Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Reverse (-)

19079509 .. 19088303

Gene Structure 8795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00397390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCGCCAATCCGATCCATGTGCCTCCTCTGTACGCTCCCCGACCACATGCTCGAAATCTACACGCTGTTGTAGGGAGAAGAAAAAAGTGAAATTCCATCAAATTTTCCATGCACCACCACTCAAGGTGGTGCCATGTATTTTCAGGCCATATTCATGGAGGAGCAAGGAGGATGATGCTACTTTAGAAGAAATGAGAATCGAACGAATTCGGAAAAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTTACTGCAATAGAATGTACCGTTTACGGGGTGCACGTGCTCTCGTGTTCGGCATGTGGTCTTGGCACCGAATGGGTACCGACATCGGATCCTTTGTCATTGTTTTCTTATCGATATGATCCTATATGTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

16.13

Weight (kDa)

8.0

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	3 cut(s)	130, 353, 364
AclWI	GGATC	4 cut(s)	8, 371, 384, 401
AcsI	RAATTY	3 cut(s)	92, 102, 207
AcvI	CACGTG	1 cut(s)	325
AfaI	GTAC	3 cut(s)	33, 307, 366
AfiI	CCNNNNNNNGG	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	239, 265, 420
Alw21I	GWGCWC	2 cut(s)	324, 330
Alw44I	GTGCAC	1 cut(s)	320
AlwI	GGATC	4 cut(s)	8, 371, 384, 401
AoxI	GGCC	2 cut(s)	146, 247
ApaLI	GTGCAC	1 cut(s)	320
ApoI	RAATTY	3 cut(s)	92, 102, 207
Asp700I	GAANNNNTTC	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	3 cut(s)	130, 353, 364
BauI	CACGAG	1 cut(s)	331
BbrPI	CACGTG	1 cut(s)	325
Bbv12I	GWGCWC	2 cut(s)	324, 330
BccI	CCATC	1 cut(s)	105
BcgI	CGANNNNNNTGC	1 cut(s)	36
BmiI	GGNNCC	4 cut(s)	132, 355, 366, 378
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	400
BseGI	GGATG	2 cut(s)	178, 277
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	16, 175
BseSI	GKGCMC	1 cut(s)	324
BshFI	GGCC	2 cut(s)	148, 249
BshNI	GGYRCC	3 cut(s)	130, 353, 364
BshVI	ATCGAT	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	324, 330
BslI	CCNNNNNNNGG	1 cut(s)	315
BsnI	GGCC	2 cut(s)	148, 249
Bsp1286I	GDGCHC	2 cut(s)	324, 330
Bsp143I	GATC	3 cut(s)	13, 376, 406
BspANI	GGCC	2 cut(s)	148, 249
BspDI	ATCGAT	1 cut(s)	400
BspLI	GGNNCC	4 cut(s)	132, 355, 366, 378
BspPI	GGATC	4 cut(s)	8, 371, 384, 401
BspT107I	GGYRCC	3 cut(s)	130, 353, 364
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	3 cut(s)	13, 376, 406
BssSI	CACGAG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	232, 289, 310
BstBAI	YACGTR	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	178, 277
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	16, 379, 409
BstMBI	GATC	3 cut(s)	13, 376, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	51, 345
BstSLI	GKGCMC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	376
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	376
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	148, 249
BsuTUI	ATCGAT	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	178, 277
CfoI	GCGC	1 cut(s)	6
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	32, 306, 365
CviAII	CATG	9 cut(s)	18, 48, 110, 135, 156, 245, 255, 342, 423
CviJI	RGCY	2 cut(s)	148, 249
CviKI_1	RGCY	2 cut(s)	148, 249
CviQI	GTAC	3 cut(s)	32, 306, 365
DpnI	GATC	3 cut(s)	15, 378, 408
DpnII	GATC	3 cut(s)	13, 376, 406
Eco72I	CACGTG	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	207
FaeI	CATG	9 cut(s)	21, 51, 113, 138, 159, 248, 258, 345, 426
FatI	CATG	9 cut(s)	17, 47, 109, 134, 155, 244, 254, 341, 422
FokI	GGATG	2 cut(s)	185, 284
GlaI	GCGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	148, 249
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	9 cut(s)	21, 51, 113, 138, 159, 248, 258, 345, 426
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	198, 239
Hpy166II	GTNNAC	2 cut(s)	313, 322
Hpy188I	TCNGA	3 cut(s)	13, 213, 376
Hpy8I	GTNNAC	2 cut(s)	313, 322
HpyCH4III	ACNGT	3 cut(s)	232, 289, 310
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	113, 296, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	9 cut(s)	21, 51, 113, 138, 159, 248, 258, 345, 426
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	368
Kzo9I	GATC	3 cut(s)	13, 376, 406
LmnI	GCTCC	2 cut(s)	41, 162
LpnPI	CCDG	2 cut(s)	130, 253
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	15, 378, 408
MboI	GATC	3 cut(s)	13, 376, 406
MboII	GAAGA	2 cut(s)	91, 200
MflI	RGATCY	1 cut(s)	376
MhlI	GDGCHC	2 cut(s)	324, 330
MluCI	AATT	4 cut(s)	92, 102, 207, 260
MnlI	CCTC	5 cut(s)	34, 37, 153, 163, 214
MroXI	GAANNNNTTC	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	3 cut(s)	13, 376, 406
NlaIII	CATG	9 cut(s)	21, 51, 113, 138, 159, 248, 258, 345, 426
NlaIV	GGNNCC	4 cut(s)	132, 355, 366, 378
NspI	RCATGY	2 cut(s)	51, 345
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	198, 239
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	325
PspCI	CACGTG	1 cut(s)	325
PspN4I	GGNNCC	4 cut(s)	132, 355, 366, 378
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	3 cut(s)	33, 307, 366
RsaNI	GTAC	3 cut(s)	32, 306, 365
RseI	CAYNNNNRTG	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	13, 376, 406
SduI	GDGCHC	2 cut(s)	324, 330
SetI	ASST	3 cut(s)	129, 225, 327
SfaNI	GCATC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	4 cut(s)	92, 102, 207, 260
TaaI	ACNGT	3 cut(s)	232, 289, 310
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	53, 201, 400
TasI	AATT	4 cut(s)	92, 102, 207, 260
TfiI	GAWTC	2 cut(s)	198, 239
TspDTI	ATGAA	2 cut(s)	144, 243
VneI	GTGCAC	1 cut(s)	320
XapI	RAATTY	3 cut(s)	92, 102, 207
XceI	RCATGY	2 cut(s)	51, 345
XmnI	GAANNNNTTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.