Rw3G026190

Nudix hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013600
Physical Location & Seq
Reverse (-)
35674266 .. 35675460
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G026190.1

Sequence Viewer

Length: 570 bp
ATGGTAGCTATAGTATCTCAAGAAAACATGGTTTCTCGCACAGGAAGGCATTTGCAGCGCTACAGCAAGGGTCGTCGCCAAGTCGTAGGATGTATTCCATATAGATATAAAAATTCCAAGCAGAGTCCCTCAAAGGATGATGATGCAAACGAACTAGAAGTTCTTGTCATTACTTCACAAAAGGGCAAAGGGATGCTCTTCCCAAAGGGAGGGTGGGAATTAGATGAATCCAAGGAAGGGGCAGCCTCTCGAGAGACGCTGGAGGAAGCCGGGGTACGAGGAACTATTGAGTGTGAATTGGGTAAGTGGAGTTTCAAGAGCAAATCCCATGACACTTACTACGTAGGTTACATGTTCCCATTACACGTTCAGGAGCAGTTAGATTTCTGGCCGGAGAAGAACCTGCGTCAAAGAATTTGGATGAGTGTTCAAGAAGCAAGAGCAGTTTGTCAGCATTGGTGGATGAAAGAAGCCTTAGATAGATTAGTAAGTCGTCTCACGTCTCAACAACAACAACATGAAGACCAAGAATTAGGCCCTGTCCTTAAATCAATGAGGGCAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

189

Amino Acids

21.93

Weight (kDa)

8.72

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 53 - 161 1.3e-09 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 389
AcsI RAATTY 2 cut(s) 112, 414
AfaI GTAC 1 cut(s) 276
AfeI AGCGCT 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 209, 237
AflIII ACRYGT 2 cut(s) 351, 364
AgsI TTSAA 2 cut(s) 316, 431
AjiI CACGTC 1 cut(s) 501
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 248, 500, 507
Ama87I CYCGRG 1 cut(s) 249
Aor51HI AGCGCT 1 cut(s) 59
AoxI GGCC 2 cut(s) 389, 535
ApeKI GCWGC 2 cut(s) 55, 242
ApoI RAATTY 2 cut(s) 112, 414
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 249
BarI GAAGNNNNNNTAC 2 cut(s) 258, 290
BbsI GAAGAC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 67, 254
BcnI CCSGG 1 cut(s) 271
BcoDI GTCTC 3 cut(s) 248, 500, 507
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 9, 61
BfoI RGCGCY 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 411
BisI GCNGC 2 cut(s) 56, 243
BlsI GCNGC 2 cut(s) 57, 244
Bme1390I CCNGG 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 249
BmgBI CACGTC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 536
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 2 cut(s) 133, 183
BpiI GAAGAC 1 cut(s) 528
BpmI CTGGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 343
BsaJI CCNNGG 2 cut(s) 231, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 237
BseDI CCNNGG 2 cut(s) 231, 270
BseGI GGATG 5 cut(s) 95, 142, 198, 426, 468
BseLI CCNNNNNNNGG 2 cut(s) 209, 237
BseXI GCAGC 2 cut(s) 67, 254
BshFI GGCC 2 cut(s) 391, 537
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 2 cut(s) 270, 392
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 209, 237
BsmAI GTCTC 3 cut(s) 248, 500, 507
BsmBI CGTCTC 3 cut(s) 248, 500, 507
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 2 cut(s) 391, 537
BsoBI CYCGRG 1 cut(s) 249
BspANI GGCC 2 cut(s) 391, 537
BspMI ACCTGC 1 cut(s) 411
BspQI GCTCTTC 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 231, 270
BssT1I CCWWGG 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 203
BstBAI YACGTR 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 475
BstF5I GGATG 5 cut(s) 95, 142, 198, 426, 468
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstMAI GTCTC 3 cut(s) 248, 500, 507
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 355
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 2 cut(s) 9, 61
BstSNI TACGTA 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 67, 254
BstV2I GAAGAC 1 cut(s) 528
BsuRI GGCC 2 cut(s) 391, 537
BtrI CACGTC 1 cut(s) 501
BtsCI GGATG 5 cut(s) 95, 142, 198, 426, 468
BveI ACCTGC 1 cut(s) 411
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 536
CseI GACGC 2 cut(s) 265, 395
Csp6I GTAC 1 cut(s) 275
CviAII CATG 4 cut(s) 28, 329, 352, 518
CviJI RGCY 6 cut(s) 8, 245, 269, 391, 473, 537
CviKI_1 RGCY 6 cut(s) 8, 245, 269, 391, 473, 537
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco105I TACGTA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 231
Eco47III AGCGCT 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 536
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 3 cut(s) 248, 500, 507
FaeI CATG 4 cut(s) 31, 332, 355, 521
FaiI YATR 8 cut(s) 11, 29, 100, 102, 108, 330, 353, 519
FaqI GGGAC 1 cut(s) 111
FatI CATG 4 cut(s) 27, 328, 351, 517
Fnu4HI GCNGC 2 cut(s) 56, 243
FokI GGATG 5 cut(s) 102, 149, 205, 433, 475
Fsp4HI GCNGC 2 cut(s) 56, 243
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 56, 243
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 2 cut(s) 391, 537
HapII CCGG 2 cut(s) 270, 392
HgaI GACGC 2 cut(s) 265, 395
HhaI GCGC 1 cut(s) 60
Hin1II CATG 4 cut(s) 31, 332, 355, 521
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 124, 227
HpaII CCGG 2 cut(s) 270, 392
Hpy188III TCNNGA 6 cut(s) 20, 249, 251, 316, 371, 431
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 39, 230
HpyCH4IV ACGT 3 cut(s) 342, 366, 500
HpyCH4V TGCA 2 cut(s) 55, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 475
HpySE526I ACGT 3 cut(s) 342, 366, 500
Hsp92II CATG 4 cut(s) 31, 332, 355, 521
HspAI GCGC 1 cut(s) 58
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 8 cut(s) 27, 245, 283, 356, 373, 405, 416, 552
Lsp1109I GCAGC 2 cut(s) 67, 254
LweI GCATC 2 cut(s) 133, 183
MaeI CTAG 1 cut(s) 155
MaeII ACGT 3 cut(s) 342, 366, 500
MaeIII GTNAC 1 cut(s) 347
MboII GAAGA 3 cut(s) 190, 409, 533
MluCI AATT 5 cut(s) 112, 218, 296, 414, 530
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 6 cut(s) 139, 203, 256, 256, 272, 549
MseI TTAA 1 cut(s) 546
MspI CCGG 2 cut(s) 270, 392
MspR9I CCNGG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 271
NlaIII CATG 4 cut(s) 31, 332, 355, 521
NspI RCATGY 1 cut(s) 355
PaeR7I CTCGAG 1 cut(s) 249
PciI ACATGT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 57, 244
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 343
PscI ACATGT 1 cut(s) 351
PspPI GGNCC 1 cut(s) 536
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 2 cut(s) 56, 243
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 271
SetI ASST 6 cut(s) 10, 345, 349, 369, 405, 503
SfaNI GCATC 2 cut(s) 133, 183
SfcI CTRYAG 2 cut(s) 9, 61
Sfr274I CTCGAG 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 18, 249
SmoI CTYRAG 2 cut(s) 18, 249
SnaBI TACGTA 1 cut(s) 343
Sse9I AATT 5 cut(s) 112, 218, 296, 414, 530
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 3 cut(s) 345, 369, 503
TaqI TCGA 1 cut(s) 250
TasI AATT 5 cut(s) 112, 218, 296, 414, 530
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseI GCWGC 2 cut(s) 55, 242
TspDTI ATGAA 3 cut(s) 240, 479, 534
XapI RAATTY 2 cut(s) 112, 414
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 249
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.