Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Forward (+)

5166705 .. 5168360

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATGGAAAAGAGCGCGGCGGAGATGGAGAGCGACAACAGTGAGATGGATAGCGATACCAGTGAGATGATGGAAAAGAGCTCGGCGGATAGCGATACCAGTATGGACGATACTACATACGGATACGGATCCATCACCGTCGTATTCGAGGAGGAGGGTCTCTGCAAAGAAGAGGATATGAAGCATGTCTGGAAGAAAGAGGTGGAAGCAGTGTTTGAAGCTAAGGGCCTTTCATGCGAATTGAAGTGGGATGAGAAACAGATGACTGTCAGTGCATCAAAACGTACACATCTTATGGACACCACCATCGTTTTCAGGGCTGGGCGTGCTCTCTATGTTCTGGCTTGTGGTCTCAGCACTCAATGGGTTGAACCGATCGTCTCTGGGGAAATCTATACTGCTGTCATTGAAGTTAGACCGCCAGAGGGCACGACTGAGGATGCTTTTTCAATCAAGTATCGTGAATTCAGAGACAAAGTTGAACGCAAATTTGAACTATCTCAGAAGCTGTCCTGCTTTATTCTTTATCATTCTGCAGCTGTCGTTGTTCTTTCCGATAAAGAGAGGTCACCCAGTATAATAAGTAATCTTGTGGATTGCTGTCTAATGGGTGATGATCCTTTTGACGAAGATCATTTTCATGAATTGTTCCTTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.0

Weight (kDa)

4.49

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	17, 20, 86, 419
AclWI	GGATC	3 cut(s)	123, 136, 611
AcsI	RAATTY	2 cut(s)	464, 488
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	7 cut(s)	218, 244, 371, 410, 450, 482, 494
AluBI	AGCT	4 cut(s)	81, 221, 508, 539
AluI	AGCT	4 cut(s)	81, 221, 508, 539
Alw21I	GWGCWC	2 cut(s)	83, 331
Alw26I	GTCTC	4 cut(s)	164, 356, 385, 465
AlwI	GGATC	3 cut(s)	123, 136, 611
AlwNI	CAGNNNCTG	1 cut(s)	508
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	464, 488
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	127, 561, 623
BaeGI	GKGCMC	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	83, 331
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	5 cut(s)	19, 40, 64, 140, 314
BciVI	GTATCC	1 cut(s)	116
BcoDI	GTCTC	4 cut(s)	164, 356, 385, 465
BfmI	CTRYAG	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	2 cut(s)	18, 537
BlsI	GCNGC	2 cut(s)	19, 538
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	284, 430
BmuI	ACTGGG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	222
BsaBI	GATNNNNATC	1 cut(s)	127
BsaI	GGTCTC	2 cut(s)	164, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	60, 99, 573
Bse8I	GATNNNNATC	1 cut(s)	127
BseGI	GGATG	2 cut(s)	256, 445
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	367, 426, 515
BseNI	ACTGG	3 cut(s)	60, 99, 573
BseRI	GAGGAG	2 cut(s)	164, 167
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	548
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	2 cut(s)	83, 331
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	4 cut(s)	164, 356, 385, 465
BsmBI	CGTCTC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	2 cut(s)	164, 356
Bsp1286I	GDGCHC	3 cut(s)	83, 331, 431
Bsp143I	GATC	4 cut(s)	128, 375, 616, 631
BspACI	CCGC	4 cut(s)	17, 20, 86, 419
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	3 cut(s)	366, 427, 514
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	3 cut(s)	123, 136, 611
BspTNI	GGTCTC	2 cut(s)	164, 356
BsrI	ACTGG	3 cut(s)	60, 99, 573
BssMI	GATC	4 cut(s)	128, 375, 616, 631
Bst4CI	ACNGT	3 cut(s)	41, 139, 268
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	4 cut(s)	222, 353, 435, 501
BstEII	GGTNACC	1 cut(s)	567
BstF5I	GGATG	2 cut(s)	256, 445
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	4 cut(s)	131, 378, 619, 634
BstMAI	GTCTC	4 cut(s)	164, 356, 385, 465
BstMBI	GATC	4 cut(s)	128, 375, 616, 631
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 326
BstNSI	RCATGY	1 cut(s)	188
BstPI	GGTNACC	1 cut(s)	567
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	256, 445
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	4 cut(s)	46, 67, 216, 277
Cac8I	GCNNGC	1 cut(s)	327
CaiI	CAGNNNCTG	1 cut(s)	508
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	3 cut(s)	185, 234, 641
CviJI	RGCY	7 cut(s)	81, 221, 228, 320, 344, 508, 539
CviKI_1	RGCY	7 cut(s)	81, 221, 228, 320, 344, 508, 539
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	4 cut(s)	222, 353, 435, 501
DpnI	GATC	4 cut(s)	130, 377, 618, 633
DpnII	GATC	4 cut(s)	128, 375, 616, 631
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	2 cut(s)	35, 101
Ecl136II	GAGCTC	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	2 cut(s)	164, 356
Eco53kI	GAGCTC	1 cut(s)	81
Eco91I	GGTNACC	1 cut(s)	567
EcoICRI	GAGCTC	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	567
EcoRI	GAATTC	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	385
FaeI	CATG	3 cut(s)	188, 237, 644
FatI	CATG	3 cut(s)	184, 233, 640
Fnu4HI	GCNGC	2 cut(s)	18, 537
FokI	GGATG	2 cut(s)	263, 452
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	18, 537
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	2 cut(s)	18, 537
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	228
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	188, 237, 644
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HphI	GGTGA	3 cut(s)	127, 561, 623
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	3 cut(s)	470, 504, 556
Hpy188III	TCNNGA	3 cut(s)	190, 461, 641
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	3 cut(s)	41, 139, 268
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	165, 275, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 326
HpyF3I	CTNAG	4 cut(s)	222, 353, 435, 501
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	188, 237, 644
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	128, 375, 616, 631
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	2 cut(s)	284, 430
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	4 cut(s)	130, 377, 618, 633
MboI	GATC	4 cut(s)	128, 375, 616, 631
MboII	GAAGA	3 cut(s)	182, 205, 641
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	3 cut(s)	83, 331, 431
MluCI	AATT	4 cut(s)	239, 464, 488, 644
MnlI	CCTC	8 cut(s)	142, 145, 148, 166, 193, 418, 430, 558
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	539
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	234, 326
NdeII	GATC	4 cut(s)	128, 375, 616, 631
NlaIII	CATG	3 cut(s)	188, 237, 644
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	567
NspI	RCATGY	1 cut(s)	188
PagI	TCATGA	1 cut(s)	640
PkrI	GCNGC	2 cut(s)	19, 538
Ple19I	CGATCG	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	83
PspEI	GGTNACC	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	378
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	639
SacI	GAGCTC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	18, 537
Sau3AI	GATC	4 cut(s)	128, 375, 616, 631
Sau96I	GGNCC	1 cut(s)	226
SduI	GDGCHC	3 cut(s)	83, 331, 431
SetI	ASST	7 cut(s)	83, 204, 223, 286, 510, 541, 569
SfaNI	GCATC	2 cut(s)	284, 430
SfcI	CTRYAG	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	639
Sse9I	AATT	4 cut(s)	239, 464, 488, 644
SsiI	CCGC	4 cut(s)	17, 20, 86, 419
SstI	GAGCTC	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	41, 139, 268
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	239, 464, 488, 644
TauI	GCSGC	1 cut(s)	20
TscAI	CASTG	4 cut(s)	46, 67, 216, 277
TseFI	GTSAC	1 cut(s)	567
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	567
TspDTI	ATGAA	4 cut(s)	194, 222, 629, 657
TspGWI	ACGGA	2 cut(s)	135, 141
TspRI	CASTG	4 cut(s)	46, 67, 216, 277
XapI	RAATTY	2 cut(s)	464, 488
XceI	RCATGY	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.