Rh6AG259100

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005822
Physical Location & Seq
Forward (+)
45050369 .. 45055052
4684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG259100.1

Sequence Viewer

Length: 1233 bp
ATGGAAGATACACACTCAGTTTCTACGCTCATAGATTCTACAACCTCCAAGATACACCAGCTTCAGAAGGCATTTGCTGAACTTGAGGGTCACCGAGCGGTAACCCTGAACTTGAAGTGGAAAGAACTTGAAGAGCACTTCCATGGGCTTGAGAAGTCCTTAAAGAGGCGTTTTCATGAGCTGGAAGGACAAGAAAAGGAGTTTGAAACTAGGACAGTGGAAGCGCAAAGAATGCTAGAAAAGCGGCAAGCAGCTGTTGTCGCCAAGGAAGAAGCTCAACTGGAAACTCTTCAAGAGAAGAGAGATGCTGCCATATATGCCATCACTAATGCTCGAGAGAAGCAAAGGAAGGTATCGACTGAGGAGTCTTCTGTTGTCACTGATGACGGCCGAGGTGGGTCACCAACTGTTGAAGAGAAACCACCAGATGTGATGGTTTCTGATAGTAACTTGGAAGAAGTGACAAGTCCTGAAAATGGGAGCATAGAAGGGATGTCCTATCCCCAGTTAGTGAACTATTGTGAACAGATGGACTCAGAAGGCCTCCACAAATTTATATCAGATAACCGAAAGAACCTTGCTGCAATAAGGGAGGAGATTCCACTTGCATTTAGAGCTGCGGCCAACCCTGCCCTCTTTGTTTTGGAATCTCTGGAAGACTTTTACCGCCTGGAAGGGCCCACTATGGATGTGAAGAAGGATTCCAACCTGTTGGGTATCCGTCGAACCTGCATAATGTTGATGGAGTGTCTGAGCATATTGTTAACAAACCCAGAGTTAGCCTCTGCTTCTGATATTATTACAGAGGAGGTTAAGGATATGGCAGAGATGATTGCTGAAGAATGGAAGCCAAAGTTGGATGCTCTTGACATGGATGCTAGCAATGGGAACTCACTGGAGGCTCATGCCTTTTTGCAGCTTCTAGCTACTTTTGGTATTGCTTCCGGTTTTGATGAAGAAGAATTGTTCAGGCTAATTCCAATGGTTTCACGTCGTCGCCAAACAGCTGACCTTTGCCGTTCACTTGGATTGACTGAGAGAATGCCAGGTGTTATTGAAGTATTAGTGAACAGTGGAAGACAAATTGATGCAGTTAACCTGGCTTTTGCATTCGAACTGACAGAGCAGTTCTCTCCCATGCCTTTGCTAAAGTCCTACTTGAAGGAGGCAAAAAAAGCTTCTTCACCAGTCAAACCTGGGAATGCATCTCCTACTGCACAGGTGTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

410

Amino Acids

45.93

Weight (kDa)

4.94

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 166 - 407 2.7e-86 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 4 cut(s) 98, 244, 620, 667
AcoI YGGCCR 2 cut(s) 388, 621
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 2 cut(s) 47, 858
AfiI CCNNNNNNNGG 2 cut(s) 165, 476
AgsI TTSAA 7 cut(s) 115, 131, 206, 293, 413, 1058, 1162
AjiI CACGTC 1 cut(s) 992
AjnI CCWGG 4 cut(s) 669, 1045, 1098, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AleI CACNNNNGTG 1 cut(s) 1222
AluBI AGCT 9 cut(s) 61, 181, 254, 275, 617, 919, 926, 1007, 1178
AluI AGCT 9 cut(s) 61, 181, 254, 275, 617, 919, 926, 1007, 1178
Alw21I GWGCWC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 4 cut(s) 388, 541, 621, 677
ApaI GGGCCC 1 cut(s) 681
ApeKI GCWGC 5 cut(s) 251, 308, 581, 617, 916
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 288
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 677, 678
AsuHPI GGTGA 3 cut(s) 83, 393, 1176
AsuII TTCGAA 1 cut(s) 1113
AsuNHI GCTAGC 1 cut(s) 878
AvaI CYCGRG 1 cut(s) 333
BaeGI GKGCMC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 681
BbsI GAAGAC 3 cut(s) 360, 663, 1084
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 5 cut(s) 263, 295, 568, 604, 928
BccI CCATC 4 cut(s) 329, 427, 523, 736
BceAI ACGGC 2 cut(s) 403, 1002
BciT130I CCWGG 4 cut(s) 671, 1047, 1100, 1197
BciVI GTATCC 1 cut(s) 728
BfaI CTAG 4 cut(s) 210, 236, 879, 923
BfuAI ACCTGC 1 cut(s) 737
BfuI GTATCC 1 cut(s) 728
BisI GCNGC 7 cut(s) 245, 252, 309, 582, 618, 621, 917
BlsI GCNGC 7 cut(s) 246, 253, 310, 583, 619, 622, 918
Bme1390I CCNGG 4 cut(s) 671, 1047, 1100, 1197
BmeT110I CYCGRG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 992
BmgT120I GGNCC 2 cut(s) 677, 678
BmiI GGNNCC 1 cut(s) 679
BmrFI CCNGG 4 cut(s) 671, 1047, 1100, 1197
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 5 cut(s) 295, 850, 865, 1078, 1214
BmtI GCTAGC 1 cut(s) 882
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 3 cut(s) 360, 663, 1084
BplI GAGNNNNNCTC 4 cut(s) 767, 799, 1115, 1147
BpmI CTGGAG 1 cut(s) 917
Bpu14I TTCGAA 1 cut(s) 1113
BpuEI CTTGAG 2 cut(s) 104, 170
BsaJI CCNNGG 4 cut(s) 142, 264, 391, 1196
BsaWI WCCGGW 1 cut(s) 944
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 476
Bse1I ACTGG 4 cut(s) 285, 505, 900, 1187
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 4 cut(s) 671, 1047, 1100, 1197
BseDI CCNNGG 4 cut(s) 142, 264, 391, 1196
BseGI GGATG 4 cut(s) 498, 694, 865, 880
BseLI CCNNNNNNNGG 2 cut(s) 165, 476
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 5 cut(s) 30, 351, 549, 743, 1026
BseNI ACTGG 4 cut(s) 285, 505, 900, 1187
BseRI GAGGAG 3 cut(s) 377, 608, 821
BseSI GKGCMC 1 cut(s) 681
BseX3I CGGCCG 1 cut(s) 388
BseXI GCAGC 5 cut(s) 263, 295, 568, 604, 928
BsgI GTGCAG 1 cut(s) 1200
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 4 cut(s) 390, 543, 623, 679
BsiEI CGRYCG 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 945
BslI CCNNNNNNNGG 2 cut(s) 165, 476
BsmI GAATGC 4 cut(s) 237, 1047, 1109, 1207
BsnI GGCC 4 cut(s) 390, 543, 623, 679
BsoBI CYCGRG 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 1113
Bsp120I GGGCCC 1 cut(s) 677
Bsp1286I GDGCHC 2 cut(s) 138, 681
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 4 cut(s) 98, 244, 620, 667
BspANI GGCC 4 cut(s) 390, 543, 623, 679
BspCNI CTCAG 5 cut(s) 29, 352, 548, 744, 1027
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 737
BspOI GCTAGC 1 cut(s) 882
BspQI GCTCTTC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 1113
BsrBI CCGCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 889
BsrI ACTGG 4 cut(s) 285, 505, 900, 1187
BssECI CCNNGG 4 cut(s) 142, 264, 391, 1196
BssT1I CCWWGG 2 cut(s) 142, 264
Bst2UI CCWGG 4 cut(s) 671, 1047, 1100, 1197
Bst4CI ACNGT 3 cut(s) 217, 409, 1073
Bst6I CTCTTC 4 cut(s) 126, 293, 294, 408
BstAPI GCANNNNNTGC 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 2 cut(s) 249, 880
BstDEI CTNAG 5 cut(s) 16, 360, 535, 752, 1035
BstDSI CCRYGG 1 cut(s) 142
BstEII GGTNACC 3 cut(s) 89, 100, 399
BstENI CCTNNNNNAGG 1 cut(s) 163
BstF5I GGATG 4 cut(s) 498, 694, 865, 880
BstHHI GCGC 1 cut(s) 226
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 7 cut(s) 232, 241, 260, 317, 614, 629, 1175
BstNI CCWGG 4 cut(s) 671, 1047, 1100, 1197
BstPI GGTNACC 3 cut(s) 89, 100, 399
BstSCI CCNGG 4 cut(s) 669, 1045, 1098, 1195
BstSLI GKGCMC 1 cut(s) 681
BstV1I GCAGC 5 cut(s) 263, 295, 568, 604, 928
BstV2I GAAGAC 3 cut(s) 360, 663, 1084
BstXI CCANNNNNNTGG 1 cut(s) 712
BstZI CGGCCG 1 cut(s) 388
BsuI GTATCC 1 cut(s) 728
BsuRI GGCC 4 cut(s) 390, 543, 623, 679
BtgI CCRYGG 1 cut(s) 142
BtrI CACGTC 1 cut(s) 992
BtsCI GGATG 4 cut(s) 498, 694, 865, 880
BtsIMutI CAGTG 4 cut(s) 222, 378, 893, 1078
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 2 cut(s) 249, 880
CciI TCATGA 1 cut(s) 175
CfoI GCGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 677, 678
CviAII CATG 5 cut(s) 143, 176, 871, 905, 1138
DdeI CTNAG 5 cut(s) 16, 360, 535, 752, 1035
DrdI GACNNNNNNGTC 1 cut(s) 364
DseDI GACNNNNNNGTC 1 cut(s) 364
EaeI YGGCCR 2 cut(s) 388, 621
EagI CGGCCG 1 cut(s) 388
Eam1104I CTCTTC 4 cut(s) 126, 293, 294, 408
EarI CTCTTC 4 cut(s) 126, 293, 294, 408
EclXI CGGCCG 1 cut(s) 388
Eco130I CCWWGG 2 cut(s) 142, 264
Eco147I AGGCCT 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 681
Eco52I CGGCCG 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 47, 858
Eco88I CYCGRG 1 cut(s) 333
Eco91I GGTNACC 3 cut(s) 89, 100, 399
EcoNI CCTNNNNNAGG 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 677
EcoO65I GGTNACC 3 cut(s) 89, 100, 399
EcoRII CCWGG 4 cut(s) 669, 1045, 1098, 1195
EcoT14I CCWWGG 2 cut(s) 142, 264
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 2 cut(s) 142, 264
FaeI CATG 5 cut(s) 146, 179, 874, 908, 1141
FalI AAGNNNNNCTT 2 cut(s) 1142, 1174
FatI CATG 5 cut(s) 142, 175, 870, 904, 1137
Fnu4HI GCNGC 7 cut(s) 245, 252, 309, 582, 618, 621, 917
FokI GGATG 4 cut(s) 505, 701, 872, 887
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 7 cut(s) 245, 252, 309, 582, 618, 621, 917
FspBI CTAG 4 cut(s) 210, 236, 879, 923
GlaI GCGC 1 cut(s) 225
GluI GCNGC 7 cut(s) 245, 252, 309, 582, 618, 621, 917
GsuI CTGGAG 1 cut(s) 917
HaeIII GGCC 4 cut(s) 390, 543, 623, 679
HapII CCGG 1 cut(s) 945
HhaI GCGC 1 cut(s) 226
Hin1II CATG 5 cut(s) 146, 179, 874, 908, 1141
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 2 cut(s) 765, 1096
HindII GTYRAC 2 cut(s) 765, 1096
HindIII AAGCTT 1 cut(s) 1176
HinfI GANTC 6 cut(s) 35, 365, 533, 598, 647, 701
HpaI GTTAAC 2 cut(s) 765, 1096
HpaII CCGG 1 cut(s) 945
HphI GGTGA 3 cut(s) 83, 393, 1176
Hpy166II GTNNAC 6 cut(s) 514, 524, 765, 1022, 1069, 1096
Hpy188I TCNGA 6 cut(s) 66, 442, 538, 562, 753, 793
Hpy188III TCNNGA 6 cut(s) 176, 293, 335, 470, 653, 866
Hpy8I GTNNAC 6 cut(s) 514, 524, 765, 1022, 1069, 1096
Hpy99I CGWCG 3 cut(s) 726, 996, 999
HpyAV CCTTC 8 cut(s) 61, 179, 343, 482, 533, 668, 691, 1156
HpyCH4III ACNGT 3 cut(s) 217, 409, 1073
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 8 cut(s) 584, 608, 732, 916, 1091, 1109, 1205, 1217
HpyF10VI GCNNNNNNNGC 7 cut(s) 232, 241, 260, 317, 614, 629, 1175
HpyF3I CTNAG 5 cut(s) 16, 360, 535, 752, 1035
HpySE526I ACGT 1 cut(s) 991
Hsp92II CATG 5 cut(s) 146, 179, 874, 908, 1141
HspAI GCGC 1 cut(s) 224
KspAI GTTAAC 2 cut(s) 765, 1096
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 5 cut(s) 263, 295, 568, 604, 928
LweI GCATC 5 cut(s) 295, 850, 865, 1078, 1214
MaeI CTAG 4 cut(s) 210, 236, 879, 923
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 6 cut(s) 89, 100, 376, 399, 446, 460
MbiI CCGCTC 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 138, 681
MluCI AATT 4 cut(s) 551, 962, 975, 1083
MlyI GAGTC 2 cut(s) 374, 527
MmeI TCCRAC 2 cut(s) 729, 837
Mph1103I ATGCAT 1 cut(s) 1207
MroXI GAANNNNTTC 1 cut(s) 288
MseI TTAA 4 cut(s) 161, 764, 813, 1095
MslI CAYNNNNRTG 2 cut(s) 141, 1222
MspA1I CMGCKG 2 cut(s) 254, 1007
MspI CCGG 1 cut(s) 945
MspR9I CCNGG 4 cut(s) 671, 1047, 1100, 1197
Mva1269I GAATGC 4 cut(s) 237, 1047, 1109, 1207
MvaI CCWGG 4 cut(s) 671, 1047, 1100, 1197
MwoI GCNNNNNNNGC 7 cut(s) 232, 241, 260, 317, 614, 629, 1175
NcoI CCATGG 1 cut(s) 142
NheI GCTAGC 1 cut(s) 878
NlaIII CATG 5 cut(s) 146, 179, 874, 908, 1141
NlaIV GGNNCC 1 cut(s) 679
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 4 cut(s) 89, 376, 399, 460
NsiI ATGCAT 1 cut(s) 1207
NspV TTCGAA 1 cut(s) 1113
OliI CACNNNNGTG 1 cut(s) 1222
PaeR7I CTCGAG 1 cut(s) 333
PagI TCATGA 1 cut(s) 175
PceI AGGCCT 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 4 cut(s) 237, 1047, 1109, 1207
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 4 cut(s) 35, 598, 647, 701
PkrI GCNGC 7 cut(s) 246, 253, 310, 583, 619, 622, 918
PleI GAGTC 2 cut(s) 373, 527
PpsI GAGTC 2 cut(s) 373, 527
Psp6I CCWGG 4 cut(s) 669, 1045, 1098, 1195
PspEI GGTNACC 3 cut(s) 89, 100, 399
PspGI CCWGG 4 cut(s) 669, 1045, 1098, 1195
PspN4I GGNNCC 1 cut(s) 679
PspOMI GGGCCC 1 cut(s) 677
PspPI GGNCC 2 cut(s) 677, 678
PvuII CAGCTG 2 cut(s) 254, 1007
RseI CAYNNNNRTG 2 cut(s) 141, 1222
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 4 cut(s) 161, 764, 813, 1095
SatI GCNGC 7 cut(s) 245, 252, 309, 582, 618, 621, 917
Sau96I GGNCC 2 cut(s) 677, 678
SchI GAGTC 2 cut(s) 374, 527
ScrFI CCNGG 4 cut(s) 671, 1047, 1100, 1197
SduI GDGCHC 2 cut(s) 138, 681
SfaNI GCATC 5 cut(s) 295, 850, 865, 1078, 1214
Sfr274I CTCGAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 1113
SlaI CTCGAG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 141, 1222
SmlI CTYRAG 3 cut(s) 83, 149, 333
SmoI CTYRAG 3 cut(s) 83, 149, 333
Sse9I AATT 4 cut(s) 551, 962, 975, 1083
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 4 cut(s) 98, 244, 620, 667
SspMI CTAG 4 cut(s) 210, 236, 879, 923
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 4 cut(s) 669, 1045, 1098, 1195
StyI CCWWGG 2 cut(s) 142, 264
TaaI ACNGT 3 cut(s) 217, 409, 1073
TaiI ACGT 1 cut(s) 994
TaqI TCGA 4 cut(s) 334, 356, 724, 1113
TasI AATT 4 cut(s) 551, 962, 975, 1083
TauI GCSGC 2 cut(s) 247, 623
TfiI GAWTC 4 cut(s) 35, 598, 647, 701
Tru1I TTAA 4 cut(s) 161, 764, 813, 1095
Tru9I TTAA 4 cut(s) 161, 764, 813, 1095
TscAI CASTG 4 cut(s) 222, 385, 900, 1078
TseFI GTSAC 4 cut(s) 89, 376, 399, 460
TseI GCWGC 5 cut(s) 251, 308, 581, 617, 916
Tsp45I GTSAC 4 cut(s) 89, 376, 399, 460
TspDTI ATGAA 2 cut(s) 164, 969
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 4 cut(s) 222, 385, 900, 1078
XagI CCTNNNNNAGG 1 cut(s) 163
XapI RAATTY 1 cut(s) 551
XhoI CTCGAG 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 4 cut(s) 210, 236, 879, 923
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.