Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Forward (+)

43335 .. 45547

Gene Structure 2213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgcctataaatactctcttccactaccaaaatcctccaaaatacggagacgtctggaattcgaagacgatggaaaagagcgagagcgataacagtatggacgataattcgcagaaggtcgacaacactggatatgaatcaatgactctgttattcaagaagcagggtctctgcaaagaagagaatctgaaccaagtctggaagaaggaggtggaaacagtctttgaatctcatggcctttcatgcgaattgaactgggatgagtgtaagatgactgttagtgcaacagaacgtaccctggaccgaaggatcatttacaggggtgcacgtgctctctgtgttctggcatgtggtcttggcactgaatgggttgaaccaatcgtctccggcagtgtccatagtgatgtcatgaaaattacaataccagatggcatgactgaggatgatttttcaagcaagtatcatgatttcatattcaaatttgaagacaaatttggactacctcgaaagctgtcctgctttgttctttatcaagaagcagctgttgttgttctttccgataaattcgggtcaacaagtatagtcaggaaccttgtgactagttgtcttcttggcgatgatccttttgatgaagaccattttcatgaattgttccttgatgatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.38

Weight (kDa)

4.75

Isoelectric Point (pI)

31.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	120
AclWI	GGATC	2 cut(s)	317, 614
AcsI	RAATTY	4 cut(s)	58, 479, 491, 563
AcvI	CACGTG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	7 cut(s)	157, 227, 253, 374, 453, 478, 485
AhdI	GACNNNNNGTC	1 cut(s)	603
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	1 cut(s)	297
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	2 cut(s)	511, 542
AluI	AGCT	2 cut(s)	511, 542
Alw21I	GWGCWC	2 cut(s)	328, 334
Alw26I	GTCTC	3 cut(s)	42, 173, 388
Alw44I	GTGCAC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	317, 614
AoxI	GGCC	1 cut(s)	235
ApaLI	GTGCAC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	4 cut(s)	58, 479, 491, 563
AspS9I	GGNCC	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	329
BbsI	GAAGAC	4 cut(s)	71, 492, 599, 639
Bbv12I	GWGCWC	2 cut(s)	328, 334
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	2 cut(s)	64, 422
BciT130I	CCWGG	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	42, 173, 388
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	1 cut(s)	600
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	301
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	1 cut(s)	299
BmrI	ACTGGG	1 cut(s)	265
BmuI	ACTGGG	1 cut(s)	265
BpiI	GAAGAC	4 cut(s)	71, 492, 599, 639
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	133, 260
Bse8I	GATNNNNATC	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	265, 448
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	2 cut(s)	133, 260
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	551
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	2 cut(s)	328, 334
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	42, 173, 388
BsmBI	CGTCTC	2 cut(s)	42, 388
BsnI	GGCC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	328, 334
Bsp143I	GATC	2 cut(s)	309, 619
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	3 cut(s)	408, 463, 643
BspLI	GGNNCC	1 cut(s)	590
BspPI	GGATC	2 cut(s)	317, 614
BspT104I	TTCGAA	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	133, 260
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	309, 619
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	95, 220, 277
Bst6I	CTCTTC	2 cut(s)	23, 174
BstACI	GRCGYC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	265, 448
BstKTI	GATC	2 cut(s)	312, 622
BstMAI	GTCTC	3 cut(s)	42, 173, 388
BstMBI	GATC	2 cut(s)	309, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	551
BstV2I	GAAGAC	4 cut(s)	71, 492, 599, 639
BsuRI	GGCC	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	265, 448
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	3 cut(s)	126, 360, 397
CciI	TCATGA	3 cut(s)	408, 463, 643
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	7 cut(s)	233, 243, 348, 409, 433, 464, 644
CviJI	RGCY	3 cut(s)	237, 511, 542
CviKI_1	RGCY	3 cut(s)	237, 511, 542
CviQI	GTAC	1 cut(s)	294
DdeI	CTNAG	1 cut(s)	438
DpnI	GATC	2 cut(s)	311, 621
DpnII	GATC	2 cut(s)	309, 619
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	2 cut(s)	23, 174
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	2 cut(s)	23, 174
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	301
Eco72I	CACGTG	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	297
Esp3I	CGTCTC	2 cut(s)	42, 388
FaeI	CATG	7 cut(s)	236, 246, 351, 412, 436, 467, 647
FatI	CATG	7 cut(s)	232, 242, 347, 408, 432, 463, 643
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	2 cut(s)	272, 455
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	1 cut(s)	600
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	7 cut(s)	236, 246, 351, 412, 436, 467, 647
HincII	GTYRAC	2 cut(s)	121, 573
HindII	GTYRAC	2 cut(s)	121, 573
HinfI	GANTC	4 cut(s)	137, 145, 184, 227
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	3 cut(s)	121, 326, 573
Hpy188I	TCNGA	2 cut(s)	189, 559
Hpy188III	TCNNGA	8 cut(s)	55, 157, 199, 409, 464, 533, 586, 644
Hpy8I	GTNNAC	3 cut(s)	121, 326, 573
HpyAV	CCTTC	3 cut(s)	109, 199, 300
HpyCH4III	ACNGT	3 cut(s)	95, 220, 277
HpyCH4IV	ACGT	3 cut(s)	51, 292, 328
HpyCH4V	TGCA	3 cut(s)	174, 284, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	438
HpySE526I	ACGT	3 cut(s)	51, 292, 328
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	7 cut(s)	236, 246, 351, 412, 436, 467, 647
Kzo9I	GATC	2 cut(s)	309, 619
Lsp1109I	GCAGC	1 cut(s)	551
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	3 cut(s)	51, 292, 328
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	2 cut(s)	311, 621
MboI	GATC	2 cut(s)	309, 619
MboII	GAAGA	7 cut(s)	10, 76, 191, 214, 497, 599, 644
MhlI	GDGCHC	2 cut(s)	328, 334
MluCI	AATT	8 cut(s)	58, 106, 248, 414, 479, 491, 563, 647
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	45, 202, 433, 513
MseI	TTAA	1 cut(s)	667
MslI	CAYNNNNRTG	2 cut(s)	402, 642
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	243
NdeII	GATC	2 cut(s)	309, 619
NlaIII	CATG	7 cut(s)	236, 246, 351, 412, 436, 467, 647
NlaIV	GGNNCC	1 cut(s)	590
NmuCI	GTSAC	1 cut(s)	595
NspI	RCATGY	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	62
PagI	TCATGA	3 cut(s)	408, 463, 643
PfeI	GAWTC	3 cut(s)	137, 184, 227
PkrI	GCNGC	1 cut(s)	541
PleI	GAGTC	1 cut(s)	139
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	297
PspCI	CACGTG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
RseI	CAYNNNNRTG	2 cut(s)	402, 642
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	2 cut(s)	309, 619
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	2 cut(s)	328, 334
SetI	ASST	9 cut(s)	54, 120, 213, 295, 331, 505, 513, 544, 594
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	2 cut(s)	402, 642
SpeI	ACTAGT	1 cut(s)	599
Sse9I	AATT	8 cut(s)	58, 106, 248, 414, 479, 491, 563, 647
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	95, 220, 277
TaiI	ACGT	3 cut(s)	54, 295, 331
TaqI	TCGA	3 cut(s)	62, 120, 505
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	8 cut(s)	58, 106, 248, 414, 479, 491, 563, 647
TfiI	GAWTC	3 cut(s)	137, 184, 227
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	3 cut(s)	133, 367, 397
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	7 cut(s)	150, 231, 425, 460, 632, 645, 660
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	133, 367, 397
VneI	GTGCAC	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	4 cut(s)	58, 479, 491, 563
XceI	RCATGY	1 cut(s)	351
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	600
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.