Rw1G040180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004243
Physical Location & Seq
Forward (+)
67547938 .. 67549629
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040180.1

Sequence Viewer

Length: 645 bp
ATGCCTATAAATACCCTTCCAAATCCTCCAAAATACGGAGACGTCTGGAATTCGAAGACGACGGAAAAGAGCGAGAGCGATAACAGCATGGGCGAAAATTCGCAGGAGATTTACGAATCTGAAACTGTGTTATTCAAGAAGCAGGAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTTAGTGCAACAGAACGTACTGAAGGTGGTCTTCTTCAAGATGGTTTTGACAGGGGTTTTAATGCTCTCTTTGTTCTGGCATGTGGTCTCGGCACTGAATGGGTTGAACCAATCGTCTCCGGTAGTGTCTATAGTGATGTCATGAATATTATAATACCAAATGGCATGATTCAGGATGATTTTTCAAGCAAGTATAATGATTTCATATACAAATTTGAACACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCTGTTGTTGTTCTTTCCGATAAAGCCGGGTCAACAAGTACAGTGAGGAATCTTGTGTATAGTTGTCTTAATGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.29

Weight (kDa)

4.41

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AatII GACGTC 1 cut(s) 45
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 4 cut(s) 49, 97, 458, 470
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 265, 559
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 8 cut(s) 136, 197, 223, 284, 353, 432, 464, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 2 cut(s) 490, 521
AluI AGCT 2 cut(s) 490, 521
Alw26I GTCTC 3 cut(s) 33, 338, 367
AlwI GGATC 1 cut(s) 593
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 4 cut(s) 49, 97, 458, 470
AsuC2I CCSGG 1 cut(s) 547
AsuII TTCGAA 1 cut(s) 53
BbsI GAAGAC 3 cut(s) 62, 269, 618
BbvI GCAGC 1 cut(s) 530
BccI CCATC 1 cut(s) 281
BcnI CCSGG 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 33, 338, 367
BfmI CTRYAG 1 cut(s) 376
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 547
BmrFI CCNGG 1 cut(s) 547
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 3 cut(s) 62, 269, 618
Bpu14I TTCGAA 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 235, 427
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 530
BshFI GGCC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 366, 546
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 3 cut(s) 33, 338, 367
BsmBI CGTCTC 2 cut(s) 33, 367
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 338
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 598
BspANI GGCC 1 cut(s) 207
BspHI TCATGA 2 cut(s) 387, 622
BspPI GGATC 1 cut(s) 593
BspT104I TTCGAA 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 230
BssMI GATC 1 cut(s) 598
BssNI GRCGYC 1 cut(s) 42
Bst4CI ACNGT 4 cut(s) 127, 190, 247, 562
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 42
BstBI TTCGAA 1 cut(s) 53
BstF5I GGATG 2 cut(s) 235, 427
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 3 cut(s) 33, 338, 367
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 2 cut(s) 84, 213
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 545
BstSFI CTRYAG 1 cut(s) 376
BstV1I GCAGC 1 cut(s) 530
BstV2I GAAGAC 3 cut(s) 62, 269, 618
BsuRI GGCC 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 2 cut(s) 235, 427
BtsIMutI CAGTG 2 cut(s) 339, 567
CciI TCATGA 2 cut(s) 387, 622
Csp6I GTAC 2 cut(s) 264, 558
CviAII CATG 7 cut(s) 88, 203, 213, 327, 388, 412, 623
CviJI RGCY 4 cut(s) 207, 490, 521, 545
CviKI_1 RGCY 4 cut(s) 207, 490, 521, 545
CviQI GTAC 2 cut(s) 264, 558
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 49
Esp3I CGTCTC 2 cut(s) 33, 367
FaeI CATG 7 cut(s) 91, 206, 216, 330, 391, 415, 626
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 7 cut(s) 87, 202, 212, 326, 387, 411, 622
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 2 cut(s) 242, 434
Fsp4HI GCNGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 519
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 366, 546
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 7 cut(s) 91, 206, 216, 330, 391, 415, 626
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 5 cut(s) 116, 154, 197, 415, 568
HpaII CCGG 2 cut(s) 366, 546
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 3 cut(s) 121, 159, 538
Hpy188III TCNNGA 8 cut(s) 46, 136, 169, 284, 388, 419, 512, 623
Hpy8I GTNNAC 1 cut(s) 552
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 26, 263
HpyCH4III ACNGT 4 cut(s) 127, 190, 247, 562
HpyCH4IV ACGT 2 cut(s) 42, 262
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 213
HpySE526I ACGT 2 cut(s) 42, 262
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 7 cut(s) 91, 206, 216, 330, 391, 415, 626
Kzo9I GATC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 530
MaeII ACGT 2 cut(s) 42, 262
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 7 cut(s) 67, 158, 161, 184, 269, 272, 623
MluCI AATT 6 cut(s) 49, 97, 218, 458, 470, 626
MnlI CCTC 4 cut(s) 36, 172, 492, 558
MseI TTAA 2 cut(s) 306, 588
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 2 cut(s) 366, 546
MspR9I CCNGG 1 cut(s) 547
MwoI GCNNNNNNNGC 2 cut(s) 84, 213
NciI CCSGG 1 cut(s) 547
NdeII GATC 1 cut(s) 598
NlaIII CATG 7 cut(s) 91, 206, 216, 330, 391, 415, 626
NmeAIII GCCGAG 1 cut(s) 315
NspI RCATGY 1 cut(s) 330
NspV TTCGAA 1 cut(s) 53
PagI TCATGA 2 cut(s) 387, 622
PfeI GAWTC 5 cut(s) 116, 154, 197, 415, 568
PkrI GCNGC 1 cut(s) 520
PsiI TTATAA 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 2 cut(s) 265, 559
RsaNI GTAC 2 cut(s) 264, 558
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 2 cut(s) 306, 588
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 547
SetI ASST 7 cut(s) 45, 183, 265, 274, 484, 492, 523
SfcI CTRYAG 1 cut(s) 376
SfuI TTCGAA 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 621
Sse9I AATT 6 cut(s) 49, 97, 218, 458, 470, 626
SspI AATATT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 545
TaaI ACNGT 4 cut(s) 127, 190, 247, 562
TaiI ACGT 2 cut(s) 45, 265
TaqI TCGA 2 cut(s) 53, 484
TasI AATT 6 cut(s) 49, 97, 218, 458, 470, 626
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 5 cut(s) 116, 154, 197, 415, 568
Tru1I TTAA 2 cut(s) 306, 588
Tru9I TTAA 2 cut(s) 306, 588
TscAI CASTG 2 cut(s) 346, 567
TseI GCWGC 1 cut(s) 518
TspDTI ATGAA 6 cut(s) 201, 404, 439, 611, 624, 639
TspGWI ACGGA 2 cut(s) 51, 77
TspRI CASTG 2 cut(s) 346, 567
XapI RAATTY 4 cut(s) 49, 97, 458, 470
XceI RCATGY 1 cut(s) 330
ZraI GACGTC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.