Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011940.1

Orthogroup ID

OG0005822

Physical Location & Seq

Genomic Coordinates Forward (+)

22484 .. 28945

Gene Structure 6462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011940.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

atggctagcggaagcggcgaagacgtgggagaccaagcagatgaagccatcaaccctcagcccaaccctaccaatccatcaaccgtcaaccgtgaattgttcaccacaacaattaacatggacggccaaaatctcaactcccccgagatactcccaacacaatctgtcgtggaaaatcaaatcgacacaagccgtcaagccccggcaggtggaatatcctccacagccactcctcttttcaccacaaaccctcccgcggcccaagcccacttcatttctccacaccctctccctctggccacatcggcgccgtttcgctccgcggcttcttcccgcgaaatttgttcgttttccggggaaggaagaaatgttttcgcgggaaggaaccggtggtgtgttattgtgcttcaatttcttgctgcaactaccgatcctttgaccatggaagatacacactcagtttctacgctcatagattctacaacctccaagatacaccagcttcagaaggcatttgctgaacttgagggtcaccgagcggtaaccctgaacttgaagtggaaagaacttgaagagcacttccatgggcttgagaagtccttaaagaggcgttttcatgagctggaaggacaagaaaaggagtttgaaactaggacagtggaagcgcaaagaatgctagaaaagcggcaagcagctgttgtcgccaaggaagaagctcaactggaaactcttcaagagaagagagatgctgccatatatgccatcactaatgctcgagagaagcaaaggaaggtatcgactgaggagtcttctgttgtcactgatgacggccgaggtgggtcaccaactgttgaagagaaaccaccagatgtgatggtttctgatagtaacttggaagaagtgacaagtcctgaaaatgggagcatagaagggatgtcctatccccagttagtgaactattgtgaacagatggactcagaaggcctccacaaatttatatcagataaccgaaagaaccttgctgcaataagggaggagattccacttgcatttagagctgcggccaaccctgccctctttgttttggaatctctggaagacttttaccgcctggaagggcccactatggatgtgaagaaggattccaacctgttgggtatccgtcgaacctgcataatgttgatggagtgtctgagcatattgttaacaaacccagagttagcctctgcttctgatattattacagaggaggttaaggatatggcagagatgattgctgaagaatggaagccaaagttggatgctcttgacatggatgctagcaatgggaactcactggaggctcatgcctttttgcagcttctagctacttttggtattgcttccggttttgatgaagaagaattgttcaggctaattccaatggtttcacgtcgtcgccaaacagctgacctttgccgttcacttggattgactgagagaatgccaggtgttattgaagtattagtgaacagtggaagacaaattgatgcagttaacctggcttttgcattcgaactgacagagcagttctctcctgtgcctttgctaaagtcctacttgaaggaggcaaaaaaagcttcttcaccagtcaaacctgggaatgcatctcctactgcacagggatcaaaagtgagggctagggtggtgtcggagcttgtatctgatgatagagtggtggctctcttctccggtgaggcagctgcgaagcagaggactgcaatgcattctgtgctttggaattgtgctgctgatcatttccggctaaaggattatgtaacaagtgcagacctgtttgagaaagcaatgctttatattccattcgacatagagaatcgaattctccgagccaagggcttcagagttttgtgtctctgccacctaggtctttcccaccttgatcaagctcaagaatacattaacgaggctgaaaagcttgagcctaacatagcttcagctttcctaaagtacaagatttatcttcagaagaaagaccaggatggggctattactcagattcaggcaatgacaacctgccttgattttgcgccagactttctctcccttgcagcccatgaagctgttgcctgccgtactctttctattgctgttgctgctctatcaagtctgctgaacttttatgccccaggaaaatccatgccaacaagtgaagtcgtagttctgcgcaccttggtcacaatccttactcaagaacctgggaatgagcttgaagccctcaagtttgttaagcgtgttcataaccgggcatctgagcttggacctaattgtttttttgggacaggggaggttggaaaacgggaaaggaattggtttgctgtgacttcatggaaccttgggacgaaaactggcactgagaaaaattatgaattatgtgccgaattctatagactggcatcagaattttattgtcttctggttgatgggcaggtaggagaaaacatggtctgcaaagcactgatactgactatatctgcaattatagcatcagaaaaccagaagaagacaacattgcctgaaagtgaagtgaaacaagctgtacagcttctagatagagcagggaagatactgaagtcaaccttaccagggaaacaacttagcggtgatccagttaccaccattgaacctgacctatacttcatctacaccttttgtgcctatgacatatatggaaggctcaatgattcaggattacagctacaacttgtgaagacttttgctagttcaaaggcctgcgatcccaagttcctccttcagattggcctcactgcttcacaaggtccacagtccaatcatgaagtagcgacctttgctctaaatgaatgcctctcagttttcctctcttcctcctctccggactaccaaaatgtggctctgattgtccggaagctcattgctgtgaccagcattcacaaaggtgatacagatgatgatgctgtgtataacatgtacaagcaagcttacagaattatggtaggactgaaggacagtgagtatccgactgaagaaggaaaatggctagcgatgactgcatggaatagggcatcagtgcctgtgaggcttggccagattgatgcggcaaggaaatggatggatgtcggtatgcagctagctaagcatgttaatggaatggagacttatagggcgtgcatggaggatttcattaccagctttgagaagaaatttggtgccccaaatgatggcgtaaacagacctcagctagtagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007143 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0034641 GO:0035822 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048232 GO:0048285 GO:0048609 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071139 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPO22

Protein Analysis

1095

Amino Acids

121.13

Weight (kDa)

5.29

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48385
fragaria_vesca	FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450 FvH4_2g17450
malus_domestica	MD05G1153400.v1.1 MD10G1147800.v1.1
prunus_persica	Prupe.8G186800_v2.0.a1 Prupe.8G186800_v2.0.a1
pyrus_communis	pycom05g14780 pycom10g12790
rosa_chinensis	RchiOBHm_Chr6g0282181
rosa_laevigata	RLG00000012904
rosa_multiflora	Rmu_sc0011940.1_g000005 Rmu_sc0011940.1_g000006 Rmu_sc0014549.1_g000009 Rmu_sc0021471.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186420
rosa_rugosa	Rorug06G0145900 Rorug06G0146000
rosa_samantha	Rh6AG259100 Rh6BG262400 Rh6CG261300 Rh6DG253400
rosa_wichuraiana	Rw6G022410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
AasI	GACNNNNNNGTC	1 cut(s)	805
Acc16I	TGCGCA	1 cut(s)	2225
Acc36I	ACCTGC	4 cut(s)	197, 1178, 2081, 2476
AccB1I	GGYRCC	2 cut(s)	307, 3245
AccB7I	CCANNNNNTGG	2 cut(s)	2926, 3257
AccBSI	CCGCTC	1 cut(s)	539
AccII	CGCG	4 cut(s)	257, 323, 336, 377
AccIII	TCCGGA	2 cut(s)	2911, 2940
AclWI	GGATC	4 cut(s)	425, 1672, 2657, 2789
AcoI	YGGCCR	5 cut(s)	124, 297, 829, 1062, 3121
AcsI	RAATTY	6 cut(s)	339, 992, 1878, 2438, 2459, 3239
AcuI	CTGAAG	9 cut(s)	488, 1299, 1882, 1977, 2006, 2648, 2795, 3059, 3081
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	4 cut(s)	2009, 2134, 2598, 3008
AflIII	ACRYGT	1 cut(s)	3003
AgeI	ACCGGT	1 cut(s)	387
AjiI	CACGTC	2 cut(s)	25, 1433
AjnI	CCWGG	8 cut(s)	1110, 1486, 1539, 1636, 2034, 2185, 2254, 2641
AjuI	GAANNNNNNNTTGG	2 cut(s)	1280, 1312
AleI	CACNNNNGTG	1 cut(s)	2973
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	3 cut(s)	24, 1916, 3185
AlwI	GGATC	4 cut(s)	425, 1672, 2657, 2789
AlwNI	CAGNNNCTG	1 cut(s)	3110
Ama87I	CYCGRG	2 cut(s)	143, 774
Aor13HI	TCCGGA	2 cut(s)	2911, 2940
ApaI	GGGCCC	1 cut(s)	1122
ApoI	RAATTY	6 cut(s)	339, 992, 1878, 2438, 2459, 3239
AsiGI	ACCGGT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	729
AspA2I	CCTAGG	1 cut(s)	1921
AspLEI	GCGC	4 cut(s)	310, 667, 2089, 2226
AspS9I	GGNCC	5 cut(s)	259, 1118, 1119, 2318, 2837
AsuC2I	CCSGG	3 cut(s)	203, 355, 2303
AsuHPI	GGTGA	8 cut(s)	94, 232, 524, 834, 1617, 1745, 2672, 2987
AsuII	TTCGAA	1 cut(s)	1554
AsuNHI	GCTAGC	4 cut(s)	5, 1319, 3076, 3166
AvaI	CYCGRG	2 cut(s)	143, 774
AvaII	GGWCC	2 cut(s)	2318, 2837
AvrII	CCTAGG	1 cut(s)	1921
BaeGI	GKGCMC	2 cut(s)	1122, 3250
BaeI	ACNNNNGTAYC	2 cut(s)	2615, 2648
BalI	TGGCCA	2 cut(s)	299, 3123
BanI	GGYRCC	2 cut(s)	307, 3245
BanII	GRGCYC	1 cut(s)	1122
BbsI	GAAGAC	7 cut(s)	27, 801, 1104, 1525, 2462, 2567, 2774
Bbv12I	GWGCWC	1 cut(s)	579
BbvCI	CCTCAGC	2 cut(s)	57, 3273
BceAI	ACGGC	6 cut(s)	139, 177, 295, 844, 1443, 2115
BciT130I	CCWGG	8 cut(s)	1112, 1488, 1541, 1638, 2036, 2187, 2256, 2643
BciVI	GTATCC	2 cut(s)	1169, 3063
BclI	TGATCA	2 cut(s)	1792, 1939
BcnI	CCSGG	3 cut(s)	203, 355, 2303
BcoDI	GTCTC	3 cut(s)	24, 1916, 3185
BfmI	CTRYAG	1 cut(s)	2443
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	4 cut(s)	197, 1178, 2081, 2476
BfuI	GTATCC	2 cut(s)	1169, 3063
BglI	GCCNNNNNGGC	2 cut(s)	305, 3115
BlnI	CCTAGG	1 cut(s)	1921
BlpI	GCTNAGC	1 cut(s)	3171
Bme18I	GGWCC	2 cut(s)	2318, 2837
BmeT110I	CYCGRG	2 cut(s)	143, 774
BmgBI	CACGTC	2 cut(s)	25, 1433
BmgT120I	GGNCC	5 cut(s)	259, 1118, 1119, 2318, 2837
BmiI	GGNNCC	5 cut(s)	309, 386, 1120, 2390, 3247
BmrI	ACTGGG	1 cut(s)	940
BmtI	GCTAGC	4 cut(s)	9, 1323, 3080, 3170
BmuI	ACTGGG	1 cut(s)	940
BpiI	GAAGAC	7 cut(s)	27, 801, 1104, 1525, 2462, 2567, 2774
BplI	GAGNNNNNCTC	4 cut(s)	1208, 1240, 1556, 1588
BpmI	CTGGAG	1 cut(s)	1358
Bpu10I	CCTNAGC	2 cut(s)	57, 3273
Bpu1102I	GCTNAGC	1 cut(s)	3171
Bpu14I	TTCGAA	1 cut(s)	1554
BpuEI	CTTGAG	6 cut(s)	545, 611, 1932, 1997, 2232, 2261
BpuMI	CCSGG	3 cut(s)	203, 355, 2303
BsaHI	GRCGYC	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	24
BsaWI	WCCGGW	5 cut(s)	387, 1385, 1730, 2911, 2940
BsaXI	ACNNNNNCTCC	8 cut(s)	214, 235, 244, 265, 273, 303, 2084, 2114
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	7 cut(s)	726, 946, 1341, 1628, 2410, 2454, 2666
Bse3DI	GCAATG	6 cut(s)	1330, 1767, 1851, 2070, 2567, 2949
BseAI	TCCGGA	2 cut(s)	2911, 2940
BseBI	CCWGG	8 cut(s)	1112, 1488, 1541, 1638, 2036, 2187, 2256, 2643
BseGI	GGATG	7 cut(s)	939, 1135, 1306, 1321, 2044, 3153, 3157
BseMI	GCAATG	6 cut(s)	1330, 1767, 1851, 2070, 2567, 2949
BseNI	ACTGG	7 cut(s)	726, 946, 1341, 1628, 2410, 2454, 2666
BseRI	GAGGAG	5 cut(s)	222, 818, 1049, 1262, 2896
BseSI	GKGCMC	2 cut(s)	1122, 3250
BseX3I	CGGCCG	1 cut(s)	829
BsgI	GTGCAG	2 cut(s)	1641, 1845
Bsh1236I	CGCG	4 cut(s)	257, 323, 336, 377
Bsh1285I	CGRYCG	1 cut(s)	832
BshNI	GGYRCC	2 cut(s)	307, 3245
BshTI	ACCGGT	1 cut(s)	387
BsiEI	CGRYCG	1 cut(s)	832
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	2 cut(s)	143, 774
BsiSI	CCGG	9 cut(s)	203, 354, 388, 1386, 1731, 1801, 2302, 2912, 2941
BslFI	GGGAC	2 cut(s)	2350, 2410
BsmAI	GTCTC	3 cut(s)	24, 1916, 3185
BsmFI	GGGAC	2 cut(s)	2350, 2410
BsmI	GAATGC	7 cut(s)	678, 1488, 1550, 1648, 1765, 2885, 2964
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	2 cut(s)	143, 774
Bsp119I	TTCGAA	1 cut(s)	1554
Bsp120I	GGGCCC	1 cut(s)	1118
Bsp1286I	GDGCHC	3 cut(s)	579, 1122, 3250
Bsp13I	TCCGGA	2 cut(s)	2911, 2940
Bsp1407I	TGTACA	2 cut(s)	2596, 3006
Bsp143I	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
Bsp1720I	GCTNAGC	1 cut(s)	3171
Bsp19I	CCATGG	2 cut(s)	441, 583
BspEI	TCCGGA	2 cut(s)	2911, 2940
BspFNI	CGCG	4 cut(s)	257, 323, 336, 377
BspHI	TCATGA	2 cut(s)	616, 2851
BspLI	GGNNCC	5 cut(s)	309, 386, 1120, 2390, 3247
BspMI	ACCTGC	4 cut(s)	197, 1178, 2081, 2476
BspOI	GCTAGC	4 cut(s)	9, 1323, 3080, 3170
BspPI	GGATC	4 cut(s)	425, 1672, 2657, 2789
BspQI	GCTCTTC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	1554
BspT107I	GGYRCC	2 cut(s)	307, 3245
BspTNI	GGTCTC	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	539
BsrDI	GCAATG	6 cut(s)	1330, 1767, 1851, 2070, 2567, 2949
BsrFI	RCCGGY	1 cut(s)	387
BsrGI	TGTACA	2 cut(s)	2596, 3006
BsrI	ACTGG	7 cut(s)	726, 946, 1341, 1628, 2410, 2454, 2666
BssAI	RCCGGY	1 cut(s)	387
BssMI	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
BssNI	GRCGYC	1 cut(s)	308
BssT1I	CCWWGG	7 cut(s)	441, 583, 705, 1890, 1921, 2229, 2392
Bst2UI	CCWGG	8 cut(s)	1112, 1488, 1541, 1638, 2036, 2187, 2256, 2643
Bst4CI	ACNGT	7 cut(s)	85, 92, 658, 850, 1514, 2844, 3047
Bst6I	CTCTTC	6 cut(s)	567, 734, 735, 849, 1730, 2905
BstACI	GRCGYC	1 cut(s)	308
BstAPI	GCANNNNNTGC	2 cut(s)	673, 1771
BstAUI	TGTACA	2 cut(s)	2596, 3006
BstBI	TTCGAA	1 cut(s)	1554
BstC8I	GCNNGC	9 cut(s)	7, 690, 1321, 2128, 2791, 3015, 3078, 3168, 3205
BstDSI	CCRYGG	4 cut(s)	255, 321, 441, 583
BstEII	GGTNACC	3 cut(s)	530, 541, 840
BstENI	CCTNNNNNAGG	1 cut(s)	604
BstF5I	GGATG	7 cut(s)	939, 1135, 1306, 1321, 2044, 3153, 3157
BstFNI	CGCG	4 cut(s)	257, 323, 336, 377
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	4 cut(s)	310, 667, 2089, 2226
BstKTI	GATC	6 cut(s)	433, 1667, 1795, 1942, 2665, 2797
BstMAI	GTCTC	3 cut(s)	24, 1916, 3185
BstMBI	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
BstMCI	CGRYCG	1 cut(s)	832
BstNI	CCWGG	8 cut(s)	1112, 1488, 1541, 1638, 2036, 2187, 2256, 2643
BstNSI	RCATGY	2 cut(s)	3007, 3179
BstPI	GGTNACC	3 cut(s)	530, 541, 840
BstSFI	CTRYAG	1 cut(s)	2443
BstSLI	GKGCMC	2 cut(s)	1122, 3250
BstUI	CGCG	4 cut(s)	257, 323, 336, 377
BstV2I	GAAGAC	7 cut(s)	27, 801, 1104, 1525, 2462, 2567, 2774
BstXI	CCANNNNNNTGG	1 cut(s)	1153
BstZI	CGGCCG	1 cut(s)	829
BsuI	GTATCC	2 cut(s)	1169, 3063
BtgI	CCRYGG	4 cut(s)	255, 321, 441, 583
BtgZI	GCGATG	1 cut(s)	3095
BtrI	CACGTC	2 cut(s)	25, 1433
BtsCI	GGATG	7 cut(s)	939, 1135, 1306, 1321, 2044, 3153, 3157
BtsI	GCAGTG	1 cut(s)	2823
BtsIMutI	CAGTG	9 cut(s)	663, 819, 1334, 1519, 2409, 2513, 2823, 3052, 3111
BveI	ACCTGC	4 cut(s)	197, 1178, 2081, 2476
Cac8I	GCNNGC	9 cut(s)	7, 690, 1321, 2128, 2791, 3015, 3078, 3168, 3205
CaiI	CAGNNNCTG	1 cut(s)	3110
CciI	TCATGA	2 cut(s)	616, 2851
CfoI	GCGC	4 cut(s)	310, 667, 2089, 2226
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	5 cut(s)	259, 1118, 1119, 2318, 2837
Cfr42I	CCGCGG	2 cut(s)	258, 324
Csp6I	GTAC	4 cut(s)	2008, 2133, 2597, 3007
CspAI	ACCGGT	1 cut(s)	387
CviQI	GTAC	4 cut(s)	2008, 2133, 2597, 3007
DinI	GGCGCC	1 cut(s)	309
DpnI	GATC	6 cut(s)	432, 1666, 1794, 1941, 2664, 2796
DpnII	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
DrdI	GACNNNNNNGTC	1 cut(s)	805
DseDI	GACNNNNNNGTC	1 cut(s)	805
EaeI	YGGCCR	5 cut(s)	124, 297, 829, 1062, 3121
EagI	CGGCCG	1 cut(s)	829
Eam1104I	CTCTTC	6 cut(s)	567, 734, 735, 849, 1730, 2905
EarI	CTCTTC	6 cut(s)	567, 734, 735, 849, 1730, 2905
EclXI	CGGCCG	1 cut(s)	829
Eco130I	CCWWGG	7 cut(s)	441, 583, 705, 1890, 1921, 2229, 2392
Eco147I	AGGCCT	2 cut(s)	984, 2789
Eco24I	GRGCYC	1 cut(s)	1122
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	2318, 2837
Eco52I	CGGCCG	1 cut(s)	829
Eco57I	CTGAAG	9 cut(s)	488, 1299, 1882, 1977, 2006, 2648, 2795, 3059, 3081
Eco88I	CYCGRG	2 cut(s)	143, 774
Eco91I	GGTNACC	3 cut(s)	530, 541, 840
EcoNI	CCTNNNNNAGG	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	1118
EcoO65I	GGTNACC	3 cut(s)	530, 541, 840
EcoRI	GAATTC	2 cut(s)	1878, 2438
EcoRII	CCWGG	8 cut(s)	1110, 1486, 1539, 1636, 2034, 2185, 2254, 2641
EcoT14I	CCWWGG	7 cut(s)	441, 583, 705, 1890, 1921, 2229, 2392
EcoT22I	ATGCAT	2 cut(s)	1648, 1767
EcoT38I	GRGCYC	1 cut(s)	1122
EgeI	GGCGCC	1 cut(s)	309
EheI	GGCGCC	1 cut(s)	309
ErhI	CCWWGG	7 cut(s)	441, 583, 705, 1890, 1921, 2229, 2392
FalI	AAGNNNNNCTT	6 cut(s)	1583, 1615, 1833, 1865, 2621, 2653
FaqI	GGGAC	2 cut(s)	2350, 2410
FauI	CCCGC	3 cut(s)	262, 341, 370
FbaI	TGATCA	2 cut(s)	1792, 1939
FokI	GGATG	7 cut(s)	946, 1142, 1313, 1328, 2051, 3160, 3164
FriOI	GRGCYC	1 cut(s)	1122
FspI	TGCGCA	1 cut(s)	2225
GlaI	GCGC	4 cut(s)	309, 666, 2088, 2225
GsuI	CTGGAG	1 cut(s)	1358
HaeII	RGCGCY	1 cut(s)	311
HapII	CCGG	9 cut(s)	203, 354, 388, 1386, 1731, 1801, 2302, 2912, 2941
HhaI	GCGC	4 cut(s)	310, 667, 2089, 2226
Hin1I	GRCGYC	1 cut(s)	308
Hin6I	GCGC	4 cut(s)	308, 665, 2087, 2224
HinP1I	GCGC	4 cut(s)	308, 665, 2087, 2224
HincII	GTYRAC	4 cut(s)	88, 1206, 1537, 2634
HindII	GTYRAC	4 cut(s)	88, 1206, 1537, 2634
HindIII	AAGCTT	3 cut(s)	1617, 1973, 3015
HinfI	GANTC	9 cut(s)	476, 806, 974, 1039, 1088, 1142, 1873, 2056, 2741
HpaI	GTTAAC	2 cut(s)	1206, 1537
HpaII	CCGG	9 cut(s)	203, 354, 388, 1386, 1731, 1801, 2302, 2912, 2941
HphI	GGTGA	8 cut(s)	94, 232, 524, 834, 1617, 1745, 2672, 2987
Hpy99I	CGWCG	3 cut(s)	1167, 1437, 1440
HpyCH4III	ACNGT	7 cut(s)	85, 92, 658, 850, 1514, 2844, 3047
HpyCH4IV	ACGT	2 cut(s)	24, 1432
HpySE526I	ACGT	2 cut(s)	24, 1432
Hsp92I	GRCGYC	1 cut(s)	308
HspAI	GCGC	4 cut(s)	308, 665, 2087, 2224
KasI	GGCGCC	1 cut(s)	307
Kpn2I	TCCGGA	2 cut(s)	2911, 2940
Ksp22I	TGATCA	2 cut(s)	1792, 1939
KspAI	GTTAAC	2 cut(s)	1206, 1537
KspI	CCGCGG	2 cut(s)	258, 324
Kzo9I	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	3 cut(s)	323, 921, 1693
MaeII	ACGT	2 cut(s)	24, 1432
MalI	GATC	6 cut(s)	432, 1666, 1794, 1941, 2664, 2796
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
MhlI	GDGCHC	3 cut(s)	579, 1122, 3250
MlsI	TGGCCA	2 cut(s)	299, 3123
MluNI	TGGCCA	2 cut(s)	299, 3123
Mly113I	GGCGCC	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	815, 968
MmeI	TCCRAC	5 cut(s)	1170, 1278, 1671, 2329, 3080
Mox20I	TGGCCA	2 cut(s)	299, 3123
Mph1103I	ATGCAT	2 cut(s)	1648, 1767
MroI	TCCGGA	2 cut(s)	2911, 2940
MroXI	GAANNNNTTC	1 cut(s)	729
MscI	TGGCCA	2 cut(s)	299, 3123
MseI	TTAA	8 cut(s)	114, 602, 1205, 1254, 1536, 1959, 2286, 3180
MslI	CAYNNNNRTG	4 cut(s)	582, 2954, 2973, 3180
Msp20I	TGGCCA	2 cut(s)	299, 3123
MspA1I	CMGCKG	5 cut(s)	257, 323, 695, 1448, 1742
MspI	CCGG	9 cut(s)	203, 354, 388, 1386, 1731, 1801, 2302, 2912, 2941
Mva1269I	GAATGC	7 cut(s)	678, 1488, 1550, 1648, 1765, 2885, 2964
MvaI	CCWGG	8 cut(s)	1112, 1488, 1541, 1638, 2036, 2187, 2256, 2643
MvnI	CGCG	4 cut(s)	257, 323, 336, 377
NarI	GGCGCC	1 cut(s)	308
NciI	CCSGG	3 cut(s)	203, 355, 2303
NcoI	CCATGG	2 cut(s)	441, 583
NdeII	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
NheI	GCTAGC	4 cut(s)	5, 1319, 3076, 3166
NlaIV	GGNNCC	5 cut(s)	309, 386, 1120, 2390, 3247
NmeAIII	GCCGAG	1 cut(s)	857
NmuCI	GTSAC	7 cut(s)	530, 817, 840, 901, 2233, 2377, 2956
NsbI	TGCGCA	1 cut(s)	2225
NsiI	ATGCAT	2 cut(s)	1648, 1767
NspI	RCATGY	2 cut(s)	3007, 3179
NspV	TTCGAA	1 cut(s)	1554
OliI	CACNNNNGTG	1 cut(s)	2973
PaeR7I	CTCGAG	1 cut(s)	774
PagI	TCATGA	2 cut(s)	616, 2851
PaqCI	CACCTGC	1 cut(s)	197
PceI	AGGCCT	2 cut(s)	984, 2789
PciI	ACATGT	1 cut(s)	3003
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	1882
PctI	GAATGC	7 cut(s)	678, 1488, 1550, 1648, 1765, 2885, 2964
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	7 cut(s)	476, 1039, 1088, 1142, 1873, 2056, 2741
PflMI	CCANNNNNTGG	2 cut(s)	2926, 3257
PinAI	ACCGGT	1 cut(s)	387
PleI	GAGTC	2 cut(s)	814, 968
PluTI	GGCGCC	1 cut(s)	311
PpsI	GAGTC	2 cut(s)	814, 968
PscI	ACATGT	1 cut(s)	3003
Psp6I	CCWGG	8 cut(s)	1110, 1486, 1539, 1636, 2034, 2185, 2254, 2641
PspEI	GGTNACC	3 cut(s)	530, 541, 840
PspGI	CCWGG	8 cut(s)	1110, 1486, 1539, 1636, 2034, 2185, 2254, 2641
PspN4I	GGNNCC	5 cut(s)	309, 386, 1120, 2390, 3247
PspOMI	GGGCCC	1 cut(s)	1118
PspPI	GGNCC	5 cut(s)	259, 1118, 1119, 2318, 2837
PstNI	CAGNNNCTG	1 cut(s)	3110
PvuII	CAGCTG	3 cut(s)	695, 1448, 1742
RsaI	GTAC	4 cut(s)	2009, 2134, 2598, 3008
RsaNI	GTAC	4 cut(s)	2008, 2133, 2597, 3007
RseI	CAYNNNNRTG	4 cut(s)	582, 2954, 2973, 3180
SacII	CCGCGG	2 cut(s)	258, 324
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	8 cut(s)	114, 602, 1205, 1254, 1536, 1959, 2286, 3180
Sau3AI	GATC	6 cut(s)	430, 1664, 1792, 1939, 2662, 2794
Sau96I	GGNCC	5 cut(s)	259, 1118, 1119, 2318, 2837
SchI	GAGTC	2 cut(s)	815, 968
SduI	GDGCHC	3 cut(s)	579, 1122, 3250
SfcI	CTRYAG	1 cut(s)	2443
SfoI	GGCGCC	1 cut(s)	309
Sfr274I	CTCGAG	1 cut(s)	774
Sfr303I	CCGCGG	2 cut(s)	258, 324
SfuI	TTCGAA	1 cut(s)	1554
SgrBI	CCGCGG	2 cut(s)	258, 324
SinI	GGWCC	2 cut(s)	2318, 2837
SlaI	CTCGAG	1 cut(s)	774
SmiMI	CAYNNNNRTG	4 cut(s)	582, 2954, 2973, 3180
SmlI	CTYRAG	7 cut(s)	524, 590, 774, 1947, 1976, 2247, 2276
SmoI	CTYRAG	7 cut(s)	524, 590, 774, 1947, 1976, 2247, 2276
SseBI	AGGCCT	2 cut(s)	984, 2789
SspDI	GGCGCC	1 cut(s)	307
StuI	AGGCCT	2 cut(s)	984, 2789
StyI	CCWWGG	7 cut(s)	441, 583, 705, 1890, 1921, 2229, 2392
TaaI	ACNGT	7 cut(s)	85, 92, 658, 850, 1514, 2844, 3047
TaiI	ACGT	2 cut(s)	27, 1435
TaqI	TCGA	7 cut(s)	183, 775, 797, 1165, 1554, 1863, 1876
TatI	WGTACW	3 cut(s)	2007, 2596, 3006
TauI	GCSGC	6 cut(s)	18, 260, 326, 688, 1064, 3137
TfiI	GAWTC	7 cut(s)	476, 1039, 1088, 1142, 1873, 2056, 2741
Tru1I	TTAA	8 cut(s)	114, 602, 1205, 1254, 1536, 1959, 2286, 3180
Tru9I	TTAA	8 cut(s)	114, 602, 1205, 1254, 1536, 1959, 2286, 3180
TscAI	CASTG	9 cut(s)	663, 826, 1341, 1519, 2416, 2520, 2830, 3052, 3111
TseFI	GTSAC	7 cut(s)	530, 817, 840, 901, 2233, 2377, 2956
Tsp45I	GTSAC	7 cut(s)	530, 817, 840, 901, 2233, 2377, 2956
TspGWI	ACGGA	1 cut(s)	1151
TspRI	CASTG	9 cut(s)	663, 826, 1341, 1519, 2416, 2520, 2830, 3052, 3111
Van91I	CCANNNNNTGG	2 cut(s)	2926, 3257
VpaK11BI	GGWCC	2 cut(s)	2318, 2837
XagI	CCTNNNNNAGG	1 cut(s)	604
XapI	RAATTY	6 cut(s)	339, 992, 1878, 2438, 2459, 3239
XbaI	TCTAGA	1 cut(s)	2605
XceI	RCATGY	2 cut(s)	3007, 3179
XhoI	CTCGAG	1 cut(s)	774
XmaJI	CCTAGG	1 cut(s)	1921
XmnI	GAANNNNTTC	1 cut(s)	729
Zsp2I	ATGCAT	2 cut(s)	1648, 1767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.