Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006297

Physical Location & Seq

Genomic Coordinates Forward (+)

22951908 .. 22952210

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGTGGCCCGTGGAGTTTCAGTCGTGCTTTGTTTGTTATACAACCATATGATGGAGTGTCGTCTTTGCGATCTGTAGAGATGGAGGATTTATTTTTTTGGGTTCGCATCACAAATATGTCGCCGGCATATGAGCAAAGGAACACTATTGCAAACATTGCTTCTGTTGCAGCTGGTAAATTCCTTGATCTGGATCAAAAACTTTTTGATGCAGCTGGAGAGATTACGGTTAGGGTTTTACATGCAATTTCGAAACCTTTCTTCACGCAAAAAACCCTAAAGTTTGCCAAAGGGGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000428 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031461 GO:0031974 GO:0031981 GO:0032259 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034968 GO:0035327 GO:0036211 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051276 GO:0051568 GO:0055029 GO:0055087 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:1901564 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

WD40

Protein Analysis

100

Amino Acids

11.22

Weight (kDa)

8.06

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29830
fragaria_vesca	FvH4_1g30420
malus_domestica	MD02G1085500.v1.1 MD15G1212600.v1.1
prunus_persica	Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1 Prupe.6G180900_v2.0.a1
pyrus_communis	pycom02g06830 pycom15g18890
rosa_chinensis	RchiOBHm_Chr3g0490661
rosa_multiflora	Rmu_sc0006380.1_g000016 Rmu_sc0012075.1_g000006
rosa_roxburghii	Rroxscaffold_5G00351200 Rroxscaffold_6G00393330
rosa_rugosa	Rorug03G0245300 Rorug04G0070800
rosa_samantha	Rh3AG294500 Rh3BG330700 Rh3CG328200 Rh3DG327600
rosa_wichuraiana	Rw3G026030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	53, 190
AluBI	AGCT	2 cut(s)	173, 215
AluI	AGCT	2 cut(s)	173, 215
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	170, 212
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	8
AsuII	TTCGAA	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	182, 224
BccI	CCATC	2 cut(s)	47, 76
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	171, 213
BlsI	GCNGC	2 cut(s)	172, 214
BmgT120I	GGNCC	1 cut(s)	8
BmsI	GCATC	2 cut(s)	117, 199
BpmI	CTGGAG	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 190
Bse118I	RCCGGY	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	53, 190
BseMI	GCAATG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	182, 224
BshFI	GGCC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	53, 190
BsnI	GGCC	1 cut(s)	9
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	71, 187, 193
BspANI	GGCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	11
BssMI	GATC	3 cut(s)	71, 187, 193
Bst4CI	ACNGT	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	74, 190, 196
BstMBI	GATC	3 cut(s)	71, 187, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNSI	RCATGY	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	182, 224
BsuRI	GGCC	1 cut(s)	9
BtgI	CCRYGG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	3 cut(s)	9, 173, 215
CviKI_1	RGCY	3 cut(s)	9, 173, 215
DpnI	GATC	3 cut(s)	73, 189, 195
DpnII	GATC	3 cut(s)	71, 187, 193
FaeI	CATG	1 cut(s)	245
FaiI	YATR	7 cut(s)	41, 49, 51, 119, 130, 132, 243
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	2 cut(s)	49, 130
Fnu4HI	GCNGC	2 cut(s)	171, 213
Fsp4HI	GCNGC	2 cut(s)	171, 213
GluI	GCNGC	2 cut(s)	171, 213
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	125
Hin1II	CATG	1 cut(s)	245
HpaII	CCGG	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	152, 170, 212, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
Hsp92II	CATG	1 cut(s)	245
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	71, 187, 193
LpnPI	CCDG	4 cut(s)	138, 159, 176, 201
Lsp1109I	GCAGC	2 cut(s)	182, 224
LweI	GCATC	2 cut(s)	117, 199
MalI	GATC	3 cut(s)	73, 189, 195
MboI	GATC	3 cut(s)	71, 187, 193
MboII	GAAGA	1 cut(s)	253
MluCI	AATT	2 cut(s)	179, 246
MnlI	CCTC	1 cut(s)	79
MroNI	GCCGGC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	173, 215
MspI	CCGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NaeI	GCCGGC	1 cut(s)	126
NdeI	CATATG	2 cut(s)	49, 130
NdeII	GATC	3 cut(s)	71, 187, 193
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	245
NspI	RCATGY	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	172, 214
PspPI	GGNCC	1 cut(s)	8
PvuII	CAGCTG	2 cut(s)	173, 215
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	2 cut(s)	171, 213
Sau3AI	GATC	3 cut(s)	71, 187, 193
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	3 cut(s)	175, 217, 259
SfaNI	GCATC	2 cut(s)	117, 199
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	179, 246
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	179, 246
TseI	GCWGC	2 cut(s)	170, 212
Van91I	CCANNNNNTGG	1 cut(s)	53
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.