Rw1G040200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004243
Physical Location & Seq
Forward (+)
67569221 .. 67571419
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040200.1

Sequence Viewer

Length: 666 bp
ATGAATGCCTATAAATACCCTCCTCTACCAAATCCTCCAAAATACGGAGACGTCTGGAATTCCAAGACGATGGAAAAGAGCGAGAGCGATAACAGCATGGGCGAAAATTCGCAGGAGATTTACGAATCTAAAACTGTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTTGAAGCAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTCACTGCAACAGAACGTACCGAAGGTGGTCTTCTTCAAGATGGCTTTGATAGGGGTTTTAATGCTCTCTTTGTTCTGGCATGTGGTCTCGGCACTGAATGGGTTGAACCAATCGTCTCGGGCTGTATCTATAGTGATGTCATGTATATCAGAATACCAGATGGCATGAGTGAGGATGATTTTTCAAGCAAGTATCAAGATTTCATATACAAATTTGAACACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCTTGAAGCATCTGTTGTCGTCCTTTCCGATAAAGCCGGGTCAACAAGTACAGTGAGGAATCTTGTGCTTAGTTGTCTAAATGACGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

25.2

Weight (kDa)

4.53

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
AclWI GGATC 1 cut(s) 611
AcsI RAATTY 4 cut(s) 58, 106, 476, 488
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 283, 577
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 9 cut(s) 145, 203, 215, 241, 302, 371, 450, 482, 533
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AluBI AGCT 1 cut(s) 508
AluI AGCT 1 cut(s) 508
Alw26I GTCTC 4 cut(s) 42, 161, 356, 385
AlwI GGATC 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 1 cut(s) 223
ApoI RAATTY 4 cut(s) 58, 106, 476, 488
AsuC2I CCSGG 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 287, 636
BccI CCATC 3 cut(s) 64, 299, 419
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 4 cut(s) 42, 161, 356, 385
BfmI CTRYAG 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 565
BmeT110I CYCGRG 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 565
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 545
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 287, 636
BpuMI CCSGG 1 cut(s) 565
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 2 cut(s) 161, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 253, 445
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 12
BshFI GGCC 1 cut(s) 225
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 1 cut(s) 564
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 4 cut(s) 42, 161, 356, 385
BsmBI CGTCTC 2 cut(s) 42, 385
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 225
Bso31I GGTCTC 2 cut(s) 161, 356
BsoBI CYCGRG 1 cut(s) 382
Bsp143I GATC 2 cut(s) 616, 658
BspANI GGCC 1 cut(s) 225
BspHI TCATGA 1 cut(s) 640
BspPI GGATC 1 cut(s) 611
BspTNI GGTCTC 2 cut(s) 161, 356
BsrI ACTGG 1 cut(s) 248
BssMI GATC 2 cut(s) 616, 658
BssNI GRCGYC 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 136, 265, 580
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 596
BstF5I GGATG 2 cut(s) 253, 445
BstKTI GATC 2 cut(s) 619, 661
BstMAI GTCTC 4 cut(s) 42, 161, 356, 385
BstMBI GATC 2 cut(s) 616, 658
BstMWI GCNNNNNNNGC 2 cut(s) 93, 231
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 563
BstSFI CTRYAG 1 cut(s) 394
BstV2I GAAGAC 2 cut(s) 287, 636
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 2 cut(s) 253, 445
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 3 cut(s) 267, 357, 585
CciI TCATGA 1 cut(s) 640
Csp6I GTAC 2 cut(s) 282, 576
CviAII CATG 7 cut(s) 97, 221, 231, 345, 406, 430, 641
CviJI RGCY 5 cut(s) 225, 309, 387, 508, 563
CviKI_1 RGCY 5 cut(s) 225, 309, 387, 508, 563
CviQI GTAC 2 cut(s) 282, 576
DdeI CTNAG 1 cut(s) 596
DpnI GATC 2 cut(s) 618, 660
DpnII GATC 2 cut(s) 616, 658
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco31I GGTCTC 2 cut(s) 161, 356
Eco88I CYCGRG 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 58
Esp3I CGTCTC 2 cut(s) 42, 385
FaeI CATG 7 cut(s) 100, 224, 234, 348, 409, 433, 644
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 7 cut(s) 96, 220, 230, 344, 405, 429, 640
FokI GGATG 2 cut(s) 260, 452
HaeIII GGCC 1 cut(s) 225
HapII CCGG 1 cut(s) 564
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 7 cut(s) 100, 224, 234, 348, 409, 433, 644
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HinfI GANTC 4 cut(s) 125, 172, 215, 586
HpaII CCGG 1 cut(s) 564
Hpy166II GTNNAC 1 cut(s) 570
Hpy188I TCNGA 3 cut(s) 177, 416, 556
Hpy188III TCNNGA 7 cut(s) 55, 145, 187, 302, 461, 530, 641
Hpy8I GTNNAC 1 cut(s) 570
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 136, 265, 580
HpyCH4IV ACGT 2 cut(s) 51, 280
HpyCH4V TGCA 2 cut(s) 162, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 231
HpyF3I CTNAG 1 cut(s) 596
HpySE526I ACGT 2 cut(s) 51, 280
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 7 cut(s) 100, 224, 234, 348, 409, 433, 644
Kzo9I GATC 2 cut(s) 616, 658
LpnPI CCDG 9 cut(s) 40, 98, 137, 172, 229, 326, 435, 526, 577
LweI GCATC 1 cut(s) 545
MaeII ACGT 2 cut(s) 51, 280
MaeIII GTNAC 1 cut(s) 265
MalI GATC 2 cut(s) 618, 660
MboI GATC 2 cut(s) 616, 658
MboII GAAGA 5 cut(s) 179, 202, 287, 290, 641
MluCI AATT 6 cut(s) 58, 106, 236, 476, 488, 644
MnlI CCTC 7 cut(s) 30, 33, 45, 190, 430, 510, 576
MseI TTAA 2 cut(s) 324, 664
MslI CAYNNNNRTG 1 cut(s) 639
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 93, 231
NciI CCSGG 1 cut(s) 565
NdeII GATC 2 cut(s) 616, 658
NlaIII CATG 7 cut(s) 100, 224, 234, 348, 409, 433, 644
NmeAIII GCCGAG 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 348
PagI TCATGA 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 4 cut(s) 125, 172, 215, 586
RsaI GTAC 2 cut(s) 283, 577
RsaNI GTAC 2 cut(s) 282, 576
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 2 cut(s) 324, 664
Sau3AI GATC 2 cut(s) 616, 658
ScrFI CCNGG 1 cut(s) 565
SetI ASST 6 cut(s) 54, 201, 283, 292, 502, 510
SfaNI GCATC 1 cut(s) 545
SfcI CTRYAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 639
Sse9I AATT 6 cut(s) 58, 106, 236, 476, 488, 644
StyD4I CCNGG 1 cut(s) 563
TaaI ACNGT 3 cut(s) 136, 265, 580
TaiI ACGT 2 cut(s) 54, 283
TaqI TCGA 1 cut(s) 502
TasI AATT 6 cut(s) 58, 106, 236, 476, 488, 644
TatI WGTACW 1 cut(s) 575
TfiI GAWTC 4 cut(s) 125, 172, 215, 586
Tru1I TTAA 2 cut(s) 324, 664
Tru9I TTAA 2 cut(s) 324, 664
TscAI CASTG 3 cut(s) 274, 364, 585
TseFI GTSAC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 6 cut(s) 17, 219, 457, 629, 642, 657
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 3 cut(s) 274, 364, 585
XapI RAATTY 4 cut(s) 58, 106, 476, 488
XceI RCATGY 1 cut(s) 348
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.