Rh1DG034800

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018148
Physical Location & Seq
Forward (+)
5154209 .. 5201826
47618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG034800.1

Sequence Viewer

Length: 447 bp
ATGCTACAAAGATCTCTGAGTAACAGCCAAAGCTGGTGGCCAGTCTCAGGTAGAGAAACATTCACCAATCCAAATGCTCCAGTTTATCCACGCTTAGCACAAGGGAAAATGTGGAATGAGATGACTGTAACATGGACAAGTGGATATGCTCTAGGGGAAGCAACACCTTTTGTTGAATGGGGTCAGAAAGGAGGAGAGCTTGTGAGATCCCCAGCCGGGACTTTGACCTTCGATAGCAACAGCATGTGTGATGTGAAGTGCAAAAGGTTGTTCCACCTTGGTATGCTGAGAGGAGAAACTCAGAAGCCTCCCAAAGGAGTTAAGACCCCTGCATCCTCAGCAAGCTTCCCCCACGGACAAAAGACTATGAGGGATACCCTCCAACATTCACGAGCAGGCGTAGGAGCATCCCCAAACCAAGAGGAGAGGATACCGGACCGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

9.69

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 38
AfiI CCNNNNNNNGG 3 cut(s) 47, 216, 314
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 3 cut(s) 33, 199, 345
AluI AGCT 3 cut(s) 33, 199, 345
Alw26I GTCTC 1 cut(s) 49
AlwI GGATC 1 cut(s) 201
AoxI GGCC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 436
BalI TGGCCA 1 cut(s) 40
BauI CACGAG 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 337
BciVI GTATCC 2 cut(s) 367, 423
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 152
BfuI GTATCC 2 cut(s) 367, 423
BglII AGATCT 1 cut(s) 11
BlpI GCTNAGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 341, 416
BpmI CTGGAG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 337
Bpu1102I GCTNAGC 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 277, 352
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 216, 314
Bse1I ACTGG 2 cut(s) 41, 80
BseDI CCNNGG 2 cut(s) 277, 352
BseGI GGATG 2 cut(s) 332, 407
BseLI CCNNNNNNNGG 3 cut(s) 47, 216, 314
BseMII CTCAG 5 cut(s) 8, 60, 278, 314, 351
BseNI ACTGG 2 cut(s) 41, 80
BseRI GAGGAG 3 cut(s) 207, 306, 437
BseYI CCCAGC 1 cut(s) 211
BshFI GGCC 1 cut(s) 40
BsiSI CCGG 2 cut(s) 216, 434
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 47, 216, 314
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 11, 206
Bsp1720I GCTNAGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 5 cut(s) 9, 59, 279, 313, 350
BspPI GGATC 1 cut(s) 201
BsrI ACTGG 2 cut(s) 41, 80
BssECI CCNNGG 2 cut(s) 277, 352
BssMI GATC 2 cut(s) 11, 206
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 343, 397
BstDEI CTNAG 6 cut(s) 17, 46, 94, 287, 300, 337
BstDSI CCRYGG 1 cut(s) 352
BstENI CCTNNNNNAGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 332, 407
BstKTI GATC 2 cut(s) 14, 209
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 11, 206
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 215
BstX2I RGATCY 2 cut(s) 11, 206
BstYI RGATCY 2 cut(s) 11, 206
BsuI GTATCC 2 cut(s) 367, 423
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 2 cut(s) 332, 407
Cac8I GCNNGC 2 cut(s) 343, 397
Cfr13I GGNCC 1 cut(s) 436
CpoI CGGWCCG 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 17, 52
CspI CGGWCCG 1 cut(s) 436
CviAII CATG 2 cut(s) 132, 244
CviJI RGCY 8 cut(s) 27, 33, 40, 199, 215, 307, 345, 443
CviKI_1 RGCY 8 cut(s) 27, 33, 40, 199, 215, 307, 345, 443
DdeI CTNAG 6 cut(s) 17, 46, 94, 287, 300, 337
DpnI GATC 2 cut(s) 13, 208
DpnII GATC 2 cut(s) 11, 206
EaeI YGGCCR 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 436
EcoNI CCTNNNNNAGG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 135, 247
FaiI YATR 5 cut(s) 133, 147, 245, 284, 368
FaqI GGGAC 1 cut(s) 232
FatI CATG 2 cut(s) 131, 243
FokI GGATG 2 cut(s) 319, 394
FspBI CTAG 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 40
HapII CCGG 2 cut(s) 216, 434
Hin1II CATG 2 cut(s) 135, 247
HindIII AAGCTT 1 cut(s) 343
HpaII CCGG 2 cut(s) 216, 434
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 18, 186, 303
Hpy188III TCNNGA 1 cut(s) 390
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 261, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 6 cut(s) 17, 46, 94, 287, 300, 337
Hsp92II CATG 2 cut(s) 135, 247
Kzo9I GATC 2 cut(s) 11, 206
LmnI GCTCC 2 cut(s) 82, 404
LpnPI CCDG 8 cut(s) 19, 33, 54, 93, 225, 229, 342, 381
LweI GCATC 2 cut(s) 341, 416
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 20, 127
MalI GATC 2 cut(s) 13, 208
MboI GATC 2 cut(s) 11, 206
MflI RGATCY 2 cut(s) 11, 206
MlsI TGGCCA 1 cut(s) 40
MluNI TGGCCA 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 8 cut(s) 185, 284, 318, 346, 363, 389, 415, 420
Mox20I TGGCCA 1 cut(s) 40
MscI TGGCCA 1 cut(s) 40
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 40
MspI CCGG 2 cut(s) 216, 434
MspR9I CCNGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 338
NciI CCSGG 1 cut(s) 217
NdeII GATC 2 cut(s) 11, 206
NlaIII CATG 2 cut(s) 135, 247
NspI RCATGY 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 436
PsuI RGATCY 2 cut(s) 11, 206
Rsr2I CGGWCCG 1 cut(s) 436
RsrII CGGWCCG 1 cut(s) 436
SaqAI TTAA 1 cut(s) 321
Sau3AI GATC 2 cut(s) 11, 206
Sau96I GGNCC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 217
SetI ASST 8 cut(s) 35, 52, 169, 201, 230, 269, 279, 347
SfaNI GCATC 2 cut(s) 341, 416
SinI GGWCC 1 cut(s) 436
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 231
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 436
XagI CCTNNNNNAGG 1 cut(s) 312
XceI RCATGY 1 cut(s) 247
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.