Rh1CG441000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004243
Physical Location & Seq
Reverse (-)
69429971 .. 69433979
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG441000.1

Sequence Viewer

Length: 597 bp
ATGGAAAAGAGCGAGAGCGATAACAGTATGGACGAAAATTCGCAGAAGATCGACAACACTGGCTACGAATCAATGACTCTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTTAGTGCAACAGAACGTACCCTGGACCGAAGGATCATTTACAGGGGTGCACGTGCTCTCTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTTGAACCAATCGTCTCCGGCAGTGTCCATAGTGATGTCATGAAAATTACAATACCAGATGGCATGACTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATATTCAAATTTGAAGACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCTGTTGTTGTTCTTTCCGATAAATTCGGGTCAACAAGTATAGTGAGGAATCTTGTGACTAGTTGTCTTCTTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.55

Weight (kDa)

4.67

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 36 - 93 1e-05 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 245, 542
AcsI RAATTY 4 cut(s) 37, 407, 419, 491
AcvI CACGTG 1 cut(s) 257
AfaI GTAC 1 cut(s) 223
AgsI TTSAA 7 cut(s) 88, 155, 181, 302, 381, 406, 413
AhdI GACNNNNNGTC 1 cut(s) 531
AhlI ACTAGT 1 cut(s) 527
AjnI CCWGG 1 cut(s) 225
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 2 cut(s) 439, 470
AluI AGCT 2 cut(s) 439, 470
Alw21I GWGCWC 2 cut(s) 256, 262
Alw26I GTCTC 2 cut(s) 104, 316
Alw44I GTGCAC 1 cut(s) 252
AlwI GGATC 2 cut(s) 245, 542
AoxI GGCC 1 cut(s) 163
ApaLI GTGCAC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 4 cut(s) 37, 407, 419, 491
AspS9I GGNCC 1 cut(s) 229
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 256
BbrPI CACGTG 1 cut(s) 257
BbsI GAAGAC 3 cut(s) 420, 527, 567
Bbv12I GWGCWC 2 cut(s) 256, 262
BbvI GCAGC 1 cut(s) 479
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 227
BcoDI GTCTC 2 cut(s) 104, 316
BcuI ACTAGT 1 cut(s) 527
BfaI CTAG 1 cut(s) 528
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 229
BmeRI GACNNNNNGTC 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 3 cut(s) 420, 527, 567
BsaAI YACGTR 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 2 cut(s) 64, 188
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 2 cut(s) 193, 376
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 2 cut(s) 64, 188
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 2 cut(s) 256, 262
BsiSI CCGG 1 cut(s) 315
BsmAI GTCTC 2 cut(s) 104, 316
BsmBI CGTCTC 1 cut(s) 316
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 256, 262
Bsp143I GATC 3 cut(s) 48, 237, 547
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 3 cut(s) 336, 391, 571
BspPI GGATC 2 cut(s) 245, 542
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 2 cut(s) 64, 188
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 3 cut(s) 48, 237, 547
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 26, 148, 205
BstBAI YACGTR 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 193, 376
BstKTI GATC 3 cut(s) 51, 240, 550
BstMAI GTCTC 2 cut(s) 104, 316
BstMBI GATC 3 cut(s) 48, 237, 547
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 3 cut(s) 420, 527, 567
BsuRI GGCC 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 558
BtsCI GGATG 2 cut(s) 193, 376
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 3 cut(s) 57, 288, 325
CciI TCATGA 3 cut(s) 336, 391, 571
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 222
CviAII CATG 7 cut(s) 161, 171, 276, 337, 361, 392, 572
CviJI RGCY 4 cut(s) 63, 165, 439, 470
CviKI_1 RGCY 4 cut(s) 63, 165, 439, 470
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 50, 239, 549
DpnII GATC 3 cut(s) 48, 237, 547
DriI GACNNNNNGTC 1 cut(s) 531
Eam1105I GACNNNNNGTC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 229
Eco72I CACGTG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 7 cut(s) 164, 174, 279, 340, 364, 395, 575
FatI CATG 7 cut(s) 160, 170, 275, 336, 360, 391, 571
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 2 cut(s) 200, 383
Fsp4HI GCNGC 1 cut(s) 468
FspBI CTAG 1 cut(s) 528
GluI GCNGC 1 cut(s) 468
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 315
Hin1II CATG 7 cut(s) 164, 174, 279, 340, 364, 395, 575
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HinfI GANTC 5 cut(s) 68, 76, 112, 155, 517
HpaII CCGG 1 cut(s) 315
Hpy166II GTNNAC 2 cut(s) 254, 501
Hpy188I TCNGA 2 cut(s) 117, 487
Hpy188III TCNNGA 6 cut(s) 88, 127, 337, 392, 461, 572
Hpy8I GTNNAC 2 cut(s) 254, 501
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 3 cut(s) 26, 148, 205
HpyCH4IV ACGT 2 cut(s) 220, 256
HpyCH4V TGCA 3 cut(s) 105, 212, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 2 cut(s) 220, 256
Hsp92II CATG 7 cut(s) 164, 174, 279, 340, 364, 395, 575
Kzo9I GATC 3 cut(s) 48, 237, 547
Lsp1109I GCAGC 1 cut(s) 479
MaeI CTAG 1 cut(s) 528
MaeII ACGT 2 cut(s) 220, 256
MaeIII GTNAC 1 cut(s) 523
MalI GATC 3 cut(s) 50, 239, 549
MboI GATC 3 cut(s) 48, 237, 547
MboII GAAGA 5 cut(s) 58, 142, 425, 527, 572
MhlI GDGCHC 2 cut(s) 256, 262
MluCI AATT 7 cut(s) 37, 176, 342, 407, 419, 491, 575
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 4 cut(s) 130, 361, 441, 507
MseI TTAA 1 cut(s) 595
MslI CAYNNNNRTG 2 cut(s) 330, 570
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 3 cut(s) 48, 237, 547
NlaIII CATG 7 cut(s) 164, 174, 279, 340, 364, 395, 575
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 279
PagI TCATGA 3 cut(s) 336, 391, 571
PfeI GAWTC 4 cut(s) 68, 112, 155, 517
PkrI GCNGC 1 cut(s) 469
PleI GAGTC 1 cut(s) 70
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 225
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 225
PspPI GGNCC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 330, 570
SaqAI TTAA 1 cut(s) 595
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 3 cut(s) 48, 237, 547
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 256, 262
SetI ASST 6 cut(s) 141, 223, 259, 433, 441, 472
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 2 cut(s) 330, 570
SpeI ACTAGT 1 cut(s) 527
Sse9I AATT 7 cut(s) 37, 176, 342, 407, 419, 491, 575
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 225
TaaI ACNGT 3 cut(s) 26, 148, 205
TaiI ACGT 2 cut(s) 223, 259
TaqI TCGA 2 cut(s) 51, 433
TaqII GACCGA 1 cut(s) 246
TasI AATT 7 cut(s) 37, 176, 342, 407, 419, 491, 575
TfiI GAWTC 4 cut(s) 68, 112, 155, 517
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TscAI CASTG 3 cut(s) 64, 295, 325
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 467
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 6 cut(s) 159, 353, 388, 560, 573, 588
TspRI CASTG 3 cut(s) 64, 295, 325
VneI GTGCAC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 4 cut(s) 37, 407, 419, 491
XceI RCATGY 1 cut(s) 279
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.