Rh1CG441100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004243
Physical Location & Seq
Reverse (-)
69442160 .. 69443811
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG441100.1

Sequence Viewer

Length: 519 bp
ATGGAAAAGAGCGAACGCGATAACAGTACGGACGAAAATTCGCAGGAGATCGACAACACATACTACGAATCTGAAACTGTGTTATTCAAGAAGCAGGATCTCTGCAAAGAAGGGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCGTGGAAACAGGGTTTTAATGCTCTCTCTGTTCTGGCATGTGGTCTCGGCACTGAATGGGTTGAACCAATCGTCTCGGGCTGTGTCTATAGTGATGTCATGTATATCAGAATACCAGATGGCATGAGTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATAGACAAATTTGAACACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCCAGAAGCAGCGGTTGTCGTCCTTTCCGATAAAGCTGGGTCAACAAGTACAGTGAGGAATCTTGTGTATAGTTGTCTAATTGGCGATGACCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.74

Weight (kDa)

4.41

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 392
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 3 cut(s) 37, 329, 341
AfaI GTAC 2 cut(s) 28, 430
AgsI TTSAA 5 cut(s) 88, 158, 224, 303, 335
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 2 cut(s) 361, 416
AluI AGCT 2 cut(s) 361, 416
Alw26I GTCTC 2 cut(s) 209, 238
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 3 cut(s) 37, 329, 341
AvaI CYCGRG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 209, 238
BfmI CTRYAG 1 cut(s) 247
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 209
BseGI GGATG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 401
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 235
BsmAI GTCTC 2 cut(s) 209, 238
BsmBI CGTCTC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 235
Bsp143I GATC 3 cut(s) 48, 97, 511
BspACI CCGC 1 cut(s) 392
BspFNI CGCG 1 cut(s) 18
BspHI TCATGA 2 cut(s) 313, 493
BspPI GGATC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 209
BssMI GATC 3 cut(s) 48, 97, 511
Bst4CI ACNGT 4 cut(s) 26, 79, 151, 433
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 3 cut(s) 51, 100, 514
BstMAI GTCTC 2 cut(s) 209, 238
BstMBI GATC 3 cut(s) 48, 97, 511
BstNSI RCATGY 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 247
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 210, 438
CciI TCATGA 2 cut(s) 313, 493
Csp6I GTAC 2 cut(s) 27, 429
CviAII CATG 5 cut(s) 198, 259, 283, 314, 494
CviJI RGCY 3 cut(s) 240, 361, 416
CviKI_1 RGCY 3 cut(s) 240, 361, 416
CviQI GTAC 2 cut(s) 27, 429
DpnI GATC 3 cut(s) 50, 99, 513
DpnII GATC 3 cut(s) 48, 97, 511
Eco31I GGTCTC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 5 cut(s) 201, 262, 286, 317, 497
FatI CATG 5 cut(s) 197, 258, 282, 313, 493
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 390
GsaI CCCAGC 1 cut(s) 420
Hin1II CATG 5 cut(s) 201, 262, 286, 317, 497
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HinfI GANTC 4 cut(s) 68, 115, 158, 439
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 4 cut(s) 73, 120, 269, 409
Hpy188III TCNNGA 5 cut(s) 88, 130, 314, 383, 494
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 4 cut(s) 26, 79, 151, 433
HpyCH4V TGCA 1 cut(s) 105
Hsp92II CATG 5 cut(s) 201, 262, 286, 317, 497
Kzo9I GATC 3 cut(s) 48, 97, 511
LpnPI CCDG 9 cut(s) 29, 80, 115, 155, 179, 288, 379, 396, 402
Lsp1109I GCAGC 1 cut(s) 401
MalI GATC 3 cut(s) 50, 99, 513
MboI GATC 3 cut(s) 48, 97, 511
MboII GAAGA 2 cut(s) 145, 494
MflI RGATCY 1 cut(s) 97
MluCI AATT 5 cut(s) 37, 329, 341, 459, 497
MnlI CCTC 4 cut(s) 133, 283, 363, 429
MseI TTAA 2 cut(s) 177, 517
MslI CAYNNNNRTG 1 cut(s) 492
MspA1I CMGCKG 1 cut(s) 392
MvnI CGCG 1 cut(s) 18
NdeII GATC 3 cut(s) 48, 97, 511
NlaIII CATG 5 cut(s) 201, 262, 286, 317, 497
NmeAIII GCCGAG 1 cut(s) 186
NspI RCATGY 1 cut(s) 201
PagI TCATGA 2 cut(s) 313, 493
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PfeI GAWTC 4 cut(s) 68, 115, 158, 439
PkrI GCNGC 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 28, 430
RsaNI GTAC 2 cut(s) 27, 429
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 2 cut(s) 177, 517
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 3 cut(s) 48, 97, 511
SetI ASST 4 cut(s) 144, 355, 363, 418
SfcI CTRYAG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 492
Sse9I AATT 5 cut(s) 37, 329, 341, 459, 497
SsiI CCGC 1 cut(s) 392
TaaI ACNGT 4 cut(s) 26, 79, 151, 433
TaqI TCGA 2 cut(s) 51, 355
TasI AATT 5 cut(s) 37, 329, 341, 459, 497
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 4 cut(s) 68, 115, 158, 439
Tru1I TTAA 2 cut(s) 177, 517
Tru9I TTAA 2 cut(s) 177, 517
TscAI CASTG 2 cut(s) 217, 438
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 310, 482, 495, 510
TspGWI ACGGA 1 cut(s) 44
TspRI CASTG 2 cut(s) 217, 438
XapI RAATTY 3 cut(s) 37, 329, 341
XceI RCATGY 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.