Rmu_sc0012075.1_g000006

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012075.1
Physical Location & Seq
Forward (+)
45367 .. 46829
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012075.1_g000006.1.cds

Sequence Viewer

Length: 954 bp
atgaagctcgcaggactcaaatcaatcgacgacgctcacgacgagtcggtatgggccgtcacctgggttccggcgaccgaagcccgacccgctttgttgttaaccgggtcactcgacgagaccgttcggctatggcaaccggacgagctggtgaaccggggaaagatgaccggacactgcctcggcgtggcttccgtggcggctcaccccttgggcttcatcgccgcctctgcttcgcttgatagcttcgttaggatcttcgacgttgactccaacaccaccatcgccagtttcgaggcgccgccctccgaagtctggcaattacgcttcaatccccagggtaccatgctagccgcggccggtggtggcagtgcctcagtaaaggtctgggacaccagcacgtggaacctggttgccacattgtcgattcctcgcccagaaggaaccaagcctgctgacaaaagcagcagcaagaagtttgtgctatcggttgcctggagtcctgatgggagacgcatagcttgtggctccatggatggaaccgtttctgttttcgacacagatcgcggcaagttcctgcaccacctggaaggccactgcatgcccgtgaggtcccttgtgttttcccctgttgaaccgcggttactcttcactggctcagacgatcaacatgtgcacatgtatgatgctgaggggaaaacccaggttgggtccatgtcagggcataacggctgggtcttgagtgttgatgcaagcacagatggggcagcccttgcaactggttcaagtgatagaactgtgaagctgtgggatattggcatgaaggcagctgtgcagacaatgagcaaccataatgaccaagtttggggagtggcctttcgacctggaggaatgcctggcagacttgctagtgtctctgatgacaagagcatatcactgtatgactactcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

317

Amino Acids

33.93

Weight (kDa)

5.65

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 2 cut(s) 298, 341
AccB7I CCANNNNNTGG 1 cut(s) 402
AccII CGCG 3 cut(s) 356, 567, 640
AciI CCGC 9 cut(s) 90, 200, 225, 302, 354, 356, 567, 638, 640
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 357
AcvI CACGTG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
AflIII ACRYGT 2 cut(s) 670, 678
AgsI TTSAA 3 cut(s) 331, 635, 786
AjnI CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
AluBI AGCT 6 cut(s) 7, 148, 246, 521, 805, 830
AluI AGCT 6 cut(s) 7, 148, 246, 521, 805, 830
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 3 cut(s) 113, 505, 919
Alw44I GTGCAC 1 cut(s) 674
AlwI GGATC 1 cut(s) 263
AoxI GGCC 4 cut(s) 54, 357, 592, 873
ApaLI GTGCAC 1 cut(s) 674
ApeKI GCWGC 4 cut(s) 465, 468, 767, 827
Asp700I GAANNNNTTC 1 cut(s) 544
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 3 cut(s) 54, 612, 711
AsuC2I CCSGG 2 cut(s) 106, 158
AsuHPI GGTGA 3 cut(s) 52, 163, 197
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 2 cut(s) 612, 711
BaeGI GKGCMC 1 cut(s) 678
BanI GGYRCC 2 cut(s) 298, 341
BbrPI CACGTG 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 4 cut(s) 477, 480, 779, 839
BccI CCATC 4 cut(s) 290, 500, 530, 755
BceAI ACGGC 2 cut(s) 41, 745
BciT130I CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
BcnI CCSGG 2 cut(s) 106, 158
BcoDI GTCTC 3 cut(s) 113, 505, 919
BfaI CTAG 2 cut(s) 350, 909
BfoI RGCGCY 1 cut(s) 302
Bme18I GGWCC 2 cut(s) 612, 711
BmgT120I GGNCC 3 cut(s) 54, 612, 711
BmiI GGNNCC 9 cut(s) 69, 300, 343, 407, 445, 529, 541, 614, 712
BmsI GCATC 2 cut(s) 676, 739
BmtI GCTAGC 1 cut(s) 353
BpmI CTGGAG 2 cut(s) 517, 906
Bpu10I CCTNAGC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 106, 158
BsaAI YACGTR 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 113
BsaWI WCCGGW 2 cut(s) 139, 170
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
Bse118I RCCGGY 1 cut(s) 359
Bse1I ACTGG 3 cut(s) 288, 658, 784
BseBI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
BseMII CTCAG 3 cut(s) 390, 672, 681
BseNI ACTGG 3 cut(s) 288, 658, 784
BseSI GKGCMC 1 cut(s) 678
BseX3I CGGCCG 1 cut(s) 357
BseXI GCAGC 4 cut(s) 477, 480, 779, 839
BseYI CCCAGC 1 cut(s) 732
BsgI GTGCAG 2 cut(s) 563, 854
Bsh1236I CGCG 3 cut(s) 356, 567, 640
Bsh1285I CGRYCG 2 cut(s) 78, 360
BshFI GGCC 4 cut(s) 56, 359, 594, 875
BshNI GGYRCC 2 cut(s) 298, 341
BsiEI CGRYCG 2 cut(s) 78, 360
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 6 cut(s) 71, 105, 140, 157, 171, 360
BslFI GGGAC 2 cut(s) 404, 598
BslI CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
BsmAI GTCTC 3 cut(s) 113, 505, 919
BsmBI CGTCTC 1 cut(s) 505
BsmFI GGGAC 2 cut(s) 404, 598
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 4 cut(s) 56, 359, 594, 875
Bso31I GGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 255, 562, 664
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 9 cut(s) 90, 200, 225, 302, 354, 356, 567, 638, 640
BspANI GGCC 4 cut(s) 56, 359, 594, 875
BspCNI CTCAG 3 cut(s) 389, 671, 682
BspFNI CGCG 3 cut(s) 356, 567, 640
BspLI GGNNCC 9 cut(s) 69, 300, 343, 407, 445, 529, 541, 614, 712
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 298, 341
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 359
BsrI ACTGG 3 cut(s) 288, 658, 784
BssAI RCCGGY 1 cut(s) 359
BssMI GATC 3 cut(s) 255, 562, 664
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 2 cut(s) 210, 531
Bst2UI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
Bst4CI ACNGT 4 cut(s) 124, 544, 799, 939
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 402
BstC8I GCNNGC 5 cut(s) 9, 351, 453, 602, 754
BstDEI CTNAG 3 cut(s) 376, 658, 690
BstDSI CCRYGG 4 cut(s) 195, 354, 531, 638
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 3 cut(s) 356, 567, 640
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 3 cut(s) 258, 565, 667
BstMAI GTCTC 3 cut(s) 113, 505, 919
BstMBI GATC 3 cut(s) 255, 562, 664
BstMCI CGRYCG 2 cut(s) 78, 360
BstMWI GCNNNNNNNGC 5 cut(s) 80, 89, 197, 230, 773
BstNI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
BstNSI RCATGY 3 cut(s) 604, 674, 682
BstSLI GKGCMC 1 cut(s) 678
BstUI CGCG 3 cut(s) 356, 567, 640
BstV1I GCAGC 4 cut(s) 477, 480, 779, 839
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BstZI CGGCCG 1 cut(s) 357
BsuRI GGCC 4 cut(s) 56, 359, 594, 875
BtgI CCRYGG 4 cut(s) 195, 354, 531, 638
BtgZI GCGATG 2 cut(s) 205, 268
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 3 cut(s) 175, 376, 595
BtsIMutI CAGTG 5 cut(s) 175, 376, 595, 651, 935
Cac8I GCNNGC 5 cut(s) 9, 351, 453, 602, 754
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 3 cut(s) 54, 612, 711
Cfr42I CCGCGG 2 cut(s) 357, 641
CseI GACGC 2 cut(s) 41, 522
CsiI ACCWGGT 1 cut(s) 408
Csp6I GTAC 1 cut(s) 342
CviAII CATG 7 cut(s) 346, 532, 601, 671, 679, 715, 820
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 3 cut(s) 376, 658, 690
DinI GGCGCC 1 cut(s) 300
DpnI GATC 3 cut(s) 257, 564, 666
DpnII GATC 3 cut(s) 255, 562, 664
EaeI YGGCCR 1 cut(s) 357
EagI CGGCCG 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
EclXI CGGCCG 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 210, 531
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 612, 711
Eco52I CGGCCG 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 612
EcoRII CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
EcoT14I CCWWGG 2 cut(s) 210, 531
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
ErhI CCWWGG 2 cut(s) 210, 531
Esp3I CGTCTC 1 cut(s) 505
FaeI CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
FaqI GGGAC 2 cut(s) 404, 598
FatI CATG 7 cut(s) 345, 531, 600, 670, 678, 714, 819
FauI CCCGC 1 cut(s) 97
FokI GGATG 1 cut(s) 548
FspBI CTAG 2 cut(s) 350, 909
GlaI GCGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 736
GsuI CTGGAG 2 cut(s) 517, 906
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 4 cut(s) 56, 359, 594, 875
HapII CCGG 6 cut(s) 71, 105, 140, 157, 171, 360
HgaI GACGC 2 cut(s) 41, 522
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 2 cut(s) 102, 268
HindII GTYRAC 2 cut(s) 102, 268
HinfI GANTC 5 cut(s) 15, 44, 269, 427, 499
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 6 cut(s) 71, 105, 140, 157, 171, 360
HphI GGTGA 3 cut(s) 52, 163, 197
Hpy166II GTNNAC 4 cut(s) 102, 154, 268, 676
Hpy188I TCNGA 3 cut(s) 310, 661, 919
Hpy188III TCNNGA 4 cut(s) 38, 503, 739, 951
Hpy8I GTNNAC 4 cut(s) 102, 154, 268, 676
Hpy99I CGWCG 5 cut(s) 32, 35, 44, 119, 266
HpyAV CCTTC 3 cut(s) 434, 584, 817
HpyCH4III ACNGT 4 cut(s) 124, 544, 799, 939
HpyCH4IV ACGT 2 cut(s) 264, 401
HpyCH4V TGCA 6 cut(s) 580, 600, 676, 752, 776, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 89, 197, 230, 773
HpyF3I CTNAG 3 cut(s) 376, 658, 690
HpySE526I ACGT 2 cut(s) 264, 401
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
HspAI GCGC 1 cut(s) 299
KasI GGCGCC 1 cut(s) 298
KpnI GGTACC 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 102
KspI CCGCGG 2 cut(s) 357, 641
Kzo9I GATC 3 cut(s) 255, 562, 664
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 4 cut(s) 477, 480, 779, 839
LweI GCATC 2 cut(s) 676, 739
MabI ACCWGGT 1 cut(s) 408
MaeI CTAG 2 cut(s) 350, 909
MaeII ACGT 2 cut(s) 264, 401
MaeIII GTNAC 3 cut(s) 58, 108, 642
MalI GATC 3 cut(s) 257, 564, 666
MboI GATC 3 cut(s) 255, 562, 664
MboII GAAGA 2 cut(s) 250, 640
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 1 cut(s) 320
Mly113I GGCGCC 1 cut(s) 299
MlyI GAGTC 4 cut(s) 9, 53, 263, 508
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 9 cut(s) 191, 238, 289, 316, 385, 441, 603, 685, 881
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 2 cut(s) 605, 681
MspA1I CMGCKG 3 cut(s) 356, 640, 830
MspI CCGG 6 cut(s) 71, 105, 140, 157, 171, 360
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
MvnI CGCG 3 cut(s) 356, 567, 640
MwoI GCNNNNNNNGC 5 cut(s) 80, 89, 197, 230, 773
NarI GGCGCC 1 cut(s) 299
NciI CCSGG 2 cut(s) 106, 158
NcoI CCATGG 1 cut(s) 531
NdeII GATC 3 cut(s) 255, 562, 664
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
NlaIV GGNNCC 9 cut(s) 69, 300, 343, 407, 445, 529, 541, 614, 712
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 58, 108
NspI RCATGY 3 cut(s) 604, 674, 682
PaeI GCATGC 1 cut(s) 604
PasI CCCWGGG 1 cut(s) 337
PciI ACATGT 2 cut(s) 670, 678
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 39, 120, 291
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 427
PflMI CCANNNNNTGG 1 cut(s) 402
PleI GAGTC 4 cut(s) 9, 52, 263, 507
PluTI GGCGCC 1 cut(s) 302
PmaCI CACGTG 1 cut(s) 402
PmlI CACGTG 1 cut(s) 402
PpsI GAGTC 4 cut(s) 9, 52, 263, 507
Ppu21I YACGTR 1 cut(s) 402
PpuMI RGGWCCY 1 cut(s) 612
PscI ACATGT 2 cut(s) 670, 678
Psp5II RGGWCCY 1 cut(s) 612
Psp6I CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
PspCI CACGTG 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 732
PspGI CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
PspN4I GGNNCC 9 cut(s) 69, 300, 343, 407, 445, 529, 541, 614, 712
PspPI GGNCC 3 cut(s) 54, 612, 711
PspPPI RGGWCCY 1 cut(s) 612
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PsuI RGATCY 1 cut(s) 255
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 2 cut(s) 605, 681
SacII CCGCGG 2 cut(s) 357, 641
SaqAI TTAA 1 cut(s) 101
Sau3AI GATC 3 cut(s) 255, 562, 664
Sau96I GGNCC 3 cut(s) 54, 612, 711
SchI GAGTC 4 cut(s) 9, 53, 263, 508
SduI GDGCHC 1 cut(s) 678
SexAI ACCWGGT 1 cut(s) 408
SfaNI GCATC 2 cut(s) 676, 739
SfoI GGCGCC 1 cut(s) 300
Sfr303I CCGCGG 2 cut(s) 357, 641
SgrBI CCGCGG 2 cut(s) 357, 641
SinI GGWCC 2 cut(s) 612, 711
SmiMI CAYNNNNRTG 2 cut(s) 605, 681
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SphI GCATGC 1 cut(s) 604
Sse9I AATT 1 cut(s) 320
SsiI CCGC 9 cut(s) 90, 200, 225, 302, 354, 356, 567, 638, 640
SspDI GGCGCC 1 cut(s) 298
SspMI CTAG 2 cut(s) 350, 909
StyI CCWWGG 2 cut(s) 210, 531
TaaI ACNGT 4 cut(s) 124, 544, 799, 939
TaiI ACGT 2 cut(s) 267, 404
TaqI TCGA 7 cut(s) 27, 114, 261, 294, 425, 555, 880
TaqII GACCGA 1 cut(s) 92
TasI AATT 1 cut(s) 320
TauI GCSGC 6 cut(s) 203, 227, 304, 356, 359, 570
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 5 cut(s) 182, 376, 602, 658, 942
TseFI GTSAC 2 cut(s) 58, 108
TseI GCWGC 4 cut(s) 465, 468, 767, 827
Tsp45I GTSAC 2 cut(s) 58, 108
TspDTI ATGAA 3 cut(s) 17, 208, 836
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 5 cut(s) 182, 376, 602, 658, 942
Van91I CCANNNNNTGG 1 cut(s) 402
VneI GTGCAC 1 cut(s) 674
VpaK11BI GGWCC 2 cut(s) 612, 711
XceI RCATGY 3 cut(s) 604, 674, 682
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 2 cut(s) 350, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.