Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Reverse (-)

68149277 .. 68160176

Gene Structure 10900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGACGAAAATTCGCAGAAGCTCGACAACACTGGCTACGAATCAATGACTCTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTTAGTGCAACAGAACGTACCCAGGACCGAAGGATCATTTACAGGGGTGCACGTGCTCTCTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTTGAACCAATCGTCTCCGGCAGTGTCCATAGTGATGTCATGAAAATTACAATACCAGATGGCATGACTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATATTCAAATTTGAAGACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCTGTTGTTGTTCTTTCCGATAAAGCCGGGTCAACAAGTATAGTGAGGAATCTTGTGACTAGTTGTCTTCTTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.61

Weight (kDa)

4.7

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	27 - 85	3.6e-06	Krr1 KH1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	221, 518
AcsI	RAATTY	3 cut(s)	10, 383, 395
AcvI	CACGTG	1 cut(s)	233
AfaI	GTAC	1 cut(s)	199
AgsI	TTSAA	7 cut(s)	61, 131, 157, 278, 357, 382, 389
AhdI	GACNNNNNGTC	1 cut(s)	507
AhlI	ACTAGT	1 cut(s)	503
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	3 cut(s)	22, 415, 446
AluI	AGCT	3 cut(s)	22, 415, 446
Alw21I	GWGCWC	2 cut(s)	232, 238
Alw26I	GTCTC	2 cut(s)	77, 292
Alw44I	GTGCAC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	221, 518
AoxI	GGCC	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	10, 383, 395
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	472
AvaII	GGWCC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	232
BbrPI	CACGTG	1 cut(s)	233
BbsI	GAAGAC	3 cut(s)	396, 503, 543
Bbv12I	GWGCWC	2 cut(s)	232, 238
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	77, 292
BcuI	ACTAGT	1 cut(s)	503
BfaI	CTAG	1 cut(s)	504
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	2 cut(s)	203, 472
Bme18I	GGWCC	1 cut(s)	205
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	203, 472
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	3 cut(s)	396, 503, 543
BpuMI	CCSGG	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	37, 164
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	169, 352
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	37, 164
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	2 cut(s)	232, 238
BsiSI	CCGG	2 cut(s)	291, 471
BsmAI	GTCTC	2 cut(s)	77, 292
BsmBI	CGTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	232, 238
Bsp143I	GATC	2 cut(s)	213, 523
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	3 cut(s)	312, 367, 547
BspPI	GGATC	2 cut(s)	221, 518
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	37, 164
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	213, 523
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	124, 181
Bst6I	CTCTTC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	169, 352
BstKTI	GATC	2 cut(s)	216, 526
BstMAI	GTCTC	2 cut(s)	77, 292
BstMBI	GATC	2 cut(s)	213, 523
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	201, 470
BstSLI	GKGCMC	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	3 cut(s)	396, 503, 543
BsuRI	GGCC	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	169, 352
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	30, 264, 301
CciI	TCATGA	3 cut(s)	312, 367, 547
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	7 cut(s)	137, 147, 252, 313, 337, 368, 548
CviJI	RGCY	6 cut(s)	22, 36, 141, 415, 446, 470
CviKI_1	RGCY	6 cut(s)	22, 36, 141, 415, 446, 470
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	215, 525
DpnII	GATC	2 cut(s)	213, 523
DriI	GACNNNNNGTC	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	78
Eam1105I	GACNNNNNGTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	205
Eco72I	CACGTG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	7 cut(s)	140, 150, 255, 316, 340, 371, 551
FatI	CATG	7 cut(s)	136, 146, 251, 312, 336, 367, 547
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	176, 359
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	291, 471
Hin1II	CATG	7 cut(s)	140, 150, 255, 316, 340, 371, 551
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	5 cut(s)	41, 49, 88, 131, 493
HpaII	CCGG	2 cut(s)	291, 471
Hpy166II	GTNNAC	2 cut(s)	230, 477
Hpy188I	TCNGA	2 cut(s)	93, 463
Hpy188III	TCNNGA	6 cut(s)	61, 103, 313, 368, 437, 548
Hpy8I	GTNNAC	2 cut(s)	230, 477
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	2 cut(s)	124, 181
HpyCH4IV	ACGT	2 cut(s)	196, 232
HpyCH4V	TGCA	3 cut(s)	78, 188, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	2 cut(s)	196, 232
Hsp92II	CATG	7 cut(s)	140, 150, 255, 316, 340, 371, 551
Kzo9I	GATC	2 cut(s)	213, 523
Lsp1109I	GCAGC	1 cut(s)	455
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	2 cut(s)	196, 232
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	215, 525
MboI	GATC	2 cut(s)	213, 523
MboII	GAAGA	5 cut(s)	95, 118, 401, 503, 548
MhlI	GDGCHC	2 cut(s)	232, 238
MluCI	AATT	6 cut(s)	10, 152, 318, 383, 395, 551
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	4 cut(s)	106, 337, 417, 483
MseI	TTAA	1 cut(s)	571
MslI	CAYNNNNRTG	2 cut(s)	306, 546
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	2 cut(s)	291, 471
MspR9I	CCNGG	2 cut(s)	203, 472
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	2 cut(s)	213, 523
NlaIII	CATG	7 cut(s)	140, 150, 255, 316, 340, 371, 551
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	1 cut(s)	255
PagI	TCATGA	3 cut(s)	312, 367, 547
PfeI	GAWTC	4 cut(s)	41, 88, 131, 493
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	43
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	201
PspCI	CACGTG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	2 cut(s)	306, 546
SaqAI	TTAA	1 cut(s)	571
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	213, 523
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	203, 472
SduI	GDGCHC	2 cut(s)	232, 238
SetI	ASST	7 cut(s)	24, 117, 199, 235, 409, 417, 448
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	306, 546
SpeI	ACTAGT	1 cut(s)	503
Sse9I	AATT	6 cut(s)	10, 152, 318, 383, 395, 551
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	201, 470
TaaI	ACNGT	2 cut(s)	124, 181
TaiI	ACGT	2 cut(s)	199, 235
TaqI	TCGA	2 cut(s)	24, 409
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	6 cut(s)	10, 152, 318, 383, 395, 551
TfiI	GAWTC	4 cut(s)	41, 88, 131, 493
Tru1I	TTAA	1 cut(s)	571
Tru9I	TTAA	1 cut(s)	571
TscAI	CASTG	3 cut(s)	37, 271, 301
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	6 cut(s)	135, 329, 364, 536, 549, 564
TspRI	CASTG	3 cut(s)	37, 271, 301
VneI	GTGCAC	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	3 cut(s)	10, 383, 395
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.