Rmu_sc0014419.1_g000001

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014419.1
OG0015697
Physical Location & Seq
Reverse (-)
1 .. 850
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014419.1_g000001.1.cds

Sequence Viewer

Length: 564 bp
atggcagggtcgtcggcctccggcggtgggccgtcgaatcctccgaaaatccttttggcaaagccgggactggtgaccggcgcgccggtggcgggtaaatatgggcgcggcggcagtggggatgagtatacggcgtcgcttcggtcccgcctcccttctatcggatccctcaacctcctctctgattcgtgggagttccacatcgaccgcttcctcccgtttttgactgagaacaccgagttcacggtggtgggggtgattggtccgcctggagtcggcaagtccaccattatgaacgagctttacggcttcgatgccacctcacctgggatgctacctccatttgctatagagactgaagaaggtaaagcaatggcaaggcattgtagtgtgggaattgaacctagggtttctgctgaacgccttatacttcttgacactcagccggtttttagtccttctgttttagctgagatgatgaggcctgatggatcatctaccattcctgttctaaatgctgaatctttatcggccgagttagctcatgaacttatgggaattcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

19.67

Weight (kDa)

4.93

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015697)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33920 FvH4_7g33920
malus_domestica MD07G1308500.v1.1
prunus_persica Prupe.2G325700_v2.0.a1
pyrus_communis pycom07g28070
rosa_chinensis RchiOBHm_Chr1g0384131
rosa_laevigata RLG00000026069
rosa_multiflora Rmu_sc0005139.1_g000016 Rmu_sc0014419.1_g000001
rosa_roxburghii Rroxscaffold_4G00276960
rosa_rugosa Rorug01G0445100
rosa_samantha Rh1AG470600 Rh1BG428000 Rh1CG440700 Rh1DG461000
rosa_wichuraiana Rw1G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 128
AccII CGCG 2 cut(s) 83, 108
AciI CCGC 7 cut(s) 24, 92, 108, 111, 148, 208, 266
AclWI GGATC 3 cut(s) 159, 172, 499
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 558
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 134
AfiI CCNNNNNNNGG 5 cut(s) 27, 92, 161, 275, 327
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 2 cut(s) 268, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AleI CACNNNNGTG 1 cut(s) 248
AluBI AGCT 3 cut(s) 301, 470, 542
AluI AGCT 3 cut(s) 301, 470, 542
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 3 cut(s) 159, 172, 499
AoxI GGCC 4 cut(s) 15, 29, 482, 531
ApoI RAATTY 1 cut(s) 558
AscI GGCGCGCC 1 cut(s) 81
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 3 cut(s) 83, 85, 108
AspS9I GGNCC 3 cut(s) 29, 144, 263
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 3 cut(s) 85, 268, 315
AvaII GGWCC 2 cut(s) 144, 263
AvrII CCTAGG 1 cut(s) 404
BamHI GGATCC 1 cut(s) 164
BccI CCATC 1 cut(s) 482
BceAI ACGGC 3 cut(s) 16, 147, 322
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 270, 327
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 348
BisI GCNGC 2 cut(s) 109, 112
BlnI CCTAGG 1 cut(s) 404
BlsI GCNGC 2 cut(s) 110, 113
Bme1390I CCNGG 3 cut(s) 66, 270, 327
Bme18I GGWCC 2 cut(s) 144, 263
BmgT120I GGNCC 3 cut(s) 29, 144, 263
BmiI GGNNCC 2 cut(s) 146, 166
BmrFI CCNGG 3 cut(s) 66, 270, 327
BmsI GCATC 2 cut(s) 304, 321
BpmI CTGGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 326, 404
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 92, 161, 275, 327
Bse118I RCCGGY 3 cut(s) 77, 85, 445
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 270, 327
BseDI CCNNGG 2 cut(s) 326, 404
BseGI GGATG 2 cut(s) 127, 336
BseLI CCNNNNNNNGG 5 cut(s) 27, 92, 161, 275, 327
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 3 cut(s) 219, 455, 462
BseNI ACTGG 1 cut(s) 75
BsePI GCGCGC 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 167
BseX3I CGGCCG 1 cut(s) 531
Bsh1236I CGCG 2 cut(s) 83, 108
Bsh1285I CGRYCG 2 cut(s) 208, 534
BshFI GGCC 4 cut(s) 17, 31, 484, 533
BsiEI CGRYCG 2 cut(s) 208, 534
BsiSI CCGG 5 cut(s) 21, 65, 78, 86, 446
BslFI GGGAC 2 cut(s) 81, 130
BslI CCNNNNNNNGG 5 cut(s) 27, 92, 161, 275, 327
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 81, 130
BsnI GGCC 4 cut(s) 17, 31, 484, 533
Bsp143I GATC 2 cut(s) 164, 491
BspACI CCGC 7 cut(s) 24, 92, 108, 111, 148, 208, 266
BspANI GGCC 4 cut(s) 17, 31, 484, 533
BspCNI CTCAG 3 cut(s) 220, 454, 463
BspFNI CGCG 2 cut(s) 83, 108
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 146, 166
BspPI GGATC 3 cut(s) 159, 172, 499
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 3 cut(s) 77, 85, 445
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 3 cut(s) 77, 85, 445
BssECI CCNNGG 2 cut(s) 326, 404
BssHII GCGCGC 1 cut(s) 81
BssMI GATC 2 cut(s) 164, 491
BssNAI GTATAC 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 404
Bst1107I GTATAC 1 cut(s) 129
Bst2UI CCWGG 2 cut(s) 270, 327
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 3 cut(s) 228, 441, 471
BstEII GGTNACC 1 cut(s) 73
BstF5I GGATG 2 cut(s) 127, 336
BstFNI CGCG 2 cut(s) 83, 108
BstHHI GCGC 3 cut(s) 83, 85, 108
BstKTI GATC 2 cut(s) 167, 494
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 164, 491
BstMCI CGRYCG 2 cut(s) 208, 534
BstMWI GCNNNNNNNGC 2 cut(s) 89, 539
BstNI CCWGG 2 cut(s) 270, 327
BstPI GGTNACC 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 64, 268, 325
BstSFI CTRYAG 1 cut(s) 348
BstUI CGCG 2 cut(s) 83, 108
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BstZ17I GTATAC 1 cut(s) 129
BstZI CGGCCG 1 cut(s) 531
BsuRI GGCC 4 cut(s) 17, 31, 484, 533
BtsCI GGATG 2 cut(s) 127, 336
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 83
CciI TCATGA 1 cut(s) 544
CfoI GCGC 3 cut(s) 83, 85, 108
Cfr10I RCCGGY 3 cut(s) 77, 85, 445
Cfr13I GGNCC 3 cut(s) 29, 144, 263
CseI GACGC 1 cut(s) 123
CviAII CATG 1 cut(s) 545
DdeI CTNAG 3 cut(s) 228, 441, 471
DpnI GATC 2 cut(s) 166, 493
DpnII GATC 2 cut(s) 164, 491
EaeI YGGCCR 1 cut(s) 531
EagI CGGCCG 1 cut(s) 531
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 404
Eco147I AGGCCT 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 144, 263
Eco52I CGGCCG 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 73
EcoRI GAATTC 1 cut(s) 558
EcoRII CCWGG 2 cut(s) 268, 325
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 1 cut(s) 548
FaiI YATR 7 cut(s) 102, 129, 293, 350, 428, 546, 554
FaqI GGGAC 2 cut(s) 81, 130
FatI CATG 1 cut(s) 544
FauI CCCGC 2 cut(s) 85, 155
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 2 cut(s) 109, 112
FokI GGATG 2 cut(s) 134, 343
Fsp4HI GCNGC 2 cut(s) 109, 112
FspBI CTAG 1 cut(s) 405
GlaI GCGC 3 cut(s) 82, 84, 107
GluI GCNGC 2 cut(s) 109, 112
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 4 cut(s) 17, 31, 484, 533
HapII CCGG 5 cut(s) 21, 65, 78, 86, 446
HgaI GACGC 1 cut(s) 123
HhaI GCGC 3 cut(s) 83, 85, 108
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 548
Hin6I GCGC 3 cut(s) 81, 83, 106
HinP1I GCGC 3 cut(s) 81, 83, 106
HinfI GANTC 4 cut(s) 37, 185, 273, 521
HpaII CCGG 5 cut(s) 21, 65, 78, 86, 446
HphI GGTGA 3 cut(s) 85, 268, 315
Hpy166II GTNNAC 3 cut(s) 129, 243, 285
Hpy188I TCNGA 3 cut(s) 45, 164, 184
Hpy188III TCNNGA 2 cut(s) 434, 545
Hpy8I GTNNAC 3 cut(s) 129, 243, 285
Hpy99I CGWCG 3 cut(s) 16, 37, 139
HpyAV CCTTC 3 cut(s) 165, 356, 468
HpyCH4III ACNGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 539
HpyF3I CTNAG 3 cut(s) 228, 441, 471
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 548
HspAI GCGC 3 cut(s) 81, 83, 106
Kzo9I GATC 2 cut(s) 164, 491
LweI GCATC 2 cut(s) 304, 321
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 166, 493
MboI GATC 2 cut(s) 164, 491
MboII GAAGA 1 cut(s) 371
MflI RGATCY 1 cut(s) 164
MluCI AATT 2 cut(s) 396, 558
MlyI GAGTC 1 cut(s) 282
MslI CAYNNNNRTG 3 cut(s) 248, 290, 387
MspI CCGG 5 cut(s) 21, 65, 78, 86, 446
MspR9I CCNGG 3 cut(s) 66, 270, 327
MvaI CCWGG 2 cut(s) 270, 327
MvnI CGCG 2 cut(s) 83, 108
MwoI GCNNNNNNNGC 2 cut(s) 89, 539
NciI CCSGG 1 cut(s) 66
NdeII GATC 2 cut(s) 164, 491
NlaIII CATG 1 cut(s) 548
NlaIV GGNNCC 2 cut(s) 146, 166
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 248
PagI TCATGA 1 cut(s) 544
PalAI GGCGCGCC 1 cut(s) 81
PauI GCGCGC 1 cut(s) 81
PceI AGGCCT 1 cut(s) 484
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PfeI GAWTC 3 cut(s) 37, 185, 521
PkrI GCNGC 2 cut(s) 110, 113
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 2 cut(s) 268, 325
PspEI GGTNACC 1 cut(s) 73
PspGI CCWGG 2 cut(s) 268, 325
PspN4I GGNNCC 2 cut(s) 146, 166
PspPI GGNCC 3 cut(s) 29, 144, 263
PsrI GAACNNNNNNTAC 4 cut(s) 287, 319, 411, 443
PsuI RGATCY 1 cut(s) 164
PteI GCGCGC 1 cut(s) 81
RseI CAYNNNNRTG 3 cut(s) 248, 290, 387
SatI GCNGC 2 cut(s) 109, 112
Sau3AI GATC 2 cut(s) 164, 491
Sau96I GGNCC 3 cut(s) 29, 144, 263
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 3 cut(s) 66, 270, 327
SetI ASST 9 cut(s) 177, 303, 323, 328, 340, 367, 406, 472, 544
SfaNI GCATC 2 cut(s) 304, 321
SfcI CTRYAG 1 cut(s) 348
SgrAI CRCCGGYG 1 cut(s) 85
SgsI GGCGCGCC 1 cut(s) 81
SinI GGWCC 2 cut(s) 144, 263
SmiMI CAYNNNNRTG 3 cut(s) 248, 290, 387
Sse9I AATT 2 cut(s) 396, 558
SseBI AGGCCT 1 cut(s) 484
SsiI CCGC 7 cut(s) 24, 92, 108, 111, 148, 208, 266
SspMI CTAG 1 cut(s) 405
StuI AGGCCT 1 cut(s) 484
StyD4I CCNGG 3 cut(s) 64, 268, 325
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 3 cut(s) 35, 204, 312
TaqII GACCGA 1 cut(s) 132
TasI AATT 2 cut(s) 396, 558
TauI GCSGC 2 cut(s) 111, 114
TfiI GAWTC 3 cut(s) 37, 185, 521
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 308, 561
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 2 cut(s) 144, 263
XapI RAATTY 1 cut(s) 558
XmaJI CCTAGG 1 cut(s) 404
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.