Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Reverse (-)

66473887 .. 66485903

Gene Structure 12017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG461100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAAAAGAGCGAGAGCGATAACAGTATGGACGAAAATTCGCAGAAGGTCGACAACACTGGCTACGAATCAATGACTCTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCAAATTGAACTGGGATGAGTGTAAGATGACTGTTGGTGCAACAGAACGTACCCTGGACCGAAGGATCATTTACAGGGGTGCACGTGCTCTCTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTTGAACCAATCGTCTCCGGCAGTGTCCATAGTGATGTCATGAAAATTACAATACCAGATGGCATGACTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATATTCAAATTTGAAGACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCTTGAAGCAGCTGTTGTTGTTCTTTCCGATAAAGCCGGGTCAACAAGTATAGTGAGGAATCTTGTGACTAGTTGTCTTCTTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.59

Weight (kDa)

4.74

Isoelectric Point (pI)

26.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	248, 545
AcsI	RAATTY	3 cut(s)	37, 410, 422
AcvI	CACGTG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	226
AgsI	TTSAA	8 cut(s)	88, 158, 184, 305, 384, 409, 416, 467
AhdI	GACNNNNNGTC	1 cut(s)	534
AhlI	ACTAGT	1 cut(s)	530
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	2 cut(s)	442, 473
AluI	AGCT	2 cut(s)	442, 473
Alw21I	GWGCWC	2 cut(s)	259, 265
Alw26I	GTCTC	2 cut(s)	104, 319
Alw44I	GTGCAC	1 cut(s)	255
AlwI	GGATC	2 cut(s)	248, 545
AoxI	GGCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	3 cut(s)	37, 410, 422
AspS9I	GGNCC	1 cut(s)	232
AsuC2I	CCSGG	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	259
BbrPI	CACGTG	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	423, 530, 570
Bbv12I	GWGCWC	2 cut(s)	259, 265
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	104, 319
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	1 cut(s)	531
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	2 cut(s)	230, 499
Bme18I	GGWCC	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	230, 499
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	3 cut(s)	423, 530, 570
BpuMI	CCSGG	1 cut(s)	499
BsaAI	YACGTR	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	64, 191
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	196, 379
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	64, 191
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	2 cut(s)	259, 265
BsiSI	CCGG	2 cut(s)	318, 498
BsmAI	GTCTC	2 cut(s)	104, 319
BsmBI	CGTCTC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	259, 265
Bsp143I	GATC	2 cut(s)	240, 550
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	3 cut(s)	339, 394, 574
BspPI	GGATC	2 cut(s)	248, 545
BspTNI	GGTCTC	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	64, 191
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	240, 550
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	26, 151, 208
Bst6I	CTCTTC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	260
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	196, 379
BstKTI	GATC	2 cut(s)	243, 553
BstMAI	GTCTC	2 cut(s)	104, 319
BstMBI	GATC	2 cut(s)	240, 550
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	228, 497
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	3 cut(s)	423, 530, 570
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	196, 379
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	57, 291, 328
CciI	TCATGA	3 cut(s)	339, 394, 574
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	7 cut(s)	164, 174, 279, 340, 364, 395, 575
CviJI	RGCY	5 cut(s)	63, 168, 442, 473, 497
CviKI_1	RGCY	5 cut(s)	63, 168, 442, 473, 497
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	242, 552
DpnII	GATC	2 cut(s)	240, 550
DriI	GACNNNNNGTC	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	105
Eam1105I	GACNNNNNGTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	7 cut(s)	167, 177, 282, 343, 367, 398, 578
FatI	CATG	7 cut(s)	163, 173, 278, 339, 363, 394, 574
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	203, 386
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	318, 498
Hin1II	CATG	7 cut(s)	167, 177, 282, 343, 367, 398, 578
HincII	GTYRAC	2 cut(s)	52, 504
HindII	GTYRAC	2 cut(s)	52, 504
HinfI	GANTC	5 cut(s)	68, 76, 115, 158, 520
HpaII	CCGG	2 cut(s)	318, 498
Hpy166II	GTNNAC	3 cut(s)	52, 257, 504
Hpy188I	TCNGA	2 cut(s)	120, 490
Hpy188III	TCNNGA	6 cut(s)	88, 130, 340, 395, 464, 575
Hpy8I	GTNNAC	3 cut(s)	52, 257, 504
HpyAV	CCTTC	2 cut(s)	40, 231
HpyCH4III	ACNGT	3 cut(s)	26, 151, 208
HpyCH4IV	ACGT	2 cut(s)	223, 259
HpyCH4V	TGCA	4 cut(s)	105, 177, 215, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	2 cut(s)	223, 259
Hsp92II	CATG	7 cut(s)	167, 177, 282, 343, 367, 398, 578
Kzo9I	GATC	2 cut(s)	240, 550
Lsp1109I	GCAGC	1 cut(s)	482
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	2 cut(s)	223, 259
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	2 cut(s)	242, 552
MboI	GATC	2 cut(s)	240, 550
MboII	GAAGA	5 cut(s)	122, 145, 428, 530, 575
MhlI	GDGCHC	2 cut(s)	259, 265
MluCI	AATT	6 cut(s)	37, 179, 345, 410, 422, 578
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	133, 364, 444, 510
MseI	TTAA	1 cut(s)	598
MslI	CAYNNNNRTG	2 cut(s)	333, 573
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	318, 498
MspR9I	CCNGG	2 cut(s)	230, 499
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	499
NdeII	GATC	2 cut(s)	240, 550
NlaIII	CATG	7 cut(s)	167, 177, 282, 343, 367, 398, 578
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	282
PagI	TCATGA	3 cut(s)	339, 394, 574
PfeI	GAWTC	4 cut(s)	68, 115, 158, 520
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	2 cut(s)	333, 573
SalI	GTCGAC	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	598
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	2 cut(s)	240, 550
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	230, 499
SduI	GDGCHC	2 cut(s)	259, 265
SetI	ASST	7 cut(s)	51, 144, 226, 262, 436, 444, 475
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	2 cut(s)	333, 573
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	6 cut(s)	37, 179, 345, 410, 422, 578
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	228, 497
TaaI	ACNGT	3 cut(s)	26, 151, 208
TaiI	ACGT	2 cut(s)	226, 262
TaqI	TCGA	2 cut(s)	51, 436
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	6 cut(s)	37, 179, 345, 410, 422, 578
TfiI	GAWTC	4 cut(s)	68, 115, 158, 520
Tru1I	TTAA	1 cut(s)	598
Tru9I	TTAA	1 cut(s)	598
TscAI	CASTG	3 cut(s)	64, 298, 328
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	6 cut(s)	162, 356, 391, 563, 576, 591
TspRI	CASTG	3 cut(s)	64, 298, 328
VneI	GTGCAC	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	3 cut(s)	37, 410, 422
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.