Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013600

Physical Location & Seq

Genomic Coordinates Forward (+)

23095858 .. 23097249

Gene Structure 1392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0246500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGACCTCAAGCTCTCCACCCTCCTCTGCTTTTCTCTGTTCTTCTCCACTATCCTAACCCCAACTCTCTCTGAGCTCTGCAACCCTCAAGACAAAAAGGTTCTCTTCGAAATCAAGACAGCCTTTAACAACCCCTACATCTTGTCCTCATGGAAATCCAACGCCGACTGCTGTACCGACTGGTACAACGTCGAGTGTGATCCCAACACCAACCGCATCAACTCCCTCACCATCTTCACCGACAACCGCCTCACCGGCCAAATCCCCGCCCAAGTCGGAGACTTGCCCTACCTCGAAACCCTCGAGCTCCGCAAGCTCCCCAATCTCACCGGTCCCATCCAGCCATCCATCGCCAAGCTCAAGCACCTCAAGATGCTCAGGCTCAGCTGGAACGGCCTCTCAGGCTCAGTCCCTGACTTCCTCAGCCAGCTCAAGAACCTCACCTTCCTCGAACTCAACTTCAACAACTTCACAGGCTCCATCCCCAGCTCGCTTTCTCAGCTACCGAACTTATTAGCCCTTCATCTAGACCGCAACCAGCTCACAGGTCATATTCCTAGCTCATTCGGACGATTCGTTGGCACCGTTCCAGATCTATTCCTCTCCCACAACCAGCTCACGGGCAAAATCCCAACCTCATTTGCTAACATGAACTTTAATCAAATAGACTTGTCACGCAACAAGCTTGAAGGCGATGCGTCAGTTATATTCGGGTTGAACAAGACGACCCAGATTGTGGATTTATCGAGGAACATGCTGGACTTCGATCTGTCCAAGGTGGTGTTTTCGACAAGCTTGAGTTCGGTGGACTTGAACCATAACAGGATCACAGGGAGTATTCCGGAGCAGTTGACACAATTGGATAATTTGCAGTTGTTCAATGTGAGCTACAACAGGTTGTGTGGTCAGATTCCGGTAGGTGGGAAGTTGCAGAGCTTGGACACCACGTCGTATTTCCATAACCGATGCCTTTGTGGTGCCCCACTCCCAAGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0016787 GO:0016817 GO:0016818 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

332

Amino Acids

37.01

Weight (kDa)

6.98

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	8.2e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	86 - 178	1e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013600)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g30240
malus_domestica	MD09G1270800.v1.1 MD17G1269000.v1.1
prunus_persica	Prupe.3G017600_v2.0.a1
pyrus_communis	pycom09g18190 pycom17g26770
rosa_chinensis	RchiOBHm_Chr3g0491151
rosa_laevigata	RLG00000022859
rosa_multiflora	Rmu_sc0010935.1_g000001 Rmu_sc0016107.1_g000002 Rmu_sc0024833.1_g000004
rosa_roxburghii	Rroxscaffold_6G00393120
rosa_rugosa	Rorug03G0246500
rosa_samantha	Rh3AG296900 Rh3BG332900 Rh3CG330000 Rh3DG330600
rosa_wichuraiana	Rw3G026190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	581, 977
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccIII	TCCGGA	1 cut(s)	841
AciI	CCGC	5 cut(s)	214, 247, 267, 310, 532
AclWI	GGATC	2 cut(s)	194, 833
AcoI	YGGCCR	1 cut(s)	256
AfaI	GTAC	2 cut(s)	175, 185
AfiI	CCNNNNNNNGG	3 cut(s)	619, 736, 920
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	463, 689, 718, 814, 880
AhdI	GACNNNNNGTC	1 cut(s)	946
AjiI	CACGTC	1 cut(s)	948
Alw21I	GWGCWC	2 cut(s)	78, 309
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	194, 833
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	841
AoxI	GGCC	2 cut(s)	256, 394
AsiGI	ACCGGT	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	4, 332
AsuHPI	GGTGA	5 cut(s)	220, 229, 244, 319, 433
AsuII	TTCGAA	1 cut(s)	108
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	4, 332
BaeGI	GKGCMC	1 cut(s)	982
BaeI	ACNNNNGTAYC	2 cut(s)	157, 190
BanI	GGYRCC	2 cut(s)	581, 977
BanII	GRGCYC	2 cut(s)	78, 309
Bbv12I	GWGCWC	2 cut(s)	78, 309
BbvCI	CCTCAGC	1 cut(s)	422
BccI	CCATC	5 cut(s)	239, 344, 352, 356, 488
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	736, 770
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	3 cut(s)	527, 558, 997
BglI	GCCNNNNNGGC	2 cut(s)	255, 402
BglII	AGATCT	1 cut(s)	592
BlpI	GCTNAGC	1 cut(s)	383
Bme18I	GGWCC	2 cut(s)	4, 332
BmeRI	GACNNNNNGTC	1 cut(s)	946
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	4 cut(s)	334, 478, 583, 979
BmsI	GCATC	4 cut(s)	225, 363, 685, 956
Bpu10I	CCTNAGC	2 cut(s)	377, 422
Bpu1102I	GCTNAGC	1 cut(s)	383
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	5 cut(s)	72, 344, 353, 416, 817
BsaJI	CCNNGG	1 cut(s)	774
BsaWI	WCCGGW	3 cut(s)	329, 841, 913
Bsc4I	CCNNNNNNNGG	3 cut(s)	619, 736, 920
Bse118I	RCCGGY	2 cut(s)	254, 329
Bse1I	ACTGG	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	841
BseDI	CCNNGG	1 cut(s)	774
BseGI	GGATG	3 cut(s)	336, 344, 480
BseLI	CCNNNNNNNGG	3 cut(s)	619, 736, 920
BseMII	CTCAG	7 cut(s)	63, 391, 397, 414, 420, 436, 512
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	982
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	2 cut(s)	258, 396
BshNI	GGYRCC	2 cut(s)	581, 977
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	78, 309
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	255, 330, 842, 914
BslFI	GGGAC	2 cut(s)	318, 395
BslI	CCNNNNNNNGG	3 cut(s)	619, 736, 920
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	318, 395
BsnI	GGCC	2 cut(s)	258, 396
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	3 cut(s)	78, 309, 982
Bsp13I	TCCGGA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	199, 592, 766, 825
Bsp1720I	GCTNAGC	1 cut(s)	383
BspACI	CCGC	5 cut(s)	214, 247, 267, 310, 532
BspANI	GGCC	2 cut(s)	258, 396
BspCNI	CTCAG	7 cut(s)	64, 390, 396, 413, 419, 435, 511
BspEI	TCCGGA	1 cut(s)	841
BspLI	GGNNCC	4 cut(s)	334, 478, 583, 979
BspPI	GGATC	2 cut(s)	194, 833
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	2 cut(s)	581, 977
BsrFI	RCCGGY	2 cut(s)	254, 329
BsrI	ACTGG	1 cut(s)	185
BssAI	RCCGGY	2 cut(s)	254, 329
BssECI	CCNNGG	1 cut(s)	774
BssMI	GATC	4 cut(s)	199, 592, 766, 825
BssT1I	CCWWGG	1 cut(s)	774
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	110
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	314, 428, 491
BstDEI	CTNAG	7 cut(s)	72, 377, 383, 400, 406, 422, 498
BstF5I	GGATG	3 cut(s)	336, 344, 480
BstKTI	GATC	4 cut(s)	202, 595, 769, 828
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	199, 592, 766, 825
BstMWI	GCNNNNNNNGC	5 cut(s)	255, 313, 393, 402, 499
BstNSI	RCATGY	1 cut(s)	757
BstSLI	GKGCMC	1 cut(s)	982
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	258, 396
BtgZI	GCGATG	2 cut(s)	334, 708
BtrI	CACGTC	1 cut(s)	948
BtsCI	GGATG	3 cut(s)	336, 344, 480
Cac8I	GCNNGC	3 cut(s)	314, 428, 491
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	2 cut(s)	254, 329
Cfr13I	GGNCC	2 cut(s)	4, 332
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	174, 184
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	150, 649, 754
CviQI	GTAC	2 cut(s)	174, 184
DdeI	CTNAG	7 cut(s)	72, 377, 383, 400, 406, 422, 498
DpnI	GATC	4 cut(s)	201, 594, 768, 827
DpnII	GATC	4 cut(s)	199, 592, 766, 825
DriI	GACNNNNNGTC	1 cut(s)	946
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	110
Eam1105I	GACNNNNNGTC	1 cut(s)	946
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	76, 307
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	2 cut(s)	78, 309
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	2 cut(s)	76, 307
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	2 cut(s)	76, 307
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	2 cut(s)	78, 309
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	3 cut(s)	153, 652, 757
FaiI	YATR	7 cut(s)	151, 552, 650, 707, 755, 819, 960
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 107, 139
FaqI	GGGAC	2 cut(s)	318, 395
FatI	CATG	3 cut(s)	149, 648, 753
FauI	CCCGC	1 cut(s)	274
FokI	GGATG	3 cut(s)	323, 331, 467
FriOI	GRGCYC	2 cut(s)	78, 309
FspBI	CTAG	3 cut(s)	527, 558, 997
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	258, 396
HapII	CCGG	4 cut(s)	255, 330, 842, 914
HgaI	GACGC	1 cut(s)	687
Hin1II	CATG	3 cut(s)	153, 652, 757
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	2 cut(s)	683, 793
HinfI	GANTC	2 cut(s)	573, 910
HpaII	CCGG	4 cut(s)	255, 330, 842, 914
HphI	GGTGA	5 cut(s)	220, 229, 244, 319, 433
Hpy166II	GTNNAC	2 cut(s)	808, 852
Hpy188I	TCNGA	4 cut(s)	73, 278, 569, 909
Hpy188III	TCNNGA	7 cut(s)	89, 115, 370, 433, 527, 590, 842
Hpy8I	GTNNAC	2 cut(s)	808, 852
Hpy99I	CGWCG	2 cut(s)	194, 952
HpyAV	CCTTC	3 cut(s)	454, 530, 683
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	2 cut(s)	189, 947
HpyCH4V	TGCA	3 cut(s)	81, 871, 931
HpyF10VI	GCNNNNNNNGC	5 cut(s)	255, 313, 393, 402, 499
HpyF3I	CTNAG	7 cut(s)	72, 377, 383, 400, 406, 422, 498
HpySE526I	ACGT	2 cut(s)	189, 947
Hsp92II	CATG	3 cut(s)	153, 652, 757
Kpn2I	TCCGGA	1 cut(s)	841
Kzo9I	GATC	4 cut(s)	199, 592, 766, 825
LmnI	GCTCC	4 cut(s)	312, 321, 482, 844
LweI	GCATC	4 cut(s)	225, 363, 685, 956
MaeI	CTAG	3 cut(s)	527, 558, 997
MaeII	ACGT	2 cut(s)	189, 947
MaeIII	GTNAC	1 cut(s)	672
MalI	GATC	4 cut(s)	201, 594, 768, 827
MboI	GATC	4 cut(s)	199, 592, 766, 825
MboII	GAAGA	3 cut(s)	34, 97, 226
MfeI	CAATTG	1 cut(s)	857
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	3 cut(s)	78, 309, 982
MluCI	AATT	2 cut(s)	857, 865
MmeI	TCCRAC	2 cut(s)	183, 256
MroI	TCCGGA	1 cut(s)	841
MseI	TTAA	2 cut(s)	126, 657
MspA1I	CMGCKG	1 cut(s)	387
MspI	CCGG	4 cut(s)	255, 330, 842, 914
MunI	CAATTG	1 cut(s)	857
MwoI	GCNNNNNNNGC	5 cut(s)	255, 313, 393, 402, 499
NdeII	GATC	4 cut(s)	199, 592, 766, 825
NlaIII	CATG	3 cut(s)	153, 652, 757
NlaIV	GGNNCC	4 cut(s)	334, 478, 583, 979
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 573, 582
PfeI	GAWTC	2 cut(s)	573, 910
PflMI	CCANNNNNTGG	1 cut(s)	736
PinAI	ACCGGT	1 cut(s)	329
Psp124BI	GAGCTC	2 cut(s)	78, 309
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	4 cut(s)	334, 478, 583, 979
PspPI	GGNCC	2 cut(s)	4, 332
PspXI	VCTCGAGB	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	387
RsaI	GTAC	2 cut(s)	175, 185
RsaNI	GTAC	2 cut(s)	174, 184
SacI	GAGCTC	2 cut(s)	78, 309
SaqAI	TTAA	2 cut(s)	126, 657
Sau3AI	GATC	4 cut(s)	199, 592, 766, 825
Sau96I	GGNCC	2 cut(s)	4, 332
SduI	GDGCHC	3 cut(s)	78, 309, 982
SfaNI	GCATC	4 cut(s)	225, 363, 685, 956
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	2 cut(s)	4, 332
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	7 cut(s)	8, 87, 302, 359, 368, 431, 796
SmoI	CTYRAG	7 cut(s)	8, 87, 302, 359, 368, 431, 796
Sse9I	AATT	2 cut(s)	857, 865
SsiI	CCGC	5 cut(s)	214, 247, 267, 310, 532
SspMI	CTAG	3 cut(s)	527, 558, 997
SstI	GAGCTC	2 cut(s)	78, 309
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	2 cut(s)	192, 950
TaqI	TCGA	8 cut(s)	108, 192, 294, 303, 450, 746, 765, 788
TasI	AATT	2 cut(s)	857, 865
TfiI	GAWTC	2 cut(s)	573, 910
Tru1I	TTAA	2 cut(s)	126, 657
Tru9I	TTAA	2 cut(s)	126, 657
TseFI	GTSAC	1 cut(s)	672
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	2 cut(s)	512, 665
Van91I	CCANNNNNTGG	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	4, 332
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	1 cut(s)	757
XhoI	CTCGAG	1 cut(s)	302
XspI	CTAG	3 cut(s)	527, 558, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.