Rmu_sc0011940.1_g000005

Belongs to the Frigida family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011940.1
Physical Location & Seq
Reverse (-)
17284 .. 20560
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011940.1_g000005.1.cds

Sequence Viewer

Length: 1407 bp
atggctagcggaagcggcgaagacgtgggagaccaagcagatgaagccatcaaccctcagcccaaccctaccaatccatcaaccgtcaaccgtgaattgttcaccacaacaattaacatggacggccaaaatctcaactcccccgagatactcccaacacaatctgtcgtggaaaatcaaatcgacacaagccgtcaagcatcggcgccgtttcgctccgcggcttcttcccgcgaaatttgttcgttttccggggaaggaagtaatgttttcgcgggaaggaaccggtggtgtgttattgtgcttcaatttcttgctgcaactaccgatcctttgaccatggaagatacacactcagtttctacgctcatagattctacaacctccaagatacaccagcttcagaaggcatttgctgaacttgagggtcaccgagcggtaaccctgaacttgaagtggaaagaacttgaagagcacttccatgggcttgagaagtccttaaagaggcgttttcatgagctggaaggacaagaaaaggagtttgaaactaggacagtggaagcgcaaagaatgctagaaaagcggcaagcagctgttgtcgccaaggaagaagctcaactggaaactcttcaagagaagagagatgctgccatatatgccatcactaatgctcgagagaagcaaaggaaggtatcgactgaggagtcttctgttgtcactgatgacggccgaggtgggtcaccaactgttgaagagaaaccaccagatgtgatggtttctgatagtaacttggaagaagtgacaagtcctgaaaatgggagcatagaagggatgtcctatccccagttagtgaactattgtgaacagatggactcagaaggcctccacaaatttatatcagataaccgaaagaaccttgctgcaataagggaggagattccacttgcatttagagctgcggccaaccctgccctctttgttttggaatctctggaagacttttaccgcctggaagggcccactatggatgtgaagaaggattccaacctgttgggtatccgtcgaacctgcataatgttgatggagtgtctgagcatattgttaacaaacccagagttagcctctgcttctgatattattacagaggaggttaaggatatggcagagatgattgctgaagaatggaagccaaagttggatgctcttgacatggatgctagcaatgggaactcactggaggctcatgcctttttgcagcttctagctacttttggtattgcttccggttttgatgaagaagaattgttcaggctaattccaatggtttcacgtcgtcgccaaacagctgacctttgccgttcacttggattgactgagagaatgccaggtttgttttttattttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

52.17

Weight (kDa)

4.74

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 703
Acc36I ACCTGC 1 cut(s) 1076
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 437
AccII CGCG 3 cut(s) 221, 234, 275
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 3 cut(s) 124, 727, 960
AcsI RAATTY 2 cut(s) 237, 890
AcuI CTGAAG 2 cut(s) 386, 1197
AcyI GRCGYC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 504, 815
AgeI ACCGGT 1 cut(s) 285
AgsI TTSAA 6 cut(s) 308, 454, 470, 545, 632, 752
AjiI CACGTC 2 cut(s) 25, 1331
AjnI CCWGG 2 cut(s) 1008, 1384
AjuI GAANNNNNNNTTGG 2 cut(s) 1178, 1210
AluBI AGCT 8 cut(s) 400, 520, 593, 614, 956, 1258, 1265, 1346
AluI AGCT 8 cut(s) 400, 520, 593, 614, 956, 1258, 1265, 1346
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 323
Ama87I CYCGRG 2 cut(s) 143, 672
AoxI GGCC 5 cut(s) 124, 727, 880, 960, 1016
ApaI GGGCCC 1 cut(s) 1020
ApeKI GCWGC 6 cut(s) 317, 590, 647, 920, 956, 1255
ApoI RAATTY 2 cut(s) 237, 890
AsiGI ACCGGT 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 2 cut(s) 208, 565
AspS9I GGNCC 2 cut(s) 1016, 1017
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 94, 422, 732
AsuNHI GCTAGC 2 cut(s) 5, 1217
AvaI CYCGRG 2 cut(s) 143, 672
BaeGI GKGCMC 1 cut(s) 1020
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 1020
BbsI GAAGAC 3 cut(s) 27, 699, 1002
Bbv12I GWGCWC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 6 cut(s) 304, 602, 634, 907, 943, 1267
BccI CCATC 6 cut(s) 56, 85, 668, 766, 862, 1075
BceAI ACGGC 5 cut(s) 139, 177, 193, 742, 1341
BciT130I CCWGG 2 cut(s) 1010, 1386
BciVI GTATCC 1 cut(s) 1067
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 5 cut(s) 6, 549, 575, 1218, 1262
BfoI RGCGCY 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 1076
BfuI GTATCC 1 cut(s) 1067
Bme1390I CCNGG 3 cut(s) 253, 1010, 1386
BmeT110I CYCGRG 2 cut(s) 143, 672
BmgBI CACGTC 2 cut(s) 25, 1331
BmgT120I GGNCC 2 cut(s) 1016, 1017
BmiI GGNNCC 3 cut(s) 207, 284, 1018
BmrFI CCNGG 3 cut(s) 253, 1010, 1386
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 4 cut(s) 209, 634, 1189, 1204
BmtI GCTAGC 2 cut(s) 9, 1221
BmuI ACTGGG 1 cut(s) 838
BpiI GAAGAC 3 cut(s) 27, 699, 1002
BplI GAGNNNNNCTC 2 cut(s) 1106, 1138
BpmI CTGGAG 1 cut(s) 1256
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 443, 509
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 6 cut(s) 219, 252, 339, 481, 603, 730
BsaWI WCCGGW 2 cut(s) 285, 1283
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 815
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 3 cut(s) 624, 844, 1239
Bse3DI GCAATG 1 cut(s) 1228
BseBI CCWGG 2 cut(s) 1010, 1386
BseDI CCNNGG 6 cut(s) 219, 252, 339, 481, 603, 730
BseGI GGATG 4 cut(s) 837, 1033, 1204, 1219
BseLI CCNNNNNNNGG 2 cut(s) 504, 815
BseMI GCAATG 1 cut(s) 1228
BseMII CTCAG 6 cut(s) 71, 369, 690, 888, 1082, 1365
BseNI ACTGG 3 cut(s) 624, 844, 1239
BseRI GAGGAG 3 cut(s) 716, 947, 1160
BseSI GKGCMC 1 cut(s) 1020
BseX3I CGGCCG 1 cut(s) 727
BseXI GCAGC 6 cut(s) 304, 602, 634, 907, 943, 1267
Bsh1236I CGCG 3 cut(s) 221, 234, 275
Bsh1285I CGRYCG 1 cut(s) 730
BshFI GGCC 5 cut(s) 126, 729, 882, 962, 1018
BshNI GGYRCC 1 cut(s) 205
BshTI ACCGGT 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 730
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 143, 672
BsiSI CCGG 3 cut(s) 252, 286, 1284
BslI CCNNNNNNNGG 2 cut(s) 504, 815
BsmAI GTCTC 1 cut(s) 24
BsmI GAATGC 2 cut(s) 576, 1386
BsnI GGCC 5 cut(s) 126, 729, 882, 962, 1018
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 2 cut(s) 143, 672
Bsp120I GGGCCC 1 cut(s) 1016
Bsp1286I GDGCHC 2 cut(s) 477, 1020
Bsp143I GATC 1 cut(s) 328
Bsp19I CCATGG 2 cut(s) 339, 481
BspANI GGCC 5 cut(s) 126, 729, 882, 962, 1018
BspCNI CTCAG 6 cut(s) 70, 368, 691, 887, 1083, 1366
BspFNI CGCG 3 cut(s) 221, 234, 275
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 3 cut(s) 207, 284, 1018
BspMI ACCTGC 1 cut(s) 1076
BspOI GCTAGC 2 cut(s) 9, 1221
BspPI GGATC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 24
BsrBI CCGCTC 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 1228
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 3 cut(s) 624, 844, 1239
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 6 cut(s) 219, 252, 339, 481, 603, 730
BssMI GATC 1 cut(s) 328
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 3 cut(s) 339, 481, 603
Bst2UI CCWGG 2 cut(s) 1010, 1386
Bst4CI ACNGT 4 cut(s) 85, 92, 556, 748
Bst6I CTCTTC 4 cut(s) 465, 632, 633, 747
BstACI GRCGYC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 571
BstC8I GCNNGC 3 cut(s) 7, 588, 1219
BstDEI CTNAG 6 cut(s) 57, 355, 699, 874, 1091, 1374
BstDSI CCRYGG 3 cut(s) 219, 339, 481
BstEII GGTNACC 3 cut(s) 428, 439, 738
BstENI CCTNNNNNAGG 1 cut(s) 502
BstF5I GGATG 4 cut(s) 837, 1033, 1204, 1219
BstFNI CGCG 3 cut(s) 221, 234, 275
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 2 cut(s) 208, 565
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 328
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 8 cut(s) 15, 44, 571, 580, 599, 656, 953, 968
BstNI CCWGG 2 cut(s) 1010, 1386
BstPI GGTNACC 3 cut(s) 428, 439, 738
BstSCI CCNGG 3 cut(s) 251, 1008, 1384
BstSLI GKGCMC 1 cut(s) 1020
BstUI CGCG 3 cut(s) 221, 234, 275
BstV1I GCAGC 6 cut(s) 304, 602, 634, 907, 943, 1267
BstV2I GAAGAC 3 cut(s) 27, 699, 1002
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstZI CGGCCG 1 cut(s) 727
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 5 cut(s) 126, 729, 882, 962, 1018
BtgI CCRYGG 3 cut(s) 219, 339, 481
BtrI CACGTC 2 cut(s) 25, 1331
BtsCI GGATG 4 cut(s) 837, 1033, 1204, 1219
BtsIMutI CAGTG 3 cut(s) 561, 717, 1232
BveI ACCTGC 1 cut(s) 1076
Cac8I GCNNGC 3 cut(s) 7, 588, 1219
CciI TCATGA 1 cut(s) 514
CfoI GCGC 2 cut(s) 208, 565
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 1016, 1017
Cfr42I CCGCGG 1 cut(s) 222
CspAI ACCGGT 1 cut(s) 285
CviAII CATG 6 cut(s) 118, 340, 482, 515, 1210, 1244
DdeI CTNAG 6 cut(s) 57, 355, 699, 874, 1091, 1374
DinI GGCGCC 1 cut(s) 207
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 3 cut(s) 124, 727, 960
EagI CGGCCG 1 cut(s) 727
Eam1104I CTCTTC 4 cut(s) 465, 632, 633, 747
EarI CTCTTC 4 cut(s) 465, 632, 633, 747
EclXI CGGCCG 1 cut(s) 727
Eco130I CCWWGG 3 cut(s) 339, 481, 603
Eco147I AGGCCT 1 cut(s) 882
Eco24I GRGCYC 1 cut(s) 1020
Eco31I GGTCTC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 727
Eco57I CTGAAG 2 cut(s) 386, 1197
Eco88I CYCGRG 2 cut(s) 143, 672
Eco91I GGTNACC 3 cut(s) 428, 439, 738
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 1016
EcoO65I GGTNACC 3 cut(s) 428, 439, 738
EcoRII CCWGG 2 cut(s) 1008, 1384
EcoT14I CCWWGG 3 cut(s) 339, 481, 603
EcoT38I GRGCYC 1 cut(s) 1020
EgeI GGCGCC 1 cut(s) 207
EheI GGCGCC 1 cut(s) 207
ErhI CCWWGG 3 cut(s) 339, 481, 603
FaeI CATG 6 cut(s) 121, 343, 485, 518, 1213, 1247
FatI CATG 6 cut(s) 117, 339, 481, 514, 1209, 1243
FauI CCCGC 2 cut(s) 239, 268
FokI GGATG 4 cut(s) 844, 1040, 1211, 1226
FriOI GRGCYC 1 cut(s) 1020
FspBI CTAG 5 cut(s) 6, 549, 575, 1218, 1262
GlaI GCGC 2 cut(s) 207, 564
GsuI CTGGAG 1 cut(s) 1256
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 5 cut(s) 126, 729, 882, 962, 1018
HapII CCGG 3 cut(s) 252, 286, 1284
HhaI GCGC 2 cut(s) 208, 565
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 6 cut(s) 121, 343, 485, 518, 1213, 1247
Hin6I GCGC 2 cut(s) 206, 563
HinP1I GCGC 2 cut(s) 206, 563
HincII GTYRAC 2 cut(s) 88, 1104
HindII GTYRAC 2 cut(s) 88, 1104
HinfI GANTC 6 cut(s) 374, 704, 872, 937, 986, 1040
HpaI GTTAAC 1 cut(s) 1104
HpaII CCGG 3 cut(s) 252, 286, 1284
HphI GGTGA 3 cut(s) 94, 422, 732
Hpy166II GTNNAC 6 cut(s) 88, 102, 853, 863, 1104, 1361
Hpy188I TCNGA 7 cut(s) 405, 781, 877, 901, 1092, 1132, 1406
Hpy188III TCNNGA 6 cut(s) 515, 632, 674, 809, 992, 1205
Hpy8I GTNNAC 6 cut(s) 88, 102, 853, 863, 1104, 1361
Hpy99I CGWCG 3 cut(s) 1065, 1335, 1338
HpyAV CCTTC 9 cut(s) 251, 273, 400, 518, 682, 821, 872, 1007, 1030
HpyCH4III ACNGT 4 cut(s) 85, 92, 556, 748
HpyCH4IV ACGT 2 cut(s) 24, 1330
HpyCH4V TGCA 5 cut(s) 320, 923, 947, 1071, 1255
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 44, 571, 580, 599, 656, 953, 968
HpyF3I CTNAG 6 cut(s) 57, 355, 699, 874, 1091, 1374
HpySE526I ACGT 2 cut(s) 24, 1330
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 6 cut(s) 121, 343, 485, 518, 1213, 1247
HspAI GCGC 2 cut(s) 206, 563
KasI GGCGCC 1 cut(s) 205
KspAI GTTAAC 1 cut(s) 1104
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 328
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 2 cut(s) 221, 819
Lsp1109I GCAGC 6 cut(s) 304, 602, 634, 907, 943, 1267
LweI GCATC 4 cut(s) 209, 634, 1189, 1204
MaeI CTAG 5 cut(s) 6, 549, 575, 1218, 1262
MaeII ACGT 2 cut(s) 24, 1330
MaeIII GTNAC 6 cut(s) 428, 439, 715, 738, 785, 799
MalI GATC 1 cut(s) 330
MbiI CCGCTC 1 cut(s) 437
MboI GATC 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 477, 1020
MluCI AATT 7 cut(s) 95, 111, 237, 308, 890, 1301, 1314
Mly113I GGCGCC 1 cut(s) 206
MlyI GAGTC 2 cut(s) 713, 866
MmeI TCCRAC 2 cut(s) 1068, 1176
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 4 cut(s) 114, 500, 1103, 1152
MslI CAYNNNNRTG 1 cut(s) 480
MspA1I CMGCKG 3 cut(s) 221, 593, 1346
MspI CCGG 3 cut(s) 252, 286, 1284
MspR9I CCNGG 3 cut(s) 253, 1010, 1386
Mva1269I GAATGC 2 cut(s) 576, 1386
MvaI CCWGG 2 cut(s) 1010, 1386
MvnI CGCG 3 cut(s) 221, 234, 275
MwoI GCNNNNNNNGC 8 cut(s) 15, 44, 571, 580, 599, 656, 953, 968
NarI GGCGCC 1 cut(s) 206
NciI CCSGG 1 cut(s) 253
NcoI CCATGG 2 cut(s) 339, 481
NdeII GATC 1 cut(s) 328
NheI GCTAGC 2 cut(s) 5, 1217
NlaIII CATG 6 cut(s) 121, 343, 485, 518, 1213, 1247
NlaIV GGNNCC 3 cut(s) 207, 284, 1018
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 4 cut(s) 428, 715, 738, 799
PaeR7I CTCGAG 1 cut(s) 672
PagI TCATGA 1 cut(s) 514
PceI AGGCCT 1 cut(s) 882
PciSI GCTCTTC 1 cut(s) 465
PctI GAATGC 2 cut(s) 576, 1386
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 374, 937, 986, 1040
PinAI ACCGGT 1 cut(s) 285
PleI GAGTC 2 cut(s) 712, 866
PluTI GGCGCC 1 cut(s) 209
PpsI GAGTC 2 cut(s) 712, 866
Psp6I CCWGG 2 cut(s) 1008, 1384
PspEI GGTNACC 3 cut(s) 428, 439, 738
PspGI CCWGG 2 cut(s) 1008, 1384
PspN4I GGNNCC 3 cut(s) 207, 284, 1018
PspOMI GGGCCC 1 cut(s) 1016
PspPI GGNCC 2 cut(s) 1016, 1017
PvuII CAGCTG 2 cut(s) 593, 1346
RseI CAYNNNNRTG 1 cut(s) 480
SacII CCGCGG 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 4 cut(s) 114, 500, 1103, 1152
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 2 cut(s) 1016, 1017
SchI GAGTC 2 cut(s) 713, 866
ScrFI CCNGG 3 cut(s) 253, 1010, 1386
SduI GDGCHC 2 cut(s) 477, 1020
SfaNI GCATC 4 cut(s) 209, 634, 1189, 1204
SfoI GGCGCC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 672
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 3 cut(s) 422, 488, 672
SmoI CTYRAG 3 cut(s) 422, 488, 672
Sse9I AATT 7 cut(s) 95, 111, 237, 308, 890, 1301, 1314
SseBI AGGCCT 1 cut(s) 882
SspDI GGCGCC 1 cut(s) 205
SspMI CTAG 5 cut(s) 6, 549, 575, 1218, 1262
StuI AGGCCT 1 cut(s) 882
StyD4I CCNGG 3 cut(s) 251, 1008, 1384
StyI CCWWGG 3 cut(s) 339, 481, 603
TaaI ACNGT 4 cut(s) 85, 92, 556, 748
TaiI ACGT 2 cut(s) 27, 1333
TaqI TCGA 4 cut(s) 183, 673, 695, 1063
TasI AATT 7 cut(s) 95, 111, 237, 308, 890, 1301, 1314
TauI GCSGC 4 cut(s) 18, 224, 586, 962
TfiI GAWTC 4 cut(s) 374, 937, 986, 1040
Tru1I TTAA 4 cut(s) 114, 500, 1103, 1152
Tru9I TTAA 4 cut(s) 114, 500, 1103, 1152
TscAI CASTG 3 cut(s) 561, 724, 1239
TseFI GTSAC 4 cut(s) 428, 715, 738, 799
TseI GCWGC 6 cut(s) 317, 590, 647, 920, 956, 1255
Tsp45I GTSAC 4 cut(s) 428, 715, 738, 799
TspDTI ATGAA 3 cut(s) 57, 503, 1308
TspGWI ACGGA 1 cut(s) 1049
TspRI CASTG 3 cut(s) 561, 724, 1239
XagI CCTNNNNNAGG 1 cut(s) 502
XapI RAATTY 2 cut(s) 237, 890
XhoI CTCGAG 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 5 cut(s) 6, 549, 575, 1218, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.