCATGTTGGATTCAAAAACCTGGAGATTAAAGGCAAGGTCAAAGATGTAACTAGAGTTCAAACACTTCTCTTCAGCGCAACCTTACCCTCTTGGGGGCAAAATATTTCCAGAAGGTTCCTTAAATCAGATAAGGAAACTACAGATCTGGTTGGTAATGAAAAGATGAAGGCCAGCATCAATGTTAGGCATATTGTTCTTCCCTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

9.75

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	10 - 70	4e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018148)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0324971 RchiOBHm_Chr5g0055221
rosa_multiflora	Rmu_sc0010382.1_g000001
rosa_roxburghii	Rroxscaffold_4G00324970 Rroxscaffold_6G00402920
rosa_rugosa	Rorug01G0049200 Rorug02G0488600
rosa_samantha	Rh1CG066600 Rh1DG034800 Rh1DG071300 Rh2BG568300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	128, 211
AfiI	CCNNNNNNNGG	2 cut(s)	248, 249
AgsI	TTSAA	4 cut(s)	67, 95, 169, 215
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	207
BfmI	CTRYAG	1 cut(s)	294
BglII	AGATCT	2 cut(s)	110, 298
Bme1390I	CCNGG	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	73, 272
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 249
BseBI	CCWGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	248, 249
BshFI	GGCC	1 cut(s)	326
BslI	CCNNNNNNNGG	2 cut(s)	248, 249
BsnI	GGCC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	110, 298
BspANI	GGCC	1 cut(s)	326
BspLI	GGNNCC	2 cut(s)	73, 272
BssMI	GATC	2 cut(s)	110, 298
Bst2UI	CCWGG	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	2 cut(s)	113, 301
BstMBI	GATC	2 cut(s)	110, 298
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	294
BstX2I	RGATCY	2 cut(s)	110, 298
BstYI	RGATCY	2 cut(s)	110, 298
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	233
CviAII	CATG	3 cut(s)	8, 137, 158
CviJI	RGCY	4 cut(s)	74, 80, 122, 326
CviKI_1	RGCY	4 cut(s)	74, 80, 122, 326
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	2 cut(s)	112, 300
DpnII	GATC	2 cut(s)	110, 298
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	128, 211
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	11, 140, 161
FaiI	YATR	7 cut(s)	9, 27, 77, 138, 159, 345, 360
FatI	CATG	3 cut(s)	7, 136, 157
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	207
GlaI	GCGC	1 cut(s)	232
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	11, 140, 161
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	21, 165
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	264
HpyAV	CCTTC	3 cut(s)	61, 261, 316
HpyCH4V	TGCA	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	11, 140, 161
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	110, 298
LmnI	GCTCC	2 cut(s)	4, 71
LpnPI	CCDG	5 cut(s)	161, 188, 277, 287, 340
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	112, 300
MboI	GATC	2 cut(s)	110, 298
MboII	GAAGA	2 cut(s)	217, 344
MflI	RGATCY	2 cut(s)	110, 298
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	4 cut(s)	53, 96, 112, 253
MseI	TTAA	3 cut(s)	183, 276, 364
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
NdeII	GATC	2 cut(s)	110, 298
NlaIII	CATG	3 cut(s)	11, 140, 161
NlaIV	GGNNCC	2 cut(s)	73, 272
NspI	RCATGY	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	73, 272
PsrI	GAACNNNNNNTAC	2 cut(s)	195, 227
PsuI	RGATCY	2 cut(s)	110, 298
SaqAI	TTAA	3 cut(s)	183, 276, 364
Sau3AI	GATC	2 cut(s)	110, 298
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	6 cut(s)	64, 82, 177, 195, 239, 272
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	183, 276, 364
Tru9I	TTAA	3 cut(s)	183, 276, 364
TspDTI	ATGAA	5 cut(s)	66, 125, 146, 327, 335
XceI	RCATGY	1 cut(s)	11
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.