rRNA processing
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g04690 |
| rosa_chinensis | RchiOBHm_Chr1g0384141 |
| rosa_laevigata | RLG00000026068 |
| rosa_multiflora | Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390 |
| rosa_rugosa | Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300 |
| rosa_samantha | Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200 |
| rosa_wichuraiana | Rw1G040180 Rw1G040190 Rw1G040200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 18 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AcsI | RAATTY | 3 cut(s) | 37, 410, 422 |
| AfaI | GTAC | 1 cut(s) | 226 |
| AgsI | TTSAA | 6 cut(s) | 88, 158, 184, 305, 384, 416 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 408, 440 |
| AluBI | AGCT | 1 cut(s) | 442 |
| AluI | AGCT | 1 cut(s) | 442 |
| Alw26I | GTCTC | 2 cut(s) | 290, 319 |
| AlwI | GGATC | 1 cut(s) | 105 |
| Ama87I | CYCGRG | 1 cut(s) | 316 |
| AoxI | GGCC | 1 cut(s) | 166 |
| ApoI | RAATTY | 3 cut(s) | 37, 410, 422 |
| AvaI | CYCGRG | 1 cut(s) | 316 |
| BccI | CCATC | 1 cut(s) | 353 |
| BcoDI | GTCTC | 2 cut(s) | 290, 319 |
| BfmI | CTRYAG | 1 cut(s) | 328 |
| BmeT110I | CYCGRG | 1 cut(s) | 316 |
| BmrI | ACTGGG | 1 cut(s) | 196 |
| BmuI | ACTGGG | 1 cut(s) | 196 |
| BoxI | GACNNNNGTC | 1 cut(s) | 206 |
| BsaI | GGTCTC | 1 cut(s) | 290 |
| Bse1I | ACTGG | 1 cut(s) | 191 |
| BseGI | GGATG | 2 cut(s) | 196, 379 |
| BseNI | ACTGG | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 18 |
| BshFI | GGCC | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 1 cut(s) | 316 |
| BsmAI | GTCTC | 2 cut(s) | 290, 319 |
| BsmBI | CGTCTC | 1 cut(s) | 319 |
| BsnI | GGCC | 1 cut(s) | 168 |
| Bso31I | GGTCTC | 1 cut(s) | 290 |
| BsoBI | CYCGRG | 1 cut(s) | 316 |
| Bsp143I | GATC | 2 cut(s) | 48, 97 |
| BspANI | GGCC | 1 cut(s) | 168 |
| BspFNI | CGCG | 1 cut(s) | 18 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BspTNI | GGTCTC | 1 cut(s) | 290 |
| BsrI | ACTGG | 1 cut(s) | 191 |
| BssMI | GATC | 2 cut(s) | 48, 97 |
| Bst4CI | ACNGT | 4 cut(s) | 26, 79, 151, 208 |
| Bst6I | CTCTTC | 1 cut(s) | 105 |
| BstF5I | GGATG | 2 cut(s) | 196, 379 |
| BstFNI | CGCG | 1 cut(s) | 18 |
| BstKTI | GATC | 2 cut(s) | 51, 100 |
| BstMAI | GTCTC | 2 cut(s) | 290, 319 |
| BstMBI | GATC | 2 cut(s) | 48, 97 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 174 |
| BstNSI | RCATGY | 1 cut(s) | 282 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 206 |
| BstSFI | CTRYAG | 1 cut(s) | 328 |
| BstUI | CGCG | 1 cut(s) | 18 |
| BstX2I | RGATCY | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 97 |
| BsuRI | GGCC | 1 cut(s) | 168 |
| BtsCI | GGATG | 2 cut(s) | 196, 379 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 291 |
| CciI | TCATGA | 1 cut(s) | 394 |
| Csp6I | GTAC | 1 cut(s) | 225 |
| CviAII | CATG | 7 cut(s) | 164, 174, 236, 279, 340, 364, 395 |
| CviJI | RGCY | 3 cut(s) | 168, 321, 442 |
| CviKI_1 | RGCY | 3 cut(s) | 168, 321, 442 |
| CviQI | GTAC | 1 cut(s) | 225 |
| DpnI | GATC | 2 cut(s) | 50, 99 |
| DpnII | GATC | 2 cut(s) | 48, 97 |
| Eam1104I | CTCTTC | 1 cut(s) | 105 |
| EarI | CTCTTC | 1 cut(s) | 105 |
| Eco31I | GGTCTC | 1 cut(s) | 290 |
| Eco32I | GATATC | 1 cut(s) | 241 |
| Eco88I | CYCGRG | 1 cut(s) | 316 |
| EcoRV | GATATC | 1 cut(s) | 241 |
| Esp3I | CGTCTC | 1 cut(s) | 319 |
| FaeI | CATG | 7 cut(s) | 167, 177, 239, 282, 343, 367, 398 |
| FatI | CATG | 7 cut(s) | 163, 173, 235, 278, 339, 363, 394 |
| FokI | GGATG | 2 cut(s) | 203, 386 |
| HaeIII | GGCC | 1 cut(s) | 168 |
| Hin1II | CATG | 7 cut(s) | 167, 177, 239, 282, 343, 367, 398 |
| HinfI | GANTC | 3 cut(s) | 68, 115, 158 |
| Hpy188I | TCNGA | 4 cut(s) | 73, 97, 120, 350 |
| Hpy188III | TCNNGA | 3 cut(s) | 88, 130, 395 |
| HpyCH4III | ACNGT | 4 cut(s) | 26, 79, 151, 208 |
| HpyCH4IV | ACGT | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 2 cut(s) | 105, 215 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 174 |
| HpySE526I | ACGT | 1 cut(s) | 223 |
| Hsp92II | CATG | 7 cut(s) | 167, 177, 239, 282, 343, 367, 398 |
| Kzo9I | GATC | 2 cut(s) | 48, 97 |
| LpnPI | CCDG | 7 cut(s) | 29, 115, 172, 235, 260, 369, 460 |
| MaeII | ACGT | 1 cut(s) | 223 |
| MalI | GATC | 2 cut(s) | 50, 99 |
| MboI | GATC | 2 cut(s) | 48, 97 |
| MboII | GAAGA | 2 cut(s) | 122, 145 |
| MflI | RGATCY | 1 cut(s) | 97 |
| MluCI | AATT | 4 cut(s) | 37, 179, 410, 422 |
| MmeI | TCCRAC | 1 cut(s) | 75 |
| MnlI | CCTC | 4 cut(s) | 133, 187, 364, 444 |
| MseI | TTAA | 1 cut(s) | 258 |
| MvnI | CGCG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 174 |
| NdeII | GATC | 2 cut(s) | 48, 97 |
| NlaIII | CATG | 7 cut(s) | 167, 177, 239, 282, 343, 367, 398 |
| NmeAIII | GCCGAG | 1 cut(s) | 267 |
| NspI | RCATGY | 1 cut(s) | 282 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PfeI | GAWTC | 3 cut(s) | 68, 115, 158 |
| PshAI | GACNNNNGTC | 1 cut(s) | 206 |
| PsuI | RGATCY | 1 cut(s) | 97 |
| RsaI | GTAC | 1 cut(s) | 226 |
| RsaNI | GTAC | 1 cut(s) | 225 |
| SaqAI | TTAA | 1 cut(s) | 258 |
| Sau3AI | GATC | 2 cut(s) | 48, 97 |
| SetI | ASST | 4 cut(s) | 144, 226, 436, 444 |
| SfcI | CTRYAG | 1 cut(s) | 328 |
| Sse9I | AATT | 4 cut(s) | 37, 179, 410, 422 |
| TaaI | ACNGT | 4 cut(s) | 26, 79, 151, 208 |
| TaiI | ACGT | 1 cut(s) | 226 |
| TaqI | TCGA | 2 cut(s) | 51, 436 |
| TasI | AATT | 4 cut(s) | 37, 179, 410, 422 |
| TfiI | GAWTC | 3 cut(s) | 68, 115, 158 |
| Tru1I | TTAA | 1 cut(s) | 258 |
| Tru9I | TTAA | 1 cut(s) | 258 |
| TscAI | CASTG | 2 cut(s) | 217, 298 |
| TspDTI | ATGAA | 2 cut(s) | 162, 391 |
| TspRI | CASTG | 2 cut(s) | 217, 298 |
| XapI | RAATTY | 3 cut(s) | 37, 410, 422 |
| XceI | RCATGY | 1 cut(s) | 282 |