Rh1BG428400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004243
Physical Location & Seq
Reverse (-)
54579629 .. 54581229
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG428400.1

Sequence Viewer

Length: 318 bp
ATGGAAAAGAGCGAACGCGATAACAGTATGGACGAAAATTCGCAGGAGATCGACAACACATACTACGAATCTGAAACTGTGTTATTCAAGAAGCAGGATCTCTGCAGTACGTTCCTCGATCTCTTCCTAATTCCTGTGCCCCTGGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCGGTTGTCGTCCTTTCCGATAAAGCCGGGTCAACAAGTACAGTGAGGAATCTTGTGTATAGTTGTCTAATTGGCGATGACCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.02

Weight (kDa)

4.19

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 37
AfaI GTAC 2 cut(s) 109, 229
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
AlwI GGATC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 1 cut(s) 217
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 143, 217
BmrFI CCNGG 2 cut(s) 143, 217
BpiI GAAGAC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 141, 142
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 141, 142
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 4 cut(s) 48, 97, 118, 310
BspACI CCGC 1 cut(s) 191
BspFNI CGCG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 292
BspMAI CTGCAG 1 cut(s) 107
BspPI GGATC 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 141, 142
BssMI GATC 4 cut(s) 48, 97, 118, 310
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 26, 79, 232
Bst6I CTCTTC 1 cut(s) 128
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 4 cut(s) 51, 100, 121, 313
BstMBI GATC 4 cut(s) 48, 97, 118, 310
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 141, 215
BstSFI CTRYAG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 292
Csp6I GTAC 2 cut(s) 108, 228
CviAII CATG 1 cut(s) 293
CviJI RGCY 2 cut(s) 160, 215
CviKI_1 RGCY 2 cut(s) 160, 215
CviQI GTAC 2 cut(s) 108, 228
DpnI GATC 4 cut(s) 50, 99, 120, 312
DpnII GATC 4 cut(s) 48, 97, 118, 310
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 296
FaiI YATR 4 cut(s) 29, 61, 249, 294
FaqI GGGAC 1 cut(s) 159
FatI CATG 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HapII CCGG 1 cut(s) 216
Hin1II CATG 1 cut(s) 296
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 2 cut(s) 68, 238
HpaII CCGG 1 cut(s) 216
Hpy166II GTNNAC 1 cut(s) 222
Hpy188I TCNGA 2 cut(s) 73, 208
Hpy188III TCNNGA 3 cut(s) 88, 182, 293
Hpy8I GTNNAC 1 cut(s) 222
HpyCH4III ACNGT 3 cut(s) 26, 79, 232
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 1 cut(s) 296
Kzo9I GATC 4 cut(s) 48, 97, 118, 310
LpnPI CCDG 7 cut(s) 29, 80, 128, 147, 155, 178, 229
Lsp1109I GCAGC 1 cut(s) 200
MaeII ACGT 1 cut(s) 110
MalI GATC 4 cut(s) 50, 99, 120, 312
MboI GATC 4 cut(s) 48, 97, 118, 310
MboII GAAGA 2 cut(s) 115, 293
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 4 cut(s) 37, 129, 258, 296
MnlI CCTC 3 cut(s) 125, 162, 228
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 143, 217
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 18
NciI CCSGG 1 cut(s) 217
NdeII GATC 4 cut(s) 48, 97, 118, 310
NlaIII CATG 1 cut(s) 296
PagI TCATGA 1 cut(s) 292
PasI CCCWGGG 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 2 cut(s) 68, 238
PkrI GCNGC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PstI CTGCAG 1 cut(s) 107
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 109, 229
RsaNI GTAC 2 cut(s) 108, 228
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 4 cut(s) 48, 97, 118, 310
ScrFI CCNGG 2 cut(s) 143, 217
SduI GDGCHC 1 cut(s) 141
SetI ASST 3 cut(s) 113, 154, 162
SfcI CTRYAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 4 cut(s) 37, 129, 258, 296
SsiI CCGC 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 141, 215
TaaI ACNGT 3 cut(s) 26, 79, 232
TaiI ACGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 51, 117, 154
TasI AATT 4 cut(s) 37, 129, 258, 296
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 2 cut(s) 68, 238
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 281, 294, 309
TspRI CASTG 1 cut(s) 237
XapI RAATTY 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.