Rorug02G0488600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018148
Physical Location & Seq
Forward (+)
61825735 .. 61826839
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0488600.1

Sequence Viewer

Length: 1059 bp
ATGAGAAAAGCACACTTATACTATATAAAATATCCCAGTATTTTTGGGTTGGGCTATAGCCCAAACAGCTTTTCATGTAGTCCTGCCACTGGTCAACAACCCCATGTGAAAGATGCCGTCACAAAACTCAGCGAGTCCAAGACTCAGCTTGCGGGGTTAGTCGTCGACATGTTTTGTGCCGTTATGATCGTCGTGGCCAACCAAATTTGGGTTCCTAGCTACGTGTTCTTCACCTCTAGCGCCGGCATGCTCGGGCTAGTATTCCACTTCCAAGCGCAGCGCGATCAATATAGCAAGGACTGCATCGAATTTAAAGACTCAGACGCTGAGTTGCTCATCCCGAGTTTTGTCAATCTCTTGCCAGCTGCTGTCTTACCTGACATGCTATTAGTGAACGAGGTAACAGAATCAATCCTCAACATTATCAAAAGGTTTAGAGGTACCAAGGGTATTTTGGTAGATACGTTCACAAACATAGAATCACATGCCTTTCATGCTCTTTTATCTGATGCCGAGATCCCTCCCTCGTTGGATTCGGAGGAGGCCAAGCAGAAGTATGATATCTTGAAATGGCTTGATGATCAGCCTCCATTGTCTGTAGTGTTCTTGTGTTTTAGAAGTATGGGAAGCTTTAGCGAGGACCAGGTGAAAGAGATCGCCCACGCCCTAGAGCACGCGGGCCATCAGTTCTTGTGGTCCTTATGTCGGCCTTCACCCACTGGAAGAATTTCTTTTCCAAGTGACTACAATGACCACACTGGAGTCTTGCCCGAATGGTTCCTCGATCGAATAGTTCGGATTGGAAAGGTCATAGGCTGGGCCCCGCAAGTTGCCATCTTGGCTCACCCATCTGTGAGAGGATTTGTATCCCATTGTGGGTGGAATTCCACTCTTGAAAGTCTTTGGCATGGTGTGCCCATTTCCACATGGCCATTGTATGCAGAGCAACAGCTTAACGAGTTTCAGCTGGTGAAGGAATTGGAATTGATGGTGGAAATTGATATGAGCTACAGGAGCTATAATCCAGTTCTTGTGAGCGTGAAGGAGATAGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

352

Amino Acids

39.7

Weight (kDa)

5.37

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 200 - 337 4.1e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 440
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 165
AccII CGCG 2 cut(s) 282, 677
AciI CCGC 3 cut(s) 152, 677, 824
AclWI GGATC 1 cut(s) 511
AcoI YGGCCR 2 cut(s) 195, 929
AcsI RAATTY 4 cut(s) 204, 308, 726, 883
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 4 cut(s) 89, 208, 705, 876
AflIII ACRYGT 2 cut(s) 168, 222
AgsI TTSAA 2 cut(s) 568, 896
AjnI CCWGG 1 cut(s) 642
AjuI GAANNNNNNNTTGG 4 cut(s) 55, 87, 195, 227
AluBI AGCT 9 cut(s) 69, 148, 219, 365, 630, 952, 967, 1008, 1017
AluI AGCT 9 cut(s) 69, 148, 219, 365, 630, 952, 967, 1008, 1017
Alw21I GWGCWC 1 cut(s) 675
AlwI GGATC 1 cut(s) 511
AlwNI CAGNNNCTG 2 cut(s) 326, 368
Ama87I CYCGRG 2 cut(s) 251, 340
AoxI GGCC 6 cut(s) 195, 543, 679, 707, 819, 929
ApaI GGGCCC 1 cut(s) 823
ApeKI GCWGC 2 cut(s) 277, 365
ApoI RAATTY 4 cut(s) 204, 308, 726, 883
Asp700I GAANNNNTTC 1 cut(s) 727
Asp718I GGTACC 1 cut(s) 440
AspLEI GCGC 3 cut(s) 242, 277, 282
AspS9I GGNCC 5 cut(s) 640, 679, 696, 819, 820
AsuHPI GGTGA 5 cut(s) 223, 658, 705, 836, 982
AvaI CYCGRG 2 cut(s) 251, 340
AvaII GGWCC 2 cut(s) 640, 696
BaeGI GKGCMC 2 cut(s) 823, 918
BalI TGGCCA 2 cut(s) 197, 931
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 823
Bbv12I GWGCWC 1 cut(s) 675
BbvI GCAGC 2 cut(s) 289, 352
BccI CCATC 4 cut(s) 690, 842, 856, 982
BceAI ACGGC 2 cut(s) 101, 164
BciT130I CCWGG 1 cut(s) 644
BciVI GTATCC 1 cut(s) 877
BclI TGATCA 1 cut(s) 580
BfaI CTAG 4 cut(s) 216, 237, 257, 668
BfmI CTRYAG 3 cut(s) 55, 597, 1009
BfoI RGCGCY 1 cut(s) 243
BfuI GTATCC 1 cut(s) 877
BglI GCCNNNNNGGC 1 cut(s) 839
BisI GCNGC 2 cut(s) 278, 366
BlsI GCNGC 2 cut(s) 279, 367
Bme1390I CCNGG 1 cut(s) 644
Bme18I GGWCC 2 cut(s) 640, 696
BmeT110I CYCGRG 2 cut(s) 251, 340
BmgT120I GGNCC 5 cut(s) 640, 679, 696, 819, 820
BmiI GGNNCC 5 cut(s) 213, 442, 779, 821, 822
BmrFI CCNGG 1 cut(s) 644
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 3 cut(s) 103, 312, 499
BmuI ACTGGG 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 780
BsaAI YACGTR 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 865
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 208, 705, 876
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 5 cut(s) 36, 94, 724, 763, 1025
Bse8I GATNNNNATC 1 cut(s) 865
BseBI CCWGG 1 cut(s) 644
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 865
BseLI CCNNNNNNNGG 4 cut(s) 89, 208, 705, 876
BseMII CTCAG 4 cut(s) 142, 158, 318, 333
BseNI ACTGG 5 cut(s) 36, 94, 724, 763, 1025
BseRI GAGGAG 1 cut(s) 554
BseSI GKGCMC 2 cut(s) 823, 918
BseXI GCAGC 2 cut(s) 289, 352
BseYI CCCAGC 1 cut(s) 816
Bsh1236I CGCG 2 cut(s) 282, 677
Bsh1285I CGRYCG 1 cut(s) 787
BshFI GGCC 6 cut(s) 197, 545, 681, 709, 821, 931
BshNI GGYRCC 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 675
BsiHKCI CYCGRG 2 cut(s) 251, 340
BsiSI CCGG 1 cut(s) 243
BslI CCNNNNNNNGG 4 cut(s) 89, 208, 705, 876
BsnI GGCC 6 cut(s) 197, 545, 681, 709, 821, 931
BsoBI CYCGRG 2 cut(s) 251, 340
Bsp120I GGGCCC 1 cut(s) 819
Bsp1286I GDGCHC 3 cut(s) 675, 823, 918
Bsp143I GATC 6 cut(s) 186, 283, 516, 580, 654, 784
BspACI CCGC 3 cut(s) 152, 677, 824
BspANI GGCC 6 cut(s) 197, 545, 681, 709, 821, 931
BspCNI CTCAG 4 cut(s) 141, 157, 319, 332
BspFNI CGCG 2 cut(s) 282, 677
BspLI GGNNCC 5 cut(s) 213, 442, 779, 821, 822
BspPI GGATC 1 cut(s) 511
BspT107I GGYRCC 1 cut(s) 440
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 5 cut(s) 36, 94, 724, 763, 1025
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 6 cut(s) 186, 283, 516, 580, 654, 784
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 644
BstAPI GCANNNNNTGC 2 cut(s) 300, 913
BstBAI YACGTR 1 cut(s) 223
BstC8I GCNNGC 6 cut(s) 150, 244, 248, 363, 675, 679
BstDEI CTNAG 4 cut(s) 128, 144, 319, 327
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 2 cut(s) 282, 677
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 3 cut(s) 242, 277, 282
BstKTI GATC 6 cut(s) 189, 286, 519, 583, 657, 787
BstMBI GATC 6 cut(s) 186, 283, 516, 580, 654, 784
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 6 cut(s) 66, 300, 494, 839, 913, 1014
BstNI CCWGG 1 cut(s) 644
BstNSI RCATGY 4 cut(s) 172, 250, 385, 488
BstSCI CCNGG 1 cut(s) 642
BstSFI CTRYAG 3 cut(s) 55, 597, 1009
BstSLI GKGCMC 2 cut(s) 823, 918
BstUI CGCG 2 cut(s) 282, 677
BstV1I GCAGC 2 cut(s) 289, 352
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BsuI GTATCC 1 cut(s) 877
BsuRI GGCC 6 cut(s) 197, 545, 681, 709, 821, 931
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 87, 717, 756
Cac8I GCNNGC 6 cut(s) 150, 244, 248, 363, 675, 679
CaiI CAGNNNCTG 2 cut(s) 326, 368
CfoI GCGC 3 cut(s) 242, 277, 282
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 5 cut(s) 640, 679, 696, 819, 820
CseI GACGC 1 cut(s) 332
CsiI ACCWGGT 1 cut(s) 642
Csp6I GTAC 1 cut(s) 441
CviAII CATG 9 cut(s) 75, 104, 169, 247, 382, 485, 494, 908, 927
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 4 cut(s) 128, 144, 319, 327
DpnI GATC 6 cut(s) 188, 285, 518, 582, 656, 786
DpnII GATC 6 cut(s) 186, 283, 516, 580, 654, 784
DraI TTTAAA 1 cut(s) 313
EaeI YGGCCR 2 cut(s) 195, 929
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 1 cut(s) 823
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 640, 696
Eco88I CYCGRG 2 cut(s) 251, 340
EcoO109I RGGNCCY 1 cut(s) 820
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 1 cut(s) 642
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 9 cut(s) 78, 107, 172, 250, 385, 488, 497, 911, 930
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FatI CATG 9 cut(s) 74, 103, 168, 246, 381, 484, 493, 907, 926
FauI CCCGC 3 cut(s) 145, 670, 831
FbaI TGATCA 1 cut(s) 580
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 278, 366
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 2 cut(s) 278, 366
FspBI CTAG 4 cut(s) 216, 237, 257, 668
GlaI GCGC 3 cut(s) 241, 276, 281
GluI GCNGC 2 cut(s) 278, 366
GsaI CCCAGC 1 cut(s) 820
GsuI CTGGAG 1 cut(s) 780
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 6 cut(s) 197, 545, 681, 709, 821, 931
HapII CCGG 1 cut(s) 243
HgaI GACGC 1 cut(s) 332
HhaI GCGC 3 cut(s) 242, 277, 282
Hin1II CATG 9 cut(s) 78, 107, 172, 250, 385, 488, 497, 911, 930
Hin6I GCGC 3 cut(s) 240, 275, 280
HinP1I GCGC 3 cut(s) 240, 275, 280
HincII GTYRAC 2 cut(s) 95, 166
HindII GTYRAC 2 cut(s) 95, 166
HindIII AAGCTT 1 cut(s) 628
HinfI GANTC 7 cut(s) 134, 142, 317, 407, 479, 533, 762
HpaII CCGG 1 cut(s) 243
HphI GGTGA 5 cut(s) 223, 658, 705, 836, 982
Hpy166II GTNNAC 4 cut(s) 95, 166, 394, 468
Hpy188I TCNGA 4 cut(s) 322, 508, 538, 798
Hpy188III TCNNGA 3 cut(s) 340, 565, 893
Hpy8I GTNNAC 4 cut(s) 95, 166, 394, 468
Hpy99I CGWCG 2 cut(s) 167, 194
HpyAV CCTTC 3 cut(s) 720, 967, 1036
HpyCH4IV ACGT 2 cut(s) 222, 464
HpyCH4V TGCA 2 cut(s) 303, 941
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 300, 494, 839, 913, 1014
HpyF3I CTNAG 4 cut(s) 128, 144, 319, 327
HpySE526I ACGT 2 cut(s) 222, 464
Hsp92II CATG 9 cut(s) 78, 107, 172, 250, 385, 488, 497, 911, 930
HspAI GCGC 3 cut(s) 240, 275, 280
KpnI GGTACC 1 cut(s) 444
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 186, 283, 516, 580, 654, 784
LmnI GCTCC 1 cut(s) 1014
Lsp1109I GCAGC 2 cut(s) 289, 352
LweI GCATC 3 cut(s) 103, 312, 499
MabI ACCWGGT 1 cut(s) 642
MaeI CTAG 4 cut(s) 216, 237, 257, 668
MaeII ACGT 2 cut(s) 222, 464
MaeIII GTNAC 3 cut(s) 118, 400, 740
MalI GATC 6 cut(s) 188, 285, 518, 582, 656, 786
MboI GATC 6 cut(s) 186, 283, 516, 580, 654, 784
MboII GAAGA 2 cut(s) 220, 735
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 3 cut(s) 675, 823, 918
MlsI TGGCCA 2 cut(s) 197, 931
MluCI AATT 7 cut(s) 204, 308, 726, 883, 977, 983, 996
MluNI TGGCCA 2 cut(s) 197, 931
MlyI GAGTC 4 cut(s) 136, 143, 311, 771
MmeI TCCRAC 1 cut(s) 510
Mox20I TGGCCA 2 cut(s) 197, 931
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 727
MscI TGGCCA 2 cut(s) 197, 931
MseI TTAA 2 cut(s) 312, 954
Msp20I TGGCCA 2 cut(s) 197, 931
MspA1I CMGCKG 2 cut(s) 365, 967
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 644
MteI GCGCNGCGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 644
MvnI CGCG 2 cut(s) 282, 677
MwoI GCNNNNNNNGC 6 cut(s) 66, 300, 494, 839, 913, 1014
NaeI GCCGGC 1 cut(s) 244
NdeII GATC 6 cut(s) 186, 283, 516, 580, 654, 784
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 9 cut(s) 78, 107, 172, 250, 385, 488, 497, 911, 930
NlaIV GGNNCC 5 cut(s) 213, 442, 779, 821, 822
NmeAIII GCCGAG 1 cut(s) 538
NmuCI GTSAC 2 cut(s) 118, 740
NspI RCATGY 4 cut(s) 172, 250, 385, 488
PaeI GCATGC 1 cut(s) 250
PciI ACATGT 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 727
PfeI GAWTC 3 cut(s) 407, 479, 533
PkrI GCNGC 2 cut(s) 279, 367
Ple19I CGATCG 1 cut(s) 787
PleI GAGTC 4 cut(s) 136, 142, 311, 770
PpsI GAGTC 4 cut(s) 136, 142, 311, 770
Ppu21I YACGTR 1 cut(s) 223
PscI ACATGT 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 816
PspGI CCWGG 1 cut(s) 642
PspN4I GGNNCC 5 cut(s) 213, 442, 779, 821, 822
PspOMI GGGCCC 1 cut(s) 819
PspPI GGNCC 5 cut(s) 640, 679, 696, 819, 820
PstNI CAGNNNCTG 2 cut(s) 326, 368
PsuI RGATCY 1 cut(s) 516
PvuI CGATCG 1 cut(s) 787
PvuII CAGCTG 2 cut(s) 365, 967
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 312, 954
SatI GCNGC 2 cut(s) 278, 366
Sau3AI GATC 6 cut(s) 186, 283, 516, 580, 654, 784
Sau96I GGNCC 5 cut(s) 640, 679, 696, 819, 820
SchI GAGTC 4 cut(s) 136, 143, 311, 771
ScrFI CCNGG 1 cut(s) 644
SduI GDGCHC 3 cut(s) 675, 823, 918
SexAI ACCWGGT 1 cut(s) 642
SfaNI GCATC 3 cut(s) 103, 312, 499
SfcI CTRYAG 3 cut(s) 55, 597, 1009
SinI GGWCC 2 cut(s) 640, 696
SphI GCATGC 1 cut(s) 250
Sse9I AATT 7 cut(s) 204, 308, 726, 883, 977, 983, 996
SsiI CCGC 3 cut(s) 152, 677, 824
SspMI CTAG 4 cut(s) 216, 237, 257, 668
StyD4I CCNGG 1 cut(s) 642
StyI CCWWGG 1 cut(s) 444
TaiI ACGT 2 cut(s) 225, 467
TaqI TCGA 4 cut(s) 165, 306, 783, 787
TasI AATT 7 cut(s) 204, 308, 726, 883, 977, 983, 996
TfiI GAWTC 3 cut(s) 407, 479, 533
Tru1I TTAA 2 cut(s) 312, 954
Tru9I TTAA 2 cut(s) 312, 954
TscAI CASTG 3 cut(s) 94, 724, 763
TseFI GTSAC 2 cut(s) 118, 740
TseI GCWGC 2 cut(s) 277, 365
Tsp45I GTSAC 2 cut(s) 118, 740
TspDTI ATGAA 2 cut(s) 63, 482
TspRI CASTG 3 cut(s) 94, 724, 763
VpaK11BI GGWCC 2 cut(s) 640, 696
XapI RAATTY 4 cut(s) 204, 308, 726, 883
XceI RCATGY 4 cut(s) 172, 250, 385, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 727
XspI CTAG 4 cut(s) 216, 237, 257, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.