Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005822

Physical Location & Seq

Genomic Coordinates Reverse (-)

20840077 .. 20840622

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0145900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACAGGTTCACAAGGAAACAAAGGACTAAGACTTAAACCATTCATTCATTATGATAGTTTGGTGGAAACTTTTGGGAGAGATAGAGCCAATGGGTTAGGAGCTGAAGGACCTGCTGAAGCGGATGATATTTTGAATAATGATAATGAATTTGTTGATCTCGAAGGAGATGGTTTGCCTGAAAATATTGTTCCTACACCTGCTACTCGTACAACTTCTTCCGCTTCTAATTCAACTCGGACTAGAAAGCGAGCAAGGGACGCTTATGCTCAATGCTTGGGAGACATGGCTAGCACACTCCGCTCCTTTGTGGATGTGACCAAGACACACTTGGAGACTATGAAAGAAGTACTTTTGAATGACCATGCAACATCTACAAAAAGAGGTAAACTTGTCGAAGAGCTTATGAAAATTGAAGATTTGAATGATTATGATGTGCTAGAGGCTGCTGCTACAATTATTGGCGATGACTCCAAAATTGAGCTCTTGTTCAGCTTACCTGACAATTTAAAGAGCCAATGGATTTACAAGCTTCTTAACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

4.92

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48385
fragaria_vesca	FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450
malus_domestica	MD05G1153400.v1.1 MD10G1147800.v1.1
prunus_persica	Prupe.8G186800_v2.0.a1 Prupe.8G186800_v2.0.a1
pyrus_communis	pycom05g14780 pycom10g12790
rosa_chinensis	RchiOBHm_Chr6g0282181
rosa_laevigata	RLG00000012904
rosa_multiflora	Rmu_sc0011940.1_g000005 Rmu_sc0011940.1_g000006 Rmu_sc0014549.1_g000009 Rmu_sc0021471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186420
rosa_rugosa	Rorug06G0145900 Rorug06G0146000
rosa_samantha	Rh6AG259100 Rh6BG262400 Rh6CG261300 Rh6DG253400
rosa_wichuraiana	Rw6G022410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	208
Acc36I	ACCTGC	2 cut(s)	121, 208
AccBSI	CCGCTC	1 cut(s)	303
AciI	CCGC	3 cut(s)	122, 222, 301
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	2 cut(s)	126, 138
AfaI	GTAC	2 cut(s)	211, 351
AgsI	TTSAA	5 cut(s)	136, 234, 358, 416, 424
AluBI	AGCT	5 cut(s)	104, 403, 484, 495, 532
AluI	AGCT	5 cut(s)	104, 403, 484, 495, 532
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	276, 329
ApeKI	GCWGC	2 cut(s)	446, 449
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	110
AsuNHI	GCTAGC	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	2 cut(s)	202, 234
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	433, 436
BccI	CCATC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	276, 329
BfaI	CTAG	4 cut(s)	243, 291, 440, 544
BfuAI	ACCTGC	2 cut(s)	121, 208
BisI	GCNGC	2 cut(s)	447, 450
BlsI	GCNGC	2 cut(s)	448, 451
BmcAI	AGTACT	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmtI	GCTAGC	1 cut(s)	294
BseGI	GGATG	2 cut(s)	130, 319
BseXI	GCAGC	2 cut(s)	433, 436
BsiHKAI	GWGCWC	1 cut(s)	486
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	276, 329
BsmFI	GGGAC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	3 cut(s)	122, 222, 301
BspMI	ACCTGC	2 cut(s)	121, 208
BspOI	GCTAGC	1 cut(s)	294
BspQI	GCTCTTC	1 cut(s)	393
BsrBI	CCGCTC	1 cut(s)	303
BssMI	GATC	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	252, 292
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	130, 319
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	276, 329
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 300
BstV1I	GCAGC	2 cut(s)	433, 436
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	130, 319
BveI	ACCTGC	2 cut(s)	121, 208
Cac8I	GCNNGC	2 cut(s)	252, 292
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	210, 350
CviAII	CATG	2 cut(s)	286, 365
CviJI	RGCY	9 cut(s)	89, 104, 290, 403, 446, 484, 495, 516, 532
CviKI_1	RGCY	9 cut(s)	89, 104, 290, 403, 446, 484, 495, 516, 532
CviQI	GTAC	2 cut(s)	210, 350
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	126, 138
EcoICRI	GAGCTC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	2 cut(s)	289, 368
FaiI	YATR	7 cut(s)	54, 267, 287, 341, 366, 407, 432
FalI	AAGNNNNNCTT	6 cut(s)	247, 279, 314, 346, 336, 368
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	285, 364
Fnu4HI	GCNGC	2 cut(s)	447, 450
FokI	GGATG	2 cut(s)	137, 326
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	447, 450
FspBI	CTAG	4 cut(s)	243, 291, 440, 544
GluI	GCNGC	2 cut(s)	447, 450
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	289, 368
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	11, 389
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	2 cut(s)	11, 389
HpyAV	CCTTC	2 cut(s)	101, 158
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 300
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	289, 368
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	101, 308
LpnPI	CCDG	4 cut(s)	126, 192, 213, 513
Lsp1109I	GCAGC	2 cut(s)	433, 436
MaeI	CTAG	4 cut(s)	243, 291, 440, 544
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	210, 410, 428
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	6 cut(s)	149, 229, 411, 456, 477, 505
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	2 cut(s)	377, 436
MseI	TTAA	3 cut(s)	36, 509, 537
MwoI	GCNNNNNNNGC	2 cut(s)	260, 300
NdeII	GATC	1 cut(s)	157
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	289, 368
NmuCI	GTSAC	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	448, 451
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PpuMI	RGGWCCY	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	110
PspPPI	RGGWCCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	211, 351
RsaNI	GTAC	2 cut(s)	210, 350
SacI	GAGCTC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	36, 509, 537
SatI	GCNGC	2 cut(s)	447, 450
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	110
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	1 cut(s)	464
SduI	GDGCHC	1 cut(s)	486
SinI	GGWCC	1 cut(s)	110
Sse9I	AATT	6 cut(s)	149, 229, 411, 456, 477, 505
SsiI	CCGC	3 cut(s)	122, 222, 301
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	4 cut(s)	243, 291, 440, 544
SstI	GAGCTC	1 cut(s)	486
TaqI	TCGA	2 cut(s)	162, 396
TasI	AATT	6 cut(s)	149, 229, 411, 456, 477, 505
TatI	WGTACW	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	36, 509, 537
Tru9I	TTAA	3 cut(s)	36, 509, 537
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	2 cut(s)	446, 449
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	5 cut(s)	34, 38, 162, 356, 422
VpaK11BI	GGWCC	1 cut(s)	110
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XspI	CTAG	4 cut(s)	243, 291, 440, 544
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.