Rroxscaffold_6G00393330

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006297
Physical Location & Seq
Reverse (-)
13389343 .. 13390862
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393330.1

Sequence Viewer

Length: 954 bp
ATGAAGCTCGCAGGACTCAAATCAATCGACGACGCTCACGACGAGTCTGTATGGGCCGTCACCTGGGTTCCGGCGACTGAAGCCCGACCCGCTTTGTTGTTAACCGGGTCACTCGACGAGACCGTTCGGCTATGGCAACCGGACGAGCTGGTGAACCGGGGAAAGATGACCGGACACTGCCTCGGCGTGGCTTCCGTGGCGGCTCACCCCTCCGGCTACATCGCCGCCTCTGCTTCGCTCGATAGCTTCGTTAGGATCTTCGACGTTGACTCCAACACCACCATCGCCAGTTTCGAGGCGCCGCCCTCCGAAGTCTGGCAATTACGCTTCAATCCCCAGGGTACCATGCTAGCCGCGGCCGGAGGTGGCAGTGCCTCAGTAAAGGTCTGGGACACCAGCACGTGGAACCTGGTTGCCACATTGTCGATTCCTCGCCCAGAAGGAACCAAGCCTGCTGACAAAAGCAGCAGCAAGAAGTTTGTGCTATCAGTTGCCTGGAGTCCTGATGGGAGACGCATAGCTTGTGGCTCCATGGATGGAACTGTTTCTGTTTTCGACACAGATCGCGGCAAGTTCCTGCACCACCTGGAAGGCCACTGCATGCCCGTGAGGTCTCTTGTGTTTTCCCCTGTTGAACCGCGGTTACTCTTCACTGCCTCGGACGATCAACATGTGCACATGTATGATGCTGAGGGGAAAACCCAGGTTGGGTCCATGTCAGGGCATAACGGCTGGGTCTTGAGTGTCGATGCAAGCACAGATGGGGCAGCCCTTGCAACTGGTTCAAGTGATAGAACTGTGAAGCTGTGGGATATTGGCATGAAGGCAGCTGTGCAGACAATGAGCAACCATAATGACCAAGTCTGGGGAGTGGCCTTTCGACCTGGAGGAATGCCTGGCAGACTTGCTAGTGTCTCTGATGACAAGAGCATATCACTGTATGACTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000428 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0055087 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
WD40

Protein Analysis

317

Amino Acids

33.94

Weight (kDa)

5.65

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR3_2nd PF25172 7 - 87 3.6e-06 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 11 - 145 4.8e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 12 - 131 4.4e-14 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 12 - 142 1.1e-19 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 13 - 141 6.4e-18 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 13 - 139 2.4e-18 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 13 - 141 1.1e-09 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 25 - 135 9.3e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 31 - 218 3e-20 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 32 - 122 9.9e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML PF23409 41 - 232 1.6e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR19_1st PF23389 71 - 234 1.2e-07 WDR19 first beta-propeller
Beta-prop_WDR3_2nd PF25172 85 - 315 2.2e-26 WDR3 second beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 105 - 235 3.5e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_1st PF25173 122 - 315 2.1e-34 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 125 - 289 1.2e-18 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EIPR1 PF23609 152 - 270 3.6e-06 EIPR1 beta-propeller
WD40_CDC20-Fz PF24807 153 - 315 7.1e-25 CDC20/Fizzy WD40 domain
WD40_MABP1-WDR62_2nd PF24782 153 - 236 5.7e-08 MABP1/WDR62 second WD40 domain
ANAPC4_WD40 PF12894 155 - 199 4.3e-06 Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 155 - 233 1.4e-06 WDR90/POC16, second beta-propeller
WD40_Prp19 PF24814 156 - 209 1.3e-06 Prp19 WD40 domain
Beta-prop_RIG_2nd PF23775 157 - 234 6e-07 RIG second beta-propeller
Beta-prop_WDR5 PF25175 157 - 316 4.4e-34 WDR5 beta-propeller domain
WDR55 PF24796 158 - 295 2.5e-15 WDR55
Beta-prop_THOC3 PF25174 158 - 243 3e-19 THOC3 beta-propeller domain
WD40 PF00400 159 - 186 1.9e-07 WD domain, G-beta repeat
WD40_Gbeta PF25391 159 - 316 3.6e-16 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_1st PF25171 159 - 270 7.9e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 173 - 296 1e-08 WDR36/Utp21 first beta-propeller
EIF3I PF24805 196 - 295 7.9e-12 EIF3I
Beta-prop_IFT122_1st PF23381 199 - 306 7.7e-06 IFT122 first beta-propeller
WD40_Prp19 PF24814 212 - 316 4.7e-15 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 214 - 297 1.2e-07 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 216 - 283 1e-09 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 234 - 316 2.7e-07 TEP-1 second beta-propeller
WD40 PF00400 234 - 271 4.1e-09 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 237 - 316 1.5e-06 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 242 - 316 5.7e-14 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 2 cut(s) 298, 341
AccB7I CCANNNNNTGG 1 cut(s) 402
AccII CGCG 3 cut(s) 356, 567, 640
AciI CCGC 9 cut(s) 90, 200, 225, 302, 354, 356, 567, 638, 640
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 357
AcuI CTGAAG 1 cut(s) 99
AcvI CACGTG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
AflIII ACRYGT 2 cut(s) 670, 678
AgsI TTSAA 3 cut(s) 331, 635, 786
AjnI CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
AluBI AGCT 6 cut(s) 7, 148, 246, 521, 805, 830
AluI AGCT 6 cut(s) 7, 148, 246, 521, 805, 830
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 4 cut(s) 113, 505, 618, 919
Alw44I GTGCAC 1 cut(s) 674
AlwI GGATC 1 cut(s) 263
AoxI GGCC 4 cut(s) 54, 357, 592, 873
ApaLI GTGCAC 1 cut(s) 674
ApeKI GCWGC 4 cut(s) 465, 468, 767, 827
Asp700I GAANNNNTTC 1 cut(s) 544
Asp718I GGTACC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 2 cut(s) 54, 711
AsuC2I CCSGG 2 cut(s) 106, 158
AsuHPI GGTGA 3 cut(s) 52, 163, 197
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 1 cut(s) 711
BaeGI GKGCMC 1 cut(s) 678
BanI GGYRCC 2 cut(s) 298, 341
BbrPI CACGTG 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 690
BbvI GCAGC 4 cut(s) 477, 480, 779, 839
BccI CCATC 4 cut(s) 290, 500, 530, 755
BceAI ACGGC 2 cut(s) 41, 745
BciT130I CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
BcnI CCSGG 2 cut(s) 106, 158
BcoDI GTCTC 4 cut(s) 113, 505, 618, 919
BfaI CTAG 2 cut(s) 350, 909
BfoI RGCGCY 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 711
BmgT120I GGNCC 2 cut(s) 54, 711
BmiI GGNNCC 7 cut(s) 69, 300, 343, 407, 445, 529, 712
BmsI GCATC 2 cut(s) 676, 739
BmtI GCTAGC 1 cut(s) 353
BpmI CTGGAG 2 cut(s) 517, 906
Bpu10I CCTNAGC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 760
BpuMI CCSGG 2 cut(s) 106, 158
BsaAI YACGTR 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 2 cut(s) 113, 618
BsaWI WCCGGW 2 cut(s) 139, 170
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
Bse1I ACTGG 2 cut(s) 288, 784
BseBI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
BseMII CTCAG 2 cut(s) 390, 681
BseNI ACTGG 2 cut(s) 288, 784
BseSI GKGCMC 1 cut(s) 678
BseX3I CGGCCG 1 cut(s) 357
BseXI GCAGC 4 cut(s) 477, 480, 779, 839
BseYI CCCAGC 1 cut(s) 732
BsgI GTGCAG 2 cut(s) 563, 854
Bsh1236I CGCG 3 cut(s) 356, 567, 640
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 4 cut(s) 56, 359, 594, 875
BshNI GGYRCC 2 cut(s) 298, 341
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 678
BsiSI CCGG 7 cut(s) 71, 105, 140, 157, 171, 213, 360
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 7 cut(s) 63, 187, 315, 402, 708, 720, 865
BsmAI GTCTC 4 cut(s) 113, 505, 618, 919
BsmBI CGTCTC 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 404
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 4 cut(s) 56, 359, 594, 875
Bso31I GGTCTC 2 cut(s) 113, 618
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 3 cut(s) 255, 562, 664
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 9 cut(s) 90, 200, 225, 302, 354, 356, 567, 638, 640
BspANI GGCC 4 cut(s) 56, 359, 594, 875
BspCNI CTCAG 2 cut(s) 389, 682
BspFNI CGCG 3 cut(s) 356, 567, 640
BspLI GGNNCC 7 cut(s) 69, 300, 343, 407, 445, 529, 712
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 298, 341
BspTNI GGTCTC 2 cut(s) 113, 618
BsrI ACTGG 2 cut(s) 288, 784
BssMI GATC 3 cut(s) 255, 562, 664
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
Bst4CI ACNGT 4 cut(s) 124, 544, 799, 939
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 402
BstC8I GCNNGC 5 cut(s) 9, 351, 453, 602, 754
BstDEI CTNAG 2 cut(s) 376, 690
BstDSI CCRYGG 4 cut(s) 195, 354, 531, 638
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 3 cut(s) 356, 567, 640
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 3 cut(s) 258, 565, 667
BstMAI GTCTC 4 cut(s) 113, 505, 618, 919
BstMBI GATC 3 cut(s) 255, 562, 664
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 5 cut(s) 80, 89, 197, 230, 773
BstNI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
BstNSI RCATGY 3 cut(s) 604, 674, 682
BstSLI GKGCMC 1 cut(s) 678
BstUI CGCG 3 cut(s) 356, 567, 640
BstV1I GCAGC 4 cut(s) 477, 480, 779, 839
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BstZI CGGCCG 1 cut(s) 357
BsuRI GGCC 4 cut(s) 56, 359, 594, 875
BtgI CCRYGG 4 cut(s) 195, 354, 531, 638
BtgZI GCGATG 2 cut(s) 205, 268
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 4 cut(s) 175, 376, 595, 651
BtsIMutI CAGTG 5 cut(s) 175, 376, 595, 651, 935
Cac8I GCNNGC 5 cut(s) 9, 351, 453, 602, 754
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 54, 711
Cfr42I CCGCGG 2 cut(s) 357, 641
CseI GACGC 2 cut(s) 41, 522
CsiI ACCWGGT 1 cut(s) 408
Csp6I GTAC 1 cut(s) 342
CviAII CATG 7 cut(s) 346, 532, 601, 671, 679, 715, 820
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 376, 690
DinI GGCGCC 1 cut(s) 300
DpnI GATC 3 cut(s) 257, 564, 666
DpnII GATC 3 cut(s) 255, 562, 664
EaeI YGGCCR 1 cut(s) 357
EagI CGGCCG 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
EclXI CGGCCG 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 531
Eco31I GGTCTC 2 cut(s) 113, 618
Eco47I GGWCC 1 cut(s) 711
Eco52I CGGCCG 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 99
Eco72I CACGTG 1 cut(s) 402
EcoRII CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
EcoT14I CCWWGG 1 cut(s) 531
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 531
Esp3I CGTCTC 1 cut(s) 505
FaeI CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
FaqI GGGAC 1 cut(s) 404
FatI CATG 7 cut(s) 345, 531, 600, 670, 678, 714, 819
FauI CCCGC 1 cut(s) 97
FokI GGATG 1 cut(s) 548
FspBI CTAG 2 cut(s) 350, 909
GlaI GCGC 1 cut(s) 300
GsaI CCCAGC 1 cut(s) 736
GsuI CTGGAG 2 cut(s) 517, 906
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 4 cut(s) 56, 359, 594, 875
HapII CCGG 7 cut(s) 71, 105, 140, 157, 171, 213, 360
HgaI GACGC 2 cut(s) 41, 522
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HincII GTYRAC 2 cut(s) 102, 268
HindII GTYRAC 2 cut(s) 102, 268
HinfI GANTC 5 cut(s) 15, 44, 269, 427, 499
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 7 cut(s) 71, 105, 140, 157, 171, 213, 360
HphI GGTGA 3 cut(s) 52, 163, 197
Hpy166II GTNNAC 4 cut(s) 102, 154, 268, 676
Hpy188I TCNGA 3 cut(s) 310, 661, 919
Hpy188III TCNNGA 4 cut(s) 38, 503, 739, 951
Hpy8I GTNNAC 4 cut(s) 102, 154, 268, 676
Hpy99I CGWCG 5 cut(s) 32, 35, 44, 119, 266
HpyAV CCTTC 3 cut(s) 434, 584, 817
HpyCH4III ACNGT 4 cut(s) 124, 544, 799, 939
HpyCH4IV ACGT 2 cut(s) 264, 401
HpyCH4V TGCA 6 cut(s) 580, 600, 676, 752, 776, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 89, 197, 230, 773
HpyF3I CTNAG 2 cut(s) 376, 690
HpySE526I ACGT 2 cut(s) 264, 401
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
HspAI GCGC 1 cut(s) 299
KasI GGCGCC 1 cut(s) 298
KpnI GGTACC 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 102
KspI CCGCGG 2 cut(s) 357, 641
Kzo9I GATC 3 cut(s) 255, 562, 664
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 4 cut(s) 477, 480, 779, 839
LweI GCATC 2 cut(s) 676, 739
MabI ACCWGGT 1 cut(s) 408
MaeI CTAG 2 cut(s) 350, 909
MaeII ACGT 2 cut(s) 264, 401
MaeIII GTNAC 3 cut(s) 58, 108, 642
MalI GATC 3 cut(s) 257, 564, 666
MboI GATC 3 cut(s) 255, 562, 664
MboII GAAGA 2 cut(s) 250, 640
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 1 cut(s) 320
Mly113I GGCGCC 1 cut(s) 299
MlyI GAGTC 4 cut(s) 9, 53, 263, 508
MmeI TCCRAC 1 cut(s) 297
MroXI GAANNNNTTC 1 cut(s) 544
MseI TTAA 1 cut(s) 101
MslI CAYNNNNRTG 2 cut(s) 605, 681
MspA1I CMGCKG 3 cut(s) 356, 640, 830
MspI CCGG 7 cut(s) 71, 105, 140, 157, 171, 213, 360
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 8 cut(s) 64, 338, 410, 496, 587, 704, 885, 897
MvnI CGCG 3 cut(s) 356, 567, 640
MwoI GCNNNNNNNGC 5 cut(s) 80, 89, 197, 230, 773
NarI GGCGCC 1 cut(s) 299
NciI CCSGG 2 cut(s) 106, 158
NcoI CCATGG 1 cut(s) 531
NdeII GATC 3 cut(s) 255, 562, 664
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 7 cut(s) 349, 535, 604, 674, 682, 718, 823
NlaIV GGNNCC 7 cut(s) 69, 300, 343, 407, 445, 529, 712
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 2 cut(s) 58, 108
NspI RCATGY 3 cut(s) 604, 674, 682
PaeI GCATGC 1 cut(s) 604
PasI CCCWGGG 1 cut(s) 337
PciI ACATGT 2 cut(s) 670, 678
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 39, 120, 246, 291
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 427
PflFI GACNNNGTC 1 cut(s) 860
PflMI CCANNNNNTGG 1 cut(s) 402
PleI GAGTC 4 cut(s) 9, 52, 263, 507
PluTI GGCGCC 1 cut(s) 302
PmaCI CACGTG 1 cut(s) 402
PmlI CACGTG 1 cut(s) 402
PpsI GAGTC 4 cut(s) 9, 52, 263, 507
Ppu21I YACGTR 1 cut(s) 402
PscI ACATGT 2 cut(s) 670, 678
Psp6I CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
PspCI CACGTG 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 732
PspGI CCWGG 8 cut(s) 62, 336, 408, 494, 585, 702, 883, 895
PspN4I GGNNCC 7 cut(s) 69, 300, 343, 407, 445, 529, 712
PspPI GGNCC 2 cut(s) 54, 711
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PsuI RGATCY 1 cut(s) 255
PsyI GACNNNGTC 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 2 cut(s) 605, 681
SacII CCGCGG 2 cut(s) 357, 641
SaqAI TTAA 1 cut(s) 101
Sau3AI GATC 3 cut(s) 255, 562, 664
Sau96I GGNCC 2 cut(s) 54, 711
SchI GAGTC 4 cut(s) 9, 53, 263, 508
SduI GDGCHC 1 cut(s) 678
SexAI ACCWGGT 1 cut(s) 408
SfaNI GCATC 2 cut(s) 676, 739
SfoI GGCGCC 1 cut(s) 300
Sfr303I CCGCGG 2 cut(s) 357, 641
SgrBI CCGCGG 2 cut(s) 357, 641
SinI GGWCC 1 cut(s) 711
SmiMI CAYNNNNRTG 2 cut(s) 605, 681
SmlI CTYRAG 1 cut(s) 739
SmoI CTYRAG 1 cut(s) 739
SphI GCATGC 1 cut(s) 604
Sse9I AATT 1 cut(s) 320
SsiI CCGC 9 cut(s) 90, 200, 225, 302, 354, 356, 567, 638, 640
SspDI GGCGCC 1 cut(s) 298
SspMI CTAG 2 cut(s) 350, 909
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 4 cut(s) 124, 544, 799, 939
TaiI ACGT 2 cut(s) 267, 404
TaqI TCGA 9 cut(s) 27, 114, 240, 261, 294, 425, 555, 747, 880
TasI AATT 1 cut(s) 320
TauI GCSGC 6 cut(s) 203, 227, 304, 356, 359, 570
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TscAI CASTG 5 cut(s) 182, 376, 602, 658, 942
TseFI GTSAC 2 cut(s) 58, 108
TseI GCWGC 4 cut(s) 465, 468, 767, 827
Tsp45I GTSAC 2 cut(s) 58, 108
TspDTI ATGAA 2 cut(s) 17, 836
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 5 cut(s) 182, 376, 602, 658, 942
Tth111I GACNNNGTC 1 cut(s) 860
Van91I CCANNNNNTGG 1 cut(s) 402
VneI GTGCAC 1 cut(s) 674
VpaK11BI GGWCC 1 cut(s) 711
XceI RCATGY 3 cut(s) 604, 674, 682
XmnI GAANNNNTTC 1 cut(s) 544
XspI CTAG 2 cut(s) 350, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.