Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010935.1

Orthogroup ID

OG0013600

Physical Location & Seq

Genomic Coordinates Reverse (-)

1288 .. 2491

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010935.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggtagctatagtatctcaacaaaacatggtttctcgcacaggaaggcacttgcagcgctacagcaaaggtcgtcgccaagtcgtaggatgtattccatatagatataaaaattccaagcagagtccctcaaaggatgatgatgcaaacgaactagaagttcttgtcattacttcacaaaagggcaaagggatgctcttcccaaagggagggtgggaattagatgaatccaaggaaggggcagcctctcgagagacgctggaggaagccggggtacgaggaactattgagtgtgaattgggtaagtggagtttcaagagcaaatcccatgatacttactacgtaggttacatgttcccattacacgttcaggagcagttagatttctggccggagaagaacctgcgtcaaagaatttggatgagtgttcaagaagcaagagaagtttgtcagcatgggtggatgaaagaagccttagatagattagtaagtcgtctcacatctcaacaacaacaacatgaagaccaagcattaggccctgtccttaaatcgatgagggcaaatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

189

Amino Acids

21.8

Weight (kDa)

8.94

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013600)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30240
malus_domestica	MD09G1270800.v1.1 MD17G1269000.v1.1
prunus_persica	Prupe.3G017600_v2.0.a1
pyrus_communis	pycom09g18190 pycom17g26770
rosa_chinensis	RchiOBHm_Chr3g0491151
rosa_laevigata	RLG00000022859
rosa_multiflora	Rmu_sc0010935.1_g000001 Rmu_sc0016107.1_g000002 Rmu_sc0024833.1_g000004
rosa_roxburghii	Rroxscaffold_6G00393120
rosa_rugosa	Rorug03G0246500
rosa_samantha	Rh3AG296900 Rh3BG332900 Rh3CG330000 Rh3DG330600
rosa_wichuraiana	Rw3G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	411
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	112, 414
AfaI	GTAC	1 cut(s)	276
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	209, 237
AflIII	ACRYGT	2 cut(s)	351, 364
AgsI	TTSAA	2 cut(s)	316, 431
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	248, 500
Ama87I	CYCGRG	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	389, 535
ApeKI	GCWGC	2 cut(s)	55, 242
ApoI	RAATTY	2 cut(s)	112, 414
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	536
AsuC2I	CCSGG	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	249
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	67, 254
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	248, 500
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	9, 61
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	411
BisI	GCNGC	2 cut(s)	56, 243
BlsI	GCNGC	2 cut(s)	57, 244
Bme1390I	CCNGG	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	133, 183
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	231, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 237
BseCI	ATCGAT	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	231, 270
BseGI	GGATG	5 cut(s)	95, 142, 198, 426, 468
BseLI	CCNNNNNNNGG	2 cut(s)	209, 237
BseXI	GCAGC	2 cut(s)	67, 254
BshFI	GGCC	2 cut(s)	391, 537
BshVI	ATCGAT	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	2 cut(s)	270, 392
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	209, 237
BsmAI	GTCTC	2 cut(s)	248, 500
BsmBI	CGTCTC	2 cut(s)	248, 500
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	391, 537
BsoBI	CYCGRG	1 cut(s)	249
BspANI	GGCC	2 cut(s)	391, 537
BspDI	ATCGAT	1 cut(s)	551
BspMI	ACCTGC	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	231, 270
BssT1I	CCWWGG	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	475
BstF5I	GGATG	5 cut(s)	95, 142, 198, 426, 468
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	2 cut(s)	248, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	2 cut(s)	9, 61
BstSNI	TACGTA	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	67, 254
BstV2I	GAAGAC	1 cut(s)	528
Bsu15I	ATCGAT	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	391, 537
BsuTUI	ATCGAT	1 cut(s)	551
BtsCI	GGATG	5 cut(s)	95, 142, 198, 426, 468
BveI	ACCTGC	1 cut(s)	411
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	1 cut(s)	551
CseI	GACGC	2 cut(s)	265, 395
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	5 cut(s)	28, 329, 352, 455, 518
CviJI	RGCY	6 cut(s)	8, 245, 269, 391, 473, 537
CviKI_1	RGCY	6 cut(s)	8, 245, 269, 391, 473, 537
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco105I	TACGTA	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	249
EcoO109I	RGGNCCY	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	2 cut(s)	248, 500
FaeI	CATG	5 cut(s)	31, 332, 355, 458, 521
FaiI	YATR	9 cut(s)	11, 29, 100, 102, 108, 330, 353, 456, 519
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	5 cut(s)	27, 328, 351, 454, 517
Fnu4HI	GCNGC	2 cut(s)	56, 243
FokI	GGATG	5 cut(s)	102, 149, 205, 433, 475
Fsp4HI	GCNGC	2 cut(s)	56, 243
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	56, 243
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	391, 537
HapII	CCGG	2 cut(s)	270, 392
HgaI	GACGC	2 cut(s)	265, 395
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	5 cut(s)	31, 332, 355, 458, 521
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	2 cut(s)	124, 227
HpaII	CCGG	2 cut(s)	270, 392
Hpy188III	TCNNGA	5 cut(s)	249, 251, 316, 371, 431
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	2 cut(s)	39, 230
HpyCH4IV	ACGT	2 cut(s)	342, 366
HpyCH4V	TGCA	2 cut(s)	55, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	475
HpySE526I	ACGT	2 cut(s)	342, 366
Hsp92II	CATG	5 cut(s)	31, 332, 355, 458, 521
HspAI	GCGC	1 cut(s)	58
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	8 cut(s)	27, 245, 283, 356, 373, 405, 416, 552
Lsp1109I	GCAGC	2 cut(s)	67, 254
LweI	GCATC	2 cut(s)	133, 183
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	342, 366
MaeIII	GTNAC	1 cut(s)	347
MboII	GAAGA	3 cut(s)	190, 409, 533
MluCI	AATT	4 cut(s)	112, 218, 296, 414
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	139, 203, 256, 256, 272, 549
MseI	TTAA	1 cut(s)	546
MspI	CCGG	2 cut(s)	270, 392
MspR9I	CCNGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	271
NlaIII	CATG	5 cut(s)	31, 332, 355, 458, 521
NspI	RCATGY	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	249
PciI	ACATGT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	57, 244
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	343
PscI	ACATGT	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	536
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	56, 243
Sau96I	GGNCC	1 cut(s)	536
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	6 cut(s)	10, 73, 345, 349, 369, 405
SfaNI	GCATC	2 cut(s)	133, 183
SfcI	CTRYAG	2 cut(s)	9, 61
Sfr274I	CTCGAG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
SnaBI	TACGTA	1 cut(s)	343
Sse9I	AATT	4 cut(s)	112, 218, 296, 414
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	2 cut(s)	345, 369
TaqI	TCGA	2 cut(s)	250, 551
TasI	AATT	4 cut(s)	112, 218, 296, 414
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseI	GCWGC	2 cut(s)	55, 242
TspDTI	ATGAA	3 cut(s)	240, 479, 534
XapI	RAATTY	2 cut(s)	112, 414
XceI	RCATGY	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	1 cut(s)	210
XhoI	CTCGAG	1 cut(s)	249
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.