Rh1DG071300

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018148
Physical Location & Seq
Forward (+)
12833321 .. 12868476
35156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG071300.1

Sequence Viewer

Length: 792 bp
ATGATTTTGACAGGGCTCGTGGTCCTCTCCTTTGATGTGCCTGATTCCATTGCTACTCAAAGAGGTAGCAGTGTAGGTGTTGATAGGGTTTTGAACATTACAAAACAAGATGGAGTATCTACCAAGAAAATGCAGACACTGCACCAGGCGAGATGGTTTGGATCAGATCAGTTCAGGTTTCAGATTTTGGGCCCGCAGTTTGATCCAATCCCCTTACTACAACTGCTGATGGAGCTACTAAAGATGACTCTACAGTTATTAATTTGGTTCCCACGAAACCGATTGAAAGCTAGACGATCGGAACCAGCGGTCTCTGAAATAAGCCAAAGCTGGTGGCCACTCTCAGGTAGAGTAACATTCGCCAATCCAAATGCTCTAGTTTATCCATGCTTAGCACAAGGGAAAATGTGGAATGAGATGACTGTAACATGGACAAGTGGATATGCTCTAGGGGAAGCAACACCTTTTGTTGAATGGGGTCAGAAAGGAGGAGAGCTTGTGAGATCCCCAACCGGGACTTTGACCTTCGATAGCAACAGCATGTGTGGCAAAAGATCAGAAGAAGCTCTCACGGACCTAATTCAGACCCGAGCCCTTCACCATCAAGGACTACTACGAGGTAATGGAACTACAGCTGCCATCCTTTTTTTGACAATTTTGATCCCTACTGCTGCTAATGTCCATCAAATACCATCTTGGGCTCCAGTTGTAGATGCTAACGCTAAGATCAAATCAAAAATGCAATCTCAGCAAGGTCTTCATCCCCAACAAAAGCAATCGCAGAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

263

Amino Acids

29.21

Weight (kDa)

9.65

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 194, 308
AclWI GGATC 4 cut(s) 169, 197, 498, 655
AcoI YGGCCR 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 344, 513
AgsI TTSAA 3 cut(s) 94, 286, 473
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 6 cut(s) 235, 290, 330, 496, 566, 635
AluI AGCT 6 cut(s) 235, 290, 330, 496, 566, 635
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 4 cut(s) 169, 197, 498, 655
AlwNI CAGNNNCTG 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 2 cut(s) 190, 335
ApaI GGGCCC 1 cut(s) 194
ApeKI GCWGC 2 cut(s) 635, 671
AseI ATTAAT 1 cut(s) 260
AspS9I GGNCC 4 cut(s) 22, 190, 191, 574
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 1 cut(s) 590
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 2 cut(s) 22, 574
BaeGI GKGCMC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 337
BanII GRGCYC 4 cut(s) 18, 194, 595, 703
BauI CACGAG 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 749
BbvI GCAGC 2 cut(s) 622, 658
BccI CCATC 7 cut(s) 104, 147, 223, 609, 647, 690, 700
BciT130I CCWGG 1 cut(s) 146
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 316
BfaI CTAG 3 cut(s) 291, 377, 449
BfmI CTRYAG 2 cut(s) 251, 630
BisI GCNGC 2 cut(s) 636, 672
BlpI GCTNAGC 1 cut(s) 391
BlsI GCNGC 2 cut(s) 637, 673
Bme1390I CCNGG 2 cut(s) 146, 514
Bme18I GGWCC 2 cut(s) 22, 574
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 4 cut(s) 22, 190, 191, 574
BmiI GGNNCC 4 cut(s) 192, 269, 303, 702
BmrFI CCNGG 2 cut(s) 146, 514
BmsI GCATC 1 cut(s) 703
BpiI GAAGAC 1 cut(s) 749
BpmI CTGGAG 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 514
BsaI GGTCTC 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 513
Bse1I ACTGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 639, 760
BseLI CCNNNNNNNGG 2 cut(s) 344, 513
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 357, 761
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 194
BseXI GCAGC 2 cut(s) 622, 658
BsgI GTGCAG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 2 cut(s) 192, 337
BsiEI CGRYCG 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 2 cut(s) 344, 513
BsmAI GTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 2 cut(s) 192, 337
Bso31I GGTCTC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 588
Bsp120I GGGCCC 1 cut(s) 190
Bsp1286I GDGCHC 4 cut(s) 18, 194, 595, 703
Bsp143I GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
Bsp1720I GCTNAGC 1 cut(s) 391
BspACI CCGC 2 cut(s) 194, 308
BspANI GGCC 2 cut(s) 192, 337
BspCNI CTCAG 2 cut(s) 356, 760
BspLI GGNNCC 4 cut(s) 192, 269, 303, 702
BspPI GGATC 4 cut(s) 169, 197, 498, 655
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 704
BssMI GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 255, 424
BstAPI GCANNNNNTGC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 4 cut(s) 343, 391, 723, 747
BstF5I GGATG 2 cut(s) 639, 760
BstKTI GATC 8 cut(s) 164, 169, 205, 299, 506, 557, 663, 729
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 4 cut(s) 139, 232, 546, 748
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 2 cut(s) 144, 512
BstSFI CTRYAG 2 cut(s) 251, 630
BstSLI GKGCMC 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 622, 658
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BsuRI GGCC 2 cut(s) 192, 337
BtsCI GGATG 2 cut(s) 639, 760
BtsI GCAGTG 2 cut(s) 76, 137
BtsIMutI CAGTG 2 cut(s) 76, 137
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 139
Cfr13I GGNCC 4 cut(s) 22, 190, 191, 574
CspCI CAANNNNNGTGG 2 cut(s) 314, 349
CviAII CATG 3 cut(s) 387, 429, 541
DdeI CTNAG 4 cut(s) 343, 391, 723, 747
DpnI GATC 8 cut(s) 163, 168, 204, 298, 505, 556, 662, 728
DpnII GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
EaeI YGGCCR 1 cut(s) 335
Eco24I GRGCYC 4 cut(s) 18, 194, 595, 703
Eco31I GGTCTC 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 22, 574
Eco88I CYCGRG 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 144
EcoT38I GRGCYC 4 cut(s) 18, 194, 595, 703
FaeI CATG 3 cut(s) 390, 432, 544
FaiI YATR 4 cut(s) 388, 430, 444, 542
FaqI GGGAC 1 cut(s) 529
FatI CATG 3 cut(s) 386, 428, 540
FauI CCCGC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 636, 672
FokI GGATG 2 cut(s) 626, 747
FriOI GRGCYC 4 cut(s) 18, 194, 595, 703
Fsp4HI GCNGC 2 cut(s) 636, 672
FspBI CTAG 3 cut(s) 291, 377, 449
GluI GCNGC 2 cut(s) 636, 672
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 2 cut(s) 192, 337
HapII CCGG 1 cut(s) 513
Hin1II CATG 3 cut(s) 390, 432, 544
HinfI GANTC 2 cut(s) 44, 247
HpaII CCGG 1 cut(s) 513
HphI GGTGA 1 cut(s) 590
Hpy188I TCNGA 7 cut(s) 166, 183, 301, 316, 483, 559, 585
HpyAV CCTTC 2 cut(s) 535, 605
HpyCH4III ACNGT 2 cut(s) 255, 424
HpyCH4V TGCA 3 cut(s) 133, 142, 742
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 232, 546, 748
HpyF3I CTNAG 4 cut(s) 343, 391, 723, 747
Hsp92II CATG 3 cut(s) 390, 432, 544
Kzo9I GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
LmnI GCTCC 2 cut(s) 232, 706
LpnPI CCDG 9 cut(s) 54, 131, 158, 160, 316, 318, 330, 526, 717
Lsp1109I GCAGC 2 cut(s) 622, 658
LweI GCATC 1 cut(s) 703
MaeI CTAG 3 cut(s) 291, 377, 449
MaeIII GTNAC 2 cut(s) 352, 424
MalI GATC 8 cut(s) 163, 168, 204, 298, 505, 556, 662, 728
MboI GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
MboII GAAGA 2 cut(s) 572, 749
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 4 cut(s) 18, 194, 595, 703
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 4 cut(s) 261, 579, 654, 787
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 1 cut(s) 241
MnlI CCTC 4 cut(s) 35, 56, 482, 611
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 2 cut(s) 260, 790
Msp20I TGGCCA 1 cut(s) 337
MspA1I CMGCKG 2 cut(s) 308, 635
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 146, 514
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 4 cut(s) 139, 232, 546, 748
NciI CCSGG 1 cut(s) 514
NdeII GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
NlaIII CATG 3 cut(s) 390, 432, 544
NlaIV GGNNCC 4 cut(s) 192, 269, 303, 702
NspI RCATGY 1 cut(s) 544
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 637, 673
Ple19I CGATCG 1 cut(s) 299
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 4 cut(s) 192, 269, 303, 702
PspOMI GGGCCC 1 cut(s) 190
PspPI GGNCC 4 cut(s) 22, 190, 191, 574
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 503
PvuI CGATCG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 635
SaqAI TTAA 2 cut(s) 260, 790
SatI GCNGC 2 cut(s) 636, 672
Sau3AI GATC 8 cut(s) 161, 166, 202, 296, 503, 554, 660, 726
Sau96I GGNCC 4 cut(s) 22, 190, 191, 574
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 146, 514
SduI GDGCHC 4 cut(s) 18, 194, 595, 703
SfaNI GCATC 1 cut(s) 703
SfcI CTRYAG 2 cut(s) 251, 630
SinI GGWCC 2 cut(s) 22, 574
Sse9I AATT 4 cut(s) 261, 579, 654, 787
SsiI CCGC 2 cut(s) 194, 308
SspMI CTAG 3 cut(s) 291, 377, 449
StyD4I CCNGG 2 cut(s) 144, 512
TaaI ACNGT 2 cut(s) 255, 424
TaqI TCGA 1 cut(s) 528
TasI AATT 4 cut(s) 261, 579, 654, 787
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 260, 790
Tru9I TTAA 2 cut(s) 260, 790
TscAI CASTG 2 cut(s) 76, 144
TseI GCWGC 2 cut(s) 635, 671
TspDTI ATGAA 1 cut(s) 749
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 2 cut(s) 76, 144
VpaK11BI GGWCC 2 cut(s) 22, 574
VspI ATTAAT 1 cut(s) 260
XceI RCATGY 1 cut(s) 544
XspI CTAG 3 cut(s) 291, 377, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.