Rroxscaffold_6G00393120

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013600
Physical Location & Seq
Forward (+)
12964905 .. 12966502
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393120.1

Sequence Viewer

Length: 567 bp
ATGGTAGCTATAGTATCTCAAGAAAACATGGTTTCTCGCACAGGAAGGCATTTGCAGCGCTACAGCAAAGGTCGTCGCCAAGTCGTAGGATGTATTCCATATAGATATAAAAATTCCAAGCAGAGTCCCTCAAAGCATGATGATGCAAACGAACTAGAAGTTCTTGTCATTACTTCACAAAAGGGCAAAGGGATGCTCTTCCCAAAGGGAGGGTGGGAATTAGATGAATCCAAGGAAGGGGCAGCCTCTCGAGAGACGCTGGAGGAAGCCGGGGTACGAGGAACTATTGAGTGTGAATTGGGCAAGTGGAGTTTCAAGAGCAAATCCCATGACACATACTACGTAGGTTACATGTTCCCATTACACGTTCAGGAGCAGTTAGATTTCTGGCCGGAGAAGAACCTTCGTCAAAGAATTTGGATGAGTGTTCAAGAAGCAAGAGACGTTTGTCAGCATTGGTGGATGAAAGAAGCCTTAGATACATTAGTAAGTCGTCTCACATCTCAACAACAACATGAAGACCAAGAATTAGGCCCTGTCCTTAAATCAATGAGGGCAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

188

Amino Acids

21.82

Weight (kDa)

8.39

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 53 - 158 2.3e-09 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 389
AcsI RAATTY 2 cut(s) 112, 414
AfaI GTAC 1 cut(s) 276
AfeI AGCGCT 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 209, 237
AflIII ACRYGT 2 cut(s) 351, 364
AgsI TTSAA 2 cut(s) 316, 431
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 248, 435, 500
Ama87I CYCGRG 1 cut(s) 249
Aor51HI AGCGCT 1 cut(s) 59
AoxI GGCC 2 cut(s) 389, 532
ApeKI GCWGC 2 cut(s) 55, 242
ApoI RAATTY 2 cut(s) 112, 414
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 533
AsuC2I CCSGG 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 249
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
BbsI GAAGAC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 67, 254
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 248, 435, 500
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 9, 61
BfoI RGCGCY 1 cut(s) 61
BisI GCNGC 2 cut(s) 56, 243
BlsI GCNGC 2 cut(s) 57, 244
Bme1390I CCNGG 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 2 cut(s) 133, 183
BoxI GACNNNNGTC 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 231, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 237
BseDI CCNNGG 2 cut(s) 231, 270
BseGI GGATG 4 cut(s) 95, 198, 426, 468
BseLI CCNNNNNNNGG 2 cut(s) 209, 237
BseXI GCAGC 2 cut(s) 67, 254
BshFI GGCC 2 cut(s) 391, 534
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 270, 392
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 209, 237
BsmAI GTCTC 3 cut(s) 248, 435, 500
BsmBI CGTCTC 3 cut(s) 248, 435, 500
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 2 cut(s) 391, 534
BsoBI CYCGRG 1 cut(s) 249
BspANI GGCC 2 cut(s) 391, 534
BspQI GCTCTTC 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 231, 270
BssT1I CCWWGG 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 4 cut(s) 95, 198, 426, 468
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstMAI GTCTC 3 cut(s) 248, 435, 500
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 355
BstPAI GACNNNNGTC 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 2 cut(s) 9, 61
BstSNI TACGTA 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 67, 254
BstV2I GAAGAC 1 cut(s) 525
BsuRI GGCC 2 cut(s) 391, 534
BtsCI GGATG 4 cut(s) 95, 198, 426, 468
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 533
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 275
CviAII CATG 5 cut(s) 28, 137, 329, 352, 515
CviJI RGCY 6 cut(s) 8, 245, 269, 391, 473, 534
CviKI_1 RGCY 6 cut(s) 8, 245, 269, 391, 473, 534
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco105I TACGTA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 3 cut(s) 248, 435, 500
FaeI CATG 5 cut(s) 31, 140, 332, 355, 518
FaqI GGGAC 1 cut(s) 111
FatI CATG 5 cut(s) 27, 136, 328, 351, 514
Fnu4HI GCNGC 2 cut(s) 56, 243
FokI GGATG 4 cut(s) 102, 205, 433, 475
Fsp4HI GCNGC 2 cut(s) 56, 243
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 56, 243
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 2 cut(s) 391, 534
HapII CCGG 2 cut(s) 270, 392
HgaI GACGC 1 cut(s) 265
HhaI GCGC 1 cut(s) 60
Hin1II CATG 5 cut(s) 31, 140, 332, 355, 518
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 124, 227
HpaII CCGG 2 cut(s) 270, 392
Hpy188III TCNNGA 6 cut(s) 20, 249, 251, 316, 371, 431
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 39, 230, 413
HpyCH4IV ACGT 3 cut(s) 342, 366, 444
HpyCH4V TGCA 2 cut(s) 55, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 3 cut(s) 342, 366, 444
Hsp92II CATG 5 cut(s) 31, 140, 332, 355, 518
HspAI GCGC 1 cut(s) 58
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 7 cut(s) 27, 245, 283, 356, 373, 405, 549
Lsp1109I GCAGC 2 cut(s) 67, 254
LweI GCATC 2 cut(s) 133, 183
MaeI CTAG 1 cut(s) 155
MaeII ACGT 3 cut(s) 342, 366, 444
MaeIII GTNAC 1 cut(s) 347
MboII GAAGA 3 cut(s) 190, 409, 530
MluCI AATT 5 cut(s) 112, 218, 296, 414, 527
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 6 cut(s) 139, 203, 256, 256, 272, 546
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 2 cut(s) 270, 392
MspR9I CCNGG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 271
NlaIII CATG 5 cut(s) 31, 140, 332, 355, 518
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 249
PciI ACATGT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 57, 244
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 343
PscI ACATGT 1 cut(s) 351
PshAI GACNNNNGTC 1 cut(s) 447
PspPI GGNCC 1 cut(s) 533
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 2 cut(s) 56, 243
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 271
SetI ASST 7 cut(s) 10, 73, 345, 349, 369, 405, 447
SfaNI GCATC 2 cut(s) 133, 183
SfcI CTRYAG 2 cut(s) 9, 61
Sfr274I CTCGAG 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 18, 249
SmoI CTYRAG 2 cut(s) 18, 249
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 5 cut(s) 112, 218, 296, 414, 527
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 3 cut(s) 345, 369, 447
TaqI TCGA 1 cut(s) 250
TasI AATT 5 cut(s) 112, 218, 296, 414, 527
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TseI GCWGC 2 cut(s) 55, 242
TspDTI ATGAA 3 cut(s) 240, 479, 531
XapI RAATTY 2 cut(s) 112, 414
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 249
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.