nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g04690 |
| rosa_chinensis | RchiOBHm_Chr1g0384141 |
| rosa_laevigata | RLG00000026068 |
| rosa_multiflora | Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390 |
| rosa_rugosa | Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300 |
| rosa_samantha | Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200 |
| rosa_wichuraiana | Rw1G040180 Rw1G040190 Rw1G040200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 570 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 689 |
| Acc36I | ACCTGC | 3 cut(s) | 485, 1318, 1375 |
| Acc65I | GGTACC | 1 cut(s) | 1363 |
| AccB1I | GGYRCC | 1 cut(s) | 1363 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1618, 2439 |
| AccI | GTMKAC | 1 cut(s) | 1306 |
| AccII | CGCG | 4 cut(s) | 162, 253, 332, 2868 |
| AccIII | TCCGGA | 2 cut(s) | 121, 272 |
| AciI | CCGC | 8 cut(s) | 162, 166, 253, 332, 374, 612, 2164, 2873 |
| AclI | AACGTT | 1 cut(s) | 704 |
| AclWI | GGATC | 1 cut(s) | 2112 |
| AcoI | YGGCCR | 3 cut(s) | 3, 163, 2430 |
| AcsI | RAATTY | 4 cut(s) | 358, 912, 1285, 2626 |
| AcuI | CTGAAG | 4 cut(s) | 327, 1608, 2172, 2466 |
| AdeI | CACNNNGTG | 1 cut(s) | 1466 |
| AfaI | GTAC | 9 cut(s) | 499, 802, 1116, 1249, 1338, 1365, 1459, 1700, 2837 |
| AfeI | AGCGCT | 3 cut(s) | 640, 1501, 1717 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 128, 1618, 2118, 2119, 2218, 2433, 2439, 2554 |
| AflIII | ACRYGT | 1 cut(s) | 1460 |
| AjiI | CACGTC | 3 cut(s) | 1463, 1658, 1727 |
| AjnI | CCWGG | 8 cut(s) | 903, 916, 1146, 1348, 1444, 1947, 2373, 2432 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1309, 1341 |
| Alw21I | GWGCWC | 3 cut(s) | 35, 111, 1797 |
| Alw26I | GTCTC | 2 cut(s) | 30, 871 |
| AlwI | GGATC | 1 cut(s) | 2112 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 869, 1781 |
| Ama87I | CYCGRG | 1 cut(s) | 522 |
| Aor13HI | TCCGGA | 2 cut(s) | 121, 272 |
| Aor51HI | AGCGCT | 3 cut(s) | 640, 1501, 1717 |
| AoxI | GGCC | 7 cut(s) | 3, 163, 627, 1203, 2430, 2619, 2793 |
| ApeKI | GCWGC | 8 cut(s) | 17, 157, 1331, 1403, 1952, 2228, 2780, 2818 |
| ApoI | RAATTY | 4 cut(s) | 358, 912, 1285, 2626 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1138, 1289 |
| Asp718I | GGTACC | 1 cut(s) | 1363 |
| AspA2I | CCTAGG | 1 cut(s) | 1060 |
| AspLEI | GCGC | 6 cut(s) | 96, 162, 641, 1502, 1718, 2868 |
| AspS9I | GGNCC | 4 cut(s) | 225, 270, 1691, 2619 |
| AsuC2I | CCSGG | 4 cut(s) | 98, 198, 220, 836 |
| AsuHPI | GGTGA | 6 cut(s) | 97, 427, 1460, 1985, 2576, 2896 |
| AvaI | CYCGRG | 1 cut(s) | 522 |
| AvaII | GGWCC | 3 cut(s) | 225, 270, 1691 |
| AvrII | CCTAGG | 1 cut(s) | 1060 |
| BaeGI | GKGCMC | 1 cut(s) | 203 |
| BalI | TGGCCA | 2 cut(s) | 5, 2432 |
| BanI | GGYRCC | 1 cut(s) | 1363 |
| BanII | GRGCYC | 2 cut(s) | 35, 55 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1329, 1361 |
| BbsI | GAAGAC | 6 cut(s) | 249, 333, 531, 945, 1071, 1596 |
| Bbv12I | GWGCWC | 3 cut(s) | 35, 111, 1797 |
| BbvCI | CCTCAGC | 1 cut(s) | 1128 |
| BbvI | GCAGC | 8 cut(s) | 29, 169, 1343, 1415, 1939, 2240, 2792, 2830 |
| BccI | CCATC | 8 cut(s) | 203, 373, 464, 638, 1473, 1616, 2626, 2792 |
| BceAI | ACGGC | 1 cut(s) | 370 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1985, 2019 |
| BciT130I | CCWGG | 8 cut(s) | 905, 918, 1148, 1350, 1446, 1949, 2375, 2434 |
| BclI | TGATCA | 2 cut(s) | 736, 1378 |
| BcnI | CCSGG | 4 cut(s) | 98, 198, 220, 836 |
| BcoDI | GTCTC | 2 cut(s) | 30, 871 |
| BfaI | CTAG | 7 cut(s) | 575, 1061, 1757, 1911, 2255, 2402, 2496 |
| BfmI | CTRYAG | 7 cut(s) | 15, 38, 155, 795, 987, 1329, 1368 |
| BfoI | RGCGCY | 3 cut(s) | 642, 1503, 1719 |
| BfuAI | ACCTGC | 3 cut(s) | 485, 1318, 1375 |
| BglII | AGATCT | 1 cut(s) | 1732 |
| BlnI | CCTAGG | 1 cut(s) | 1060 |
| BlpI | GCTNAGC | 1 cut(s) | 2862 |
| Bme18I | GGWCC | 3 cut(s) | 225, 270, 1691 |
| BmeT110I | CYCGRG | 1 cut(s) | 522 |
| BmgBI | CACGTC | 3 cut(s) | 1463, 1658, 1727 |
| BmgT120I | GGNCC | 4 cut(s) | 225, 270, 1691, 2619 |
| BmiI | GGNNCC | 4 cut(s) | 232, 384, 1365, 1692 |
| BmsI | GCATC | 8 cut(s) | 81, 617, 1831, 2035, 2122, 2347, 2529, 2572 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1689 |
| BpiI | GAAGAC | 6 cut(s) | 249, 333, 531, 945, 1071, 1596 |
| BpmI | CTGGAG | 5 cut(s) | 312, 1893, 2507, 2772, 2784 |
| Bpu10I | CCTNAGC | 3 cut(s) | 369, 890, 1128 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2862 |
| BpuEI | CTTGAG | 6 cut(s) | 791, 1023, 1624, 1636, 2135, 2627 |
| BpuMI | CCSGG | 4 cut(s) | 98, 198, 220, 836 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaI | GGTCTC | 1 cut(s) | 30 |
| BsaWI | WCCGGW | 3 cut(s) | 121, 227, 272 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 267, 279, 297, 309 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 128, 1618, 2118, 2119, 2218, 2433, 2439, 2554 |
| Bse118I | RCCGGY | 1 cut(s) | 1933 |
| Bse1I | ACTGG | 3 cut(s) | 543, 863, 1975 |
| Bse3DI | GCAATG | 4 cut(s) | 175, 751, 1545, 2655 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseAI | TCCGGA | 2 cut(s) | 121, 272 |
| BseBI | CCWGG | 8 cut(s) | 905, 918, 1148, 1350, 1446, 1949, 2375, 2434 |
| BseGI | GGATG | 9 cut(s) | 96, 451, 608, 913, 1003, 1608, 1684, 2086, 2881 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 128, 1618, 2118, 2119, 2218, 2433, 2439, 2554 |
| BseMI | GCAATG | 4 cut(s) | 175, 751, 1545, 2655 |
| BseMII | CTCAG | 6 cut(s) | 615, 939, 1119, 1551, 1821, 2178 |
| BseNI | ACTGG | 3 cut(s) | 543, 863, 1975 |
| BseRI | GAGGAG | 5 cut(s) | 148, 1269, 2012, 2294, 2504 |
| BseSI | GKGCMC | 1 cut(s) | 203 |
| BseX3I | CGGCCG | 1 cut(s) | 163 |
| BseXI | GCAGC | 8 cut(s) | 29, 169, 1343, 1415, 1939, 2240, 2792, 2830 |
| BseYI | CCCAGC | 2 cut(s) | 140, 2505 |
| BsgI | GTGCAG | 2 cut(s) | 1836, 2247 |
| Bsh1236I | CGCG | 4 cut(s) | 162, 253, 332, 2868 |
| Bsh1285I | CGRYCG | 1 cut(s) | 166 |
| BshFI | GGCC | 7 cut(s) | 5, 165, 629, 1205, 2432, 2621, 2795 |
| BshNI | GGYRCC | 1 cut(s) | 1363 |
| BsiEI | CGRYCG | 1 cut(s) | 166 |
| BsiHKAI | GWGCWC | 3 cut(s) | 35, 111, 1797 |
| BsiHKCI | CYCGRG | 1 cut(s) | 522 |
| BsiSI | CCGG | 9 cut(s) | 97, 122, 197, 219, 228, 273, 300, 836, 1934 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 128, 1618, 2118, 2119, 2218, 2433, 2439, 2554 |
| BsmAI | GTCTC | 2 cut(s) | 30, 871 |
| BsmI | GAATGC | 1 cut(s) | 2092 |
| BsnI | GGCC | 7 cut(s) | 5, 165, 629, 1205, 2432, 2621, 2795 |
| Bso31I | GGTCTC | 1 cut(s) | 30 |
| BsoBI | CYCGRG | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 5 cut(s) | 35, 55, 111, 203, 1797 |
| Bsp13I | TCCGGA | 2 cut(s) | 121, 272 |
| Bsp1407I | TGTACA | 2 cut(s) | 1336, 1457 |
| Bsp143I | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2862 |
| Bsp19I | CCATGG | 1 cut(s) | 2427 |
| BspACI | CCGC | 8 cut(s) | 162, 166, 253, 332, 374, 612, 2164, 2873 |
| BspANI | GGCC | 7 cut(s) | 5, 165, 629, 1205, 2432, 2621, 2795 |
| BspCNI | CTCAG | 6 cut(s) | 616, 940, 1120, 1552, 1820, 2179 |
| BspEI | TCCGGA | 2 cut(s) | 121, 272 |
| BspFNI | CGCG | 4 cut(s) | 162, 253, 332, 2868 |
| BspLI | GGNNCC | 4 cut(s) | 232, 384, 1365, 1692 |
| BspMAI | CTGCAG | 4 cut(s) | 19, 159, 1333, 1372 |
| BspMI | ACCTGC | 3 cut(s) | 485, 1318, 1375 |
| BspPI | GGATC | 1 cut(s) | 2112 |
| BspT107I | GGYRCC | 1 cut(s) | 1363 |
| BspTNI | GGTCTC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 4 cut(s) | 175, 751, 1545, 2655 |
| BsrFI | RCCGGY | 1 cut(s) | 1933 |
| BsrGI | TGTACA | 2 cut(s) | 1336, 1457 |
| BsrI | ACTGG | 3 cut(s) | 543, 863, 1975 |
| BssAI | RCCGGY | 1 cut(s) | 1933 |
| BssMI | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| BssNAI | GTATAC | 1 cut(s) | 1307 |
| BssT1I | CCWWGG | 4 cut(s) | 1060, 1612, 2427, 2829 |
| Bst1107I | GTATAC | 1 cut(s) | 1307 |
| Bst2UI | CCWGG | 8 cut(s) | 905, 918, 1148, 1350, 1446, 1949, 2375, 2434 |
| Bst4CI | ACNGT | 6 cut(s) | 72, 961, 1114, 1119, 1321, 2611 |
| Bst6I | CTCTTC | 3 cut(s) | 588, 1300, 2547 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 406, 1850, 1859, 2054 |
| BstAUI | TGTACA | 2 cut(s) | 1336, 1457 |
| BstC8I | GCNNGC | 6 cut(s) | 35, 1395, 1566, 2004, 2008, 2587 |
| BstDSI | CCRYGG | 1 cut(s) | 2427 |
| BstEII | GGTNACC | 1 cut(s) | 322 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2216 |
| BstF5I | GGATG | 9 cut(s) | 96, 451, 608, 913, 1003, 1608, 1684, 2086, 2881 |
| BstFNI | CGCG | 4 cut(s) | 162, 253, 332, 2868 |
| BstH2I | RGCGCY | 3 cut(s) | 642, 1503, 1719 |
| BstHHI | GCGC | 6 cut(s) | 96, 162, 641, 1502, 1718, 2868 |
| BstKTI | GATC | 8 cut(s) | 724, 739, 1381, 1735, 2107, 2401, 2503, 2804 |
| BstMAI | GTCTC | 2 cut(s) | 30, 871 |
| BstMBI | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| BstMCI | CGRYCG | 1 cut(s) | 166 |
| BstNI | CCWGG | 8 cut(s) | 905, 918, 1148, 1350, 1446, 1949, 2375, 2434 |
| BstNSI | RCATGY | 1 cut(s) | 1848 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1689 |
| BstPI | GGTNACC | 1 cut(s) | 322 |
| BstSFI | CTRYAG | 7 cut(s) | 15, 38, 155, 795, 987, 1329, 1368 |
| BstSLI | GKGCMC | 1 cut(s) | 203 |
| BstUI | CGCG | 4 cut(s) | 162, 253, 332, 2868 |
| BstV1I | GCAGC | 8 cut(s) | 29, 169, 1343, 1415, 1939, 2240, 2792, 2830 |
| BstV2I | GAAGAC | 6 cut(s) | 249, 333, 531, 945, 1071, 1596 |
| BstX2I | RGATCY | 2 cut(s) | 1732, 2104 |
| BstYI | RGATCY | 2 cut(s) | 1732, 2104 |
| BstZ17I | GTATAC | 1 cut(s) | 1307 |
| BstZI | CGGCCG | 1 cut(s) | 163 |
| BsuRI | GGCC | 7 cut(s) | 5, 165, 629, 1205, 2432, 2621, 2795 |
| BtgI | CCRYGG | 1 cut(s) | 2427 |
| BtrI | CACGTC | 3 cut(s) | 1463, 1658, 1727 |
| BtsCI | GGATG | 9 cut(s) | 96, 451, 608, 913, 1003, 1608, 1684, 2086, 2881 |
| BtsI | GCAGTG | 2 cut(s) | 201, 2661 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 2661 |
| BveI | ACCTGC | 3 cut(s) | 485, 1318, 1375 |
| Cac8I | GCNNGC | 6 cut(s) | 35, 1395, 1566, 2004, 2008, 2587 |
| CaiI | CAGNNNCTG | 2 cut(s) | 869, 1781 |
| CciNI | GCGGCCGC | 1 cut(s) | 163 |
| CfoI | GCGC | 6 cut(s) | 96, 162, 641, 1502, 1718, 2868 |
| Cfr10I | RCCGGY | 1 cut(s) | 1933 |
| Cfr13I | GGNCC | 4 cut(s) | 225, 270, 1691, 2619 |
| CseI | GACGC | 2 cut(s) | 881, 2786 |
| CsiI | ACCWGGT | 1 cut(s) | 1444 |
| Csp6I | GTAC | 9 cut(s) | 498, 801, 1115, 1248, 1337, 1364, 1458, 1699, 2836 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2637, 2672 |
| CviAII | CATG | 9 cut(s) | 21, 665, 740, 971, 1845, 2270, 2428, 2516, 2922 |
| CviQI | GTAC | 9 cut(s) | 498, 801, 1115, 1248, 1337, 1364, 1458, 1699, 2836 |
| DpnI | GATC | 8 cut(s) | 723, 738, 1380, 1734, 2106, 2400, 2502, 2803 |
| DpnII | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| DraIII | CACNNNGTG | 1 cut(s) | 1466 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 689 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 689 |
| EaeI | YGGCCR | 3 cut(s) | 3, 163, 2430 |
| EagI | CGGCCG | 1 cut(s) | 163 |
| Eam1104I | CTCTTC | 3 cut(s) | 588, 1300, 2547 |
| EarI | CTCTTC | 3 cut(s) | 588, 1300, 2547 |
| Ecl136II | GAGCTC | 1 cut(s) | 33 |
| EclXI | CGGCCG | 1 cut(s) | 163 |
| Eco130I | CCWWGG | 4 cut(s) | 1060, 1612, 2427, 2829 |
| Eco147I | AGGCCT | 1 cut(s) | 1205 |
| Eco24I | GRGCYC | 2 cut(s) | 35, 55 |
| Eco31I | GGTCTC | 1 cut(s) | 30 |
| Eco32I | GATATC | 1 cut(s) | 2319 |
| Eco47I | GGWCC | 3 cut(s) | 225, 270, 1691 |
| Eco47III | AGCGCT | 3 cut(s) | 640, 1501, 1717 |
| Eco52I | CGGCCG | 1 cut(s) | 163 |
| Eco53kI | GAGCTC | 1 cut(s) | 33 |
| Eco57I | CTGAAG | 4 cut(s) | 327, 1608, 2172, 2466 |
| Eco88I | CYCGRG | 1 cut(s) | 522 |
| Eco91I | GGTNACC | 1 cut(s) | 322 |
| EcoICRI | GAGCTC | 1 cut(s) | 33 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2216 |
| EcoO65I | GGTNACC | 1 cut(s) | 322 |
| EcoRI | GAATTC | 2 cut(s) | 358, 1285 |
| EcoRII | CCWGG | 8 cut(s) | 903, 916, 1146, 1348, 1444, 1947, 2373, 2432 |
| EcoRV | GATATC | 1 cut(s) | 2319 |
| EcoT14I | CCWWGG | 4 cut(s) | 1060, 1612, 2427, 2829 |
| EcoT22I | ATGCAT | 2 cut(s) | 610, 1846 |
| EcoT38I | GRGCYC | 2 cut(s) | 35, 55 |
| ErhI | CCWWGG | 4 cut(s) | 1060, 1612, 2427, 2829 |
| FaeI | CATG | 9 cut(s) | 24, 668, 743, 974, 1848, 2273, 2431, 2519, 2925 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1080, 1112 |
| FatI | CATG | 9 cut(s) | 20, 664, 739, 970, 1844, 2269, 2427, 2515, 2921 |
| FauI | CCCGC | 1 cut(s) | 2157 |
| FbaI | TGATCA | 2 cut(s) | 736, 1378 |
| FblI | GTMKAC | 1 cut(s) | 1306 |
| FokI | GGATG | 9 cut(s) | 103, 458, 595, 920, 1010, 1595, 1691, 2093, 2888 |
| FriOI | GRGCYC | 2 cut(s) | 35, 55 |
| FspBI | CTAG | 7 cut(s) | 575, 1061, 1757, 1911, 2255, 2402, 2496 |
| GlaI | GCGC | 6 cut(s) | 95, 161, 640, 1501, 1717, 2867 |
| GsaI | CCCAGC | 2 cut(s) | 144, 2509 |
| GsuI | CTGGAG | 5 cut(s) | 312, 1893, 2507, 2772, 2784 |
| HaeII | RGCGCY | 3 cut(s) | 642, 1503, 1719 |
| HaeIII | GGCC | 7 cut(s) | 5, 165, 629, 1205, 2432, 2621, 2795 |
| HapII | CCGG | 9 cut(s) | 97, 122, 197, 219, 228, 273, 300, 836, 1934 |
| HgaI | GACGC | 2 cut(s) | 881, 2786 |
| HhaI | GCGC | 6 cut(s) | 96, 162, 641, 1502, 1718, 2868 |
| Hin1II | CATG | 9 cut(s) | 24, 668, 743, 974, 1848, 2273, 2431, 2519, 2925 |
| Hin6I | GCGC | 6 cut(s) | 94, 160, 639, 1500, 1716, 2866 |
| HinP1I | GCGC | 6 cut(s) | 94, 160, 639, 1500, 1716, 2866 |
| HincII | GTYRAC | 3 cut(s) | 390, 708, 2536 |
| HindII | GTYRAC | 3 cut(s) | 390, 708, 2536 |
| HpaI | GTTAAC | 2 cut(s) | 390, 708 |
| HpaII | CCGG | 9 cut(s) | 97, 122, 197, 219, 228, 273, 300, 836, 1934 |
| HphI | GGTGA | 6 cut(s) | 97, 427, 1460, 1985, 2576, 2896 |
| Hpy166II | GTNNAC | 7 cut(s) | 68, 390, 708, 1307, 1458, 1460, 2536 |
| Hpy8I | GTNNAC | 7 cut(s) | 68, 390, 708, 1307, 1458, 1460, 2536 |
| Hpy99I | CGWCG | 2 cut(s) | 76, 1467 |
| HpyCH4III | ACNGT | 6 cut(s) | 72, 961, 1114, 1119, 1321, 2611 |
| HpyCH4IV | ACGT | 7 cut(s) | 704, 1187, 1462, 1578, 1657, 1726, 2224 |
| HpySE526I | ACGT | 7 cut(s) | 704, 1187, 1462, 1578, 1657, 1726, 2224 |
| Hsp92II | CATG | 9 cut(s) | 24, 668, 743, 974, 1848, 2273, 2431, 2519, 2925 |
| HspAI | GCGC | 6 cut(s) | 94, 160, 639, 1500, 1716, 2866 |
| Kpn2I | TCCGGA | 2 cut(s) | 121, 272 |
| KpnI | GGTACC | 1 cut(s) | 1367 |
| Ksp22I | TGATCA | 2 cut(s) | 736, 1378 |
| KspAI | GTTAAC | 2 cut(s) | 390, 708 |
| Kzo9I | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| LmnI | GCTCC | 7 cut(s) | 124, 287, 382, 1318, 1800, 1999, 2281 |
| Lsp1109I | GCAGC | 8 cut(s) | 29, 169, 1343, 1415, 1939, 2240, 2792, 2830 |
| LweI | GCATC | 8 cut(s) | 81, 617, 1831, 2035, 2122, 2347, 2529, 2572 |
| MabI | ACCWGGT | 1 cut(s) | 1444 |
| MaeI | CTAG | 7 cut(s) | 575, 1061, 1757, 1911, 2255, 2402, 2496 |
| MaeII | ACGT | 7 cut(s) | 704, 1187, 1462, 1578, 1657, 1726, 2224 |
| MaeIII | GTNAC | 6 cut(s) | 10, 322, 1579, 1904, 1936, 2303 |
| MalI | GATC | 8 cut(s) | 723, 738, 1380, 1734, 2106, 2400, 2502, 2803 |
| MboI | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| MfeI | CAATTG | 1 cut(s) | 58 |
| MflI | RGATCY | 2 cut(s) | 1732, 2104 |
| MhlI | GDGCHC | 5 cut(s) | 35, 55, 111, 203, 1797 |
| MlsI | TGGCCA | 2 cut(s) | 5, 2432 |
| MluNI | TGGCCA | 2 cut(s) | 5, 2432 |
| MlyI | GAGTC | 4 cut(s) | 197, 242, 545, 959 |
| MmeI | TCCRAC | 2 cut(s) | 1340, 1656 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 2432 |
| Mph1103I | ATGCAT | 2 cut(s) | 610, 1846 |
| MroI | TCCGGA | 2 cut(s) | 121, 272 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1138, 1289 |
| MscI | TGGCCA | 2 cut(s) | 5, 2432 |
| MseI | TTAA | 4 cut(s) | 389, 707, 825, 2772 |
| MslI | CAYNNNNRTG | 2 cut(s) | 744, 1839 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 2432 |
| MspA1I | CMGCKG | 3 cut(s) | 614, 1334, 2231 |
| MspI | CCGG | 9 cut(s) | 97, 122, 197, 219, 228, 273, 300, 836, 1934 |
| MunI | CAATTG | 1 cut(s) | 58 |
| Mva1269I | GAATGC | 1 cut(s) | 2092 |
| MvaI | CCWGG | 8 cut(s) | 905, 918, 1148, 1350, 1446, 1949, 2375, 2434 |
| MvnI | CGCG | 4 cut(s) | 162, 253, 332, 2868 |
| NciI | CCSGG | 4 cut(s) | 98, 198, 220, 836 |
| NcoI | CCATGG | 1 cut(s) | 2427 |
| NdeII | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| NlaIII | CATG | 9 cut(s) | 24, 668, 743, 974, 1848, 2273, 2431, 2519, 2925 |
| NlaIV | GGNNCC | 4 cut(s) | 232, 384, 1365, 1692 |
| NmeAIII | GCCGAG | 1 cut(s) | 2647 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| NotI | GCGGCCGC | 1 cut(s) | 163 |
| NsiI | ATGCAT | 2 cut(s) | 610, 1846 |
| NspI | RCATGY | 1 cut(s) | 1848 |
| PaeR7I | CTCGAG | 1 cut(s) | 522 |
| PceI | AGGCCT | 1 cut(s) | 1205 |
| PctI | GAATGC | 1 cut(s) | 2092 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1138, 1289 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1618, 2439 |
| PfoI | TCCNGGA | 1 cut(s) | 1348 |
| PleI | GAGTC | 4 cut(s) | 196, 242, 544, 958 |
| PpsI | GAGTC | 4 cut(s) | 196, 242, 544, 958 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1689 |
| PsiI | TTATAA | 1 cut(s) | 570 |
| Psp124BI | GAGCTC | 1 cut(s) | 35 |
| Psp1406I | AACGTT | 1 cut(s) | 704 |
| Psp6I | CCWGG | 8 cut(s) | 903, 916, 1146, 1348, 1444, 1947, 2373, 2432 |
| PspEI | GGTNACC | 1 cut(s) | 322 |
| PspFI | CCCAGC | 2 cut(s) | 140, 2505 |
| PspGI | CCWGG | 8 cut(s) | 903, 916, 1146, 1348, 1444, 1947, 2373, 2432 |
| PspN4I | GGNNCC | 4 cut(s) | 232, 384, 1365, 1692 |
| PspPI | GGNCC | 4 cut(s) | 225, 270, 1691, 2619 |
| PstI | CTGCAG | 4 cut(s) | 19, 159, 1333, 1372 |
| PstNI | CAGNNNCTG | 2 cut(s) | 869, 1781 |
| PsuI | RGATCY | 2 cut(s) | 1732, 2104 |
| PvuII | CAGCTG | 2 cut(s) | 1334, 2231 |
| RsaI | GTAC | 9 cut(s) | 499, 802, 1116, 1249, 1338, 1365, 1459, 1700, 2837 |
| RsaNI | GTAC | 9 cut(s) | 498, 801, 1115, 1248, 1337, 1364, 1458, 1699, 2836 |
| RseI | CAYNNNNRTG | 2 cut(s) | 744, 1839 |
| SacI | GAGCTC | 1 cut(s) | 35 |
| SaqAI | TTAA | 4 cut(s) | 389, 707, 825, 2772 |
| Sau3AI | GATC | 8 cut(s) | 721, 736, 1378, 1732, 2104, 2398, 2500, 2801 |
| Sau96I | GGNCC | 4 cut(s) | 225, 270, 1691, 2619 |
| SchI | GAGTC | 4 cut(s) | 197, 242, 545, 959 |
| SduI | GDGCHC | 5 cut(s) | 35, 55, 111, 203, 1797 |
| SexAI | ACCWGGT | 1 cut(s) | 1444 |
| SfaNI | GCATC | 8 cut(s) | 81, 617, 1831, 2035, 2122, 2347, 2529, 2572 |
| SfcI | CTRYAG | 7 cut(s) | 15, 38, 155, 795, 987, 1329, 1368 |
| Sfr274I | CTCGAG | 1 cut(s) | 522 |
| SinI | GGWCC | 3 cut(s) | 225, 270, 1691 |
| SlaI | CTCGAG | 1 cut(s) | 522 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 744, 1839 |
| SmlI | CTYRAG | 7 cut(s) | 522, 770, 1038, 1639, 1651, 2114, 2642 |
| SmoI | CTYRAG | 7 cut(s) | 522, 770, 1038, 1639, 1651, 2114, 2642 |
| SseBI | AGGCCT | 1 cut(s) | 1205 |
| SsiI | CCGC | 8 cut(s) | 162, 166, 253, 332, 374, 612, 2164, 2873 |
| SspI | AATATT | 2 cut(s) | 1555, 2206 |
| SspMI | CTAG | 7 cut(s) | 575, 1061, 1757, 1911, 2255, 2402, 2496 |
| SstI | GAGCTC | 1 cut(s) | 35 |
| StuI | AGGCCT | 1 cut(s) | 1205 |
| StyI | CCWWGG | 4 cut(s) | 1060, 1612, 2427, 2829 |
| TaaI | ACNGT | 6 cut(s) | 72, 961, 1114, 1119, 1321, 2611 |
| TaiI | ACGT | 7 cut(s) | 707, 1190, 1465, 1581, 1660, 1729, 2227 |
| TaqI | TCGA | 7 cut(s) | 103, 186, 523, 693, 846, 1477, 1508 |
| TatI | WGTACW | 5 cut(s) | 1114, 1336, 1457, 1698, 2835 |
| TauI | GCSGC | 4 cut(s) | 165, 168, 335, 376 |
| Tru1I | TTAA | 4 cut(s) | 389, 707, 825, 2772 |
| Tru9I | TTAA | 4 cut(s) | 389, 707, 825, 2772 |
| TscAI | CASTG | 2 cut(s) | 208, 2661 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 8 cut(s) | 17, 157, 1331, 1403, 1952, 2228, 2780, 2818 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspGWI | ACGGA | 3 cut(s) | 1683, 2428, 2537 |
| TspRI | CASTG | 2 cut(s) | 208, 2661 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1618, 2439 |
| VpaK11BI | GGWCC | 3 cut(s) | 225, 270, 1691 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2216 |
| XapI | RAATTY | 4 cut(s) | 358, 912, 1285, 2626 |
| XbaI | TCTAGA | 1 cut(s) | 2401 |
| XceI | RCATGY | 1 cut(s) | 1848 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1615 |
| XhoI | CTCGAG | 1 cut(s) | 522 |
| XmaJI | CCTAGG | 1 cut(s) | 1060 |
| XmiI | GTMKAC | 1 cut(s) | 1306 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1138, 1289 |
| XspI | CTAG | 7 cut(s) | 575, 1061, 1757, 1911, 2255, 2402, 2496 |
| Zsp2I | ATGCAT | 2 cut(s) | 610, 1846 |