Rorug01G0445300

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
54162080 .. 54164743
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0445300.1

Sequence Viewer

Length: 1281 bp
ATGTCGATCCTATGCGGCTGCCCTCTCCTTGAGTGTGTTTACTGTCTGGCATGTACTCGTTGGGCTTATAAGCGATGCCTCCACACGGCAGGCCATGACAGTGAGACATGGGGCCTTTCCAGTGCCGAAGAATTTGATCCTGTTCCTCGCATCTGCCGGTACATTCTAGCTGTTTATGAAGATGATCTTAGGCACCCACTTTGGGAACCTCCTGGTGGGTATGGAATAAACCCAGATTGGTTAATTTCGAAACGAACATATGTAGATACCCAAGGGCAAGCTCCACCTTATATGTTGTACCTTGATCATAATCATGCCGATATAGTTCTTGCCTTTAGAGGCCTTAATTTGGCAAGAGAGAGTGACTATGCAGTTTTATTGGACAATAAGCTGGGGAAGAGGAAATTTGATGGTGGATACGTTCACAACGGGCTATTGAATGCAGCTGGATGGGTTCTTGATGCAGAATGTGAAACTCTGAAAGATTTGGTGGGGAAATATCCAAAATATACTGTAACATTCGCGGGACACTCCCTAGGTTCAGGTGTAGCAGCATTGTTAACAATGCTGGTGGTGCAGAATAGGGATAGATTGGGAGACATTGAGCGAAAGAGGGTTAGGGGATATGCGATTGCACCAGCGAGGTGTATGTCATTGAACTTAGCTGTCAGATATGCAGACGTTATCAATTCTGTTGTGCTTCAGGATGACTTCTTACCACGGACGGCGACACCCTTGGAAGACATTTTCAAGTCACTTTTCTGTTTGCCGTGCCTACTATGCCTACGATGTATGCGGGACACATGTATACCTGAGGAGAAGATGCTCAAAGATCCAAGGAGGCTGTATGCACCTGGCCGCCTCTATCATATTGTTGAGAGAAAACCTTGCAGGTTAGGAAGGTTTCCCCCAGTTGTCAAGACAGCAGTGCCCGTAGATGGGAGGTTTGAGCACATAGTTCTCTCTTGTAATGCCACTTCAGATCATGCCATCGTTTGGATAGAGAGAGAAGCTCAAAGGGCACTAGATTTAATGTTGGAGAAAGCTCAAAGTATGGAGATTCCACCAAAGCAAAGAATGGAGCGGCAGGAGACAGTAGCGAAAGAACACACCGAGGAGTATAAGGCTGCATTACAGAGGGCTGTCACATTGGCCGTGCCTCACGCGTACTCACCATCACCATACGGAACTTTTGATGAGCGGGAAGAGGAGGAGCACTCAAGCGGGGAATCGTCTTTCGGTTCAACTAAGAAAAGCAAGACATTTGTAGAGCGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

426

Amino Acids

48.28

Weight (kDa)

6.68

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 9 - 75 3.8e-22 Lipase 3 N-terminal region
Lipase_3 PF01764 109 - 244 4.2e-26 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 882
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 996
AccBSI CCGCTC 3 cut(s) 1084, 1201, 1273
AccI GTMKAC 1 cut(s) 808
AccII CGCG 2 cut(s) 524, 1166
AciI CCGC 8 cut(s) 15, 524, 796, 859, 1084, 1201, 1224, 1273
AclWI GGATC 2 cut(s) 131, 827
AcoI YGGCCR 2 cut(s) 856, 1152
AcsI RAATTY 2 cut(s) 131, 404
AcuI CTGAAG 2 cut(s) 686, 963
AfaI GTAC 4 cut(s) 55, 161, 299, 1169
AfiI CCNNNNNNNGG 7 cut(s) 85, 202, 215, 349, 938, 939, 996
AflIII ACRYGT 2 cut(s) 803, 1164
AgsI TTSAA 4 cut(s) 439, 658, 751, 1245
AjnI CCWGG 2 cut(s) 211, 853
AluBI AGCT 7 cut(s) 170, 281, 391, 446, 665, 1013, 1046
AluI AGCT 7 cut(s) 170, 281, 391, 446, 665, 1013, 1046
Alw21I GWGCWC 2 cut(s) 954, 1218
Alw26I GTCTC 3 cut(s) 98, 591, 1085
AlwI GGATC 2 cut(s) 131, 827
AoxI GGCC 5 cut(s) 91, 112, 340, 856, 1152
ApeKI GCWGC 4 cut(s) 18, 443, 551, 1127
ApoI RAATTY 2 cut(s) 131, 404
AspA2I CCTAGG 1 cut(s) 535
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 1164, 1170
AsuII TTCGAA 1 cut(s) 248
AvrII CCTAGG 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 813
BaeGI GKGCMC 2 cut(s) 933, 1024
BanI GGYRCC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 961, 993
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 2 cut(s) 954, 1218
BbvI GCAGC 4 cut(s) 5, 455, 563, 1114
BccI CCATC 5 cut(s) 404, 444, 932, 998, 1183
BceAI ACGGC 4 cut(s) 102, 741, 754, 1139
BciT130I CCWGG 2 cut(s) 213, 855
BciVI GTATCC 1 cut(s) 410
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 98, 591, 1085
BfaI CTAG 3 cut(s) 167, 536, 1025
BfuAI ACCTGC 1 cut(s) 882
BfuI GTATCC 1 cut(s) 410
BisI GCNGC 7 cut(s) 16, 19, 444, 552, 859, 1085, 1128
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 7 cut(s) 17, 20, 445, 553, 860, 1086, 1129
Bme1390I CCNGG 2 cut(s) 213, 855
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 3 cut(s) 113, 194, 207
BmrFI CCNGG 2 cut(s) 213, 855
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 4 cut(s) 65, 159, 451, 813
BmuI ACTGGG 1 cut(s) 905
BpiI GAAGAC 1 cut(s) 747
BplI GAGNNNNNCTC 4 cut(s) 997, 1029, 1202, 1234
Bpu14I TTCGAA 1 cut(s) 248
BpuEI CTTGAG 2 cut(s) 50, 1204
BsaBI GATNNNNATC 1 cut(s) 309
BsaJI CCNNGG 6 cut(s) 271, 535, 719, 735, 836, 1113
Bsc4I CCNNNNNNNGG 7 cut(s) 85, 202, 215, 349, 938, 939, 996
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 2 cut(s) 120, 911
Bse21I CCTNAGG 1 cut(s) 813
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 213, 855
BseDI CCNNGG 6 cut(s) 271, 535, 719, 735, 836, 1113
BseGI GGATG 2 cut(s) 455, 712
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 7 cut(s) 85, 202, 215, 349, 938, 939, 996
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 2 cut(s) 120, 911
BseRI GAGGAG 4 cut(s) 830, 1130, 1223, 1226
BseSI GKGCMC 2 cut(s) 933, 1024
BseXI GCAGC 4 cut(s) 5, 455, 563, 1114
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 2 cut(s) 524, 1166
BshFI GGCC 5 cut(s) 93, 114, 342, 858, 1154
BshNI GGYRCC 1 cut(s) 192
BsiHKAI GWGCWC 2 cut(s) 954, 1218
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 2 cut(s) 540, 812
BslI CCNNNNNNNGG 7 cut(s) 85, 202, 215, 349, 938, 939, 996
BsmAI GTCTC 3 cut(s) 98, 591, 1085
BsmFI GGGAC 2 cut(s) 540, 812
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 5 cut(s) 93, 114, 342, 858, 1154
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 4 cut(s) 933, 954, 1024, 1218
Bsp143I GATC 6 cut(s) 6, 136, 184, 304, 832, 982
BspACI CCGC 8 cut(s) 15, 524, 796, 859, 1084, 1201, 1224, 1273
BspANI GGCC 5 cut(s) 93, 114, 342, 858, 1154
BspCNI CTCAG 1 cut(s) 805
BspFNI CGCG 2 cut(s) 524, 1166
BspLI GGNNCC 3 cut(s) 113, 194, 207
BspMI ACCTGC 1 cut(s) 882
BspPI GGATC 2 cut(s) 131, 827
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 192
BsrBI CCGCTC 3 cut(s) 1084, 1201, 1273
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 2 cut(s) 120, 911
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 6 cut(s) 271, 535, 719, 735, 836, 1113
BssMI GATC 6 cut(s) 6, 136, 184, 304, 832, 982
BssNAI GTATAC 1 cut(s) 809
BssT1I CCWWGG 4 cut(s) 271, 535, 735, 836
Bst1107I GTATAC 1 cut(s) 809
Bst2UI CCWGG 2 cut(s) 213, 855
Bst4CI ACNGT 4 cut(s) 44, 101, 514, 1096
Bst6I CTCTTC 2 cut(s) 392, 1200
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 91, 279
BstDEI CTNAG 4 cut(s) 188, 661, 813, 1248
BstDSI CCRYGG 1 cut(s) 719
BstF5I GGATG 2 cut(s) 455, 712
BstFNI CGCG 2 cut(s) 524, 1166
BstKTI GATC 6 cut(s) 9, 139, 187, 307, 835, 985
BstMAI GTCTC 3 cut(s) 98, 591, 1085
BstMBI GATC 6 cut(s) 6, 136, 184, 304, 832, 982
BstMWI GCNNNNNNNGC 3 cut(s) 574, 780, 1019
BstNI CCWGG 2 cut(s) 213, 855
BstNSI RCATGY 2 cut(s) 54, 807
BstSCI CCNGG 2 cut(s) 211, 853
BstSLI GKGCMC 2 cut(s) 933, 1024
BstUI CGCG 2 cut(s) 524, 1166
BstV1I GCAGC 4 cut(s) 5, 455, 563, 1114
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 1 cut(s) 832
BstYI RGATCY 1 cut(s) 832
BstZ17I GTATAC 1 cut(s) 809
Bsu36I CCTNAGG 1 cut(s) 813
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 5 cut(s) 93, 114, 342, 858, 1154
BtgI CCRYGG 1 cut(s) 719
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 2 cut(s) 455, 712
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 3 cut(s) 106, 127, 933
BveI ACCTGC 1 cut(s) 882
Cac8I GCNNGC 2 cut(s) 91, 279
Cfr10I RCCGGY 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 4 cut(s) 54, 160, 298, 1168
CspCI CAANNNNNGTGG 2 cut(s) 552, 587
CviAII CATG 6 cut(s) 51, 95, 108, 314, 804, 986
CviQI GTAC 4 cut(s) 54, 160, 298, 1168
DdeI CTNAG 4 cut(s) 188, 661, 813, 1248
DpnI GATC 6 cut(s) 8, 138, 186, 306, 834, 984
DpnII GATC 6 cut(s) 6, 136, 184, 304, 832, 982
EaeI YGGCCR 2 cut(s) 856, 1152
Eam1104I CTCTTC 2 cut(s) 392, 1200
EarI CTCTTC 2 cut(s) 392, 1200
Eco130I CCWWGG 4 cut(s) 271, 535, 735, 836
Eco147I AGGCCT 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 686, 963
Eco81I CCTNAGG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 211, 853
EcoT14I CCWWGG 4 cut(s) 271, 535, 735, 836
ErhI CCWWGG 4 cut(s) 271, 535, 735, 836
FaeI CATG 6 cut(s) 54, 98, 111, 317, 807, 989
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 2 cut(s) 540, 812
FatI CATG 6 cut(s) 50, 94, 107, 313, 803, 985
FauI CCCGC 4 cut(s) 517, 789, 1194, 1217
FauNDI CATATG 1 cut(s) 259
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 808
Fnu4HI GCNGC 7 cut(s) 16, 19, 444, 552, 859, 1085, 1128
FokI GGATG 2 cut(s) 462, 719
Fsp4HI GCNGC 7 cut(s) 16, 19, 444, 552, 859, 1085, 1128
FspBI CTAG 3 cut(s) 167, 536, 1025
GluI GCNGC 7 cut(s) 16, 19, 444, 552, 859, 1085, 1128
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 5 cut(s) 93, 114, 342, 858, 1154
HapII CCGG 1 cut(s) 157
Hin1II CATG 6 cut(s) 54, 98, 111, 317, 807, 989
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 2 cut(s) 1060, 1229
HpaI GTTAAC 1 cut(s) 561
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 1164, 1170
Hpy166II GTNNAC 4 cut(s) 40, 424, 561, 809
Hpy188I TCNGA 3 cut(s) 480, 671, 982
Hpy188III TCNNGA 3 cut(s) 458, 704, 919
Hpy8I GTNNAC 4 cut(s) 40, 424, 561, 809
HpyAV CCTTC 1 cut(s) 894
HpyCH4III ACNGT 4 cut(s) 44, 101, 514, 1096
HpyCH4IV ACGT 2 cut(s) 420, 681
HpyCH4V TGCA 9 cut(s) 371, 443, 464, 577, 635, 677, 851, 891, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 574, 780, 1019
HpyF3I CTNAG 4 cut(s) 188, 661, 813, 1248
HpySE526I ACGT 2 cut(s) 420, 681
Hsp92II CATG 6 cut(s) 54, 98, 111, 317, 807, 989
Ksp22I TGATCA 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 561
Kzo9I GATC 6 cut(s) 6, 136, 184, 304, 832, 982
LmnI GCTCC 3 cut(s) 286, 1081, 1213
Lsp1109I GCAGC 4 cut(s) 5, 455, 563, 1114
LweI GCATC 4 cut(s) 65, 159, 451, 813
MaeI CTAG 3 cut(s) 167, 536, 1025
MaeII ACGT 2 cut(s) 420, 681
MaeIII GTNAC 4 cut(s) 362, 514, 753, 1144
MalI GATC 6 cut(s) 8, 138, 186, 306, 834, 984
MbiI CCGCTC 3 cut(s) 1084, 1201, 1273
MboI GATC 6 cut(s) 6, 136, 184, 304, 832, 982
MboII GAAGA 6 cut(s) 140, 191, 409, 752, 832, 1217
MflI RGATCY 1 cut(s) 832
MhlI GDGCHC 4 cut(s) 933, 954, 1024, 1218
MluCI AATT 5 cut(s) 131, 243, 346, 404, 688
MluI ACGCGT 1 cut(s) 1164
MmeI TCCRAC 1 cut(s) 1017
MseI TTAA 4 cut(s) 242, 345, 560, 1031
MslI CAYNNNNRTG 2 cut(s) 99, 312
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 213, 855
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 213, 855
MvnI CGCG 2 cut(s) 524, 1166
MwoI GCNNNNNNNGC 3 cut(s) 574, 780, 1019
NdeI CATATG 1 cut(s) 259
NdeII GATC 6 cut(s) 6, 136, 184, 304, 832, 982
NlaIII CATG 6 cut(s) 54, 98, 111, 317, 807, 989
NlaIV GGNNCC 3 cut(s) 113, 194, 207
NmuCI GTSAC 3 cut(s) 362, 753, 1144
NspI RCATGY 2 cut(s) 54, 807
NspV TTCGAA 1 cut(s) 248
PceI AGGCCT 1 cut(s) 342
PciI ACATGT 1 cut(s) 803
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 1060, 1229
PflMI CCANNNNNTGG 1 cut(s) 996
PkrI GCNGC 7 cut(s) 17, 20, 445, 553, 860, 1086, 1129
PscI ACATGT 1 cut(s) 803
PsiI TTATAA 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 211, 853
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 211, 853
PspN4I GGNNCC 3 cut(s) 113, 194, 207
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 832
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 4 cut(s) 55, 161, 299, 1169
RsaNI GTAC 4 cut(s) 54, 160, 298, 1168
RseI CAYNNNNRTG 2 cut(s) 99, 312
SaqAI TTAA 4 cut(s) 242, 345, 560, 1031
SatI GCNGC 7 cut(s) 16, 19, 444, 552, 859, 1085, 1128
Sau3AI GATC 6 cut(s) 6, 136, 184, 304, 832, 982
Sau96I GGNCC 1 cut(s) 112
ScrFI CCNGG 2 cut(s) 213, 855
SduI GDGCHC 4 cut(s) 933, 954, 1024, 1218
SfaNI GCATC 4 cut(s) 65, 159, 451, 813
SfuI TTCGAA 1 cut(s) 248
SmiMI CAYNNNNRTG 2 cut(s) 99, 312
SmlI CTYRAG 2 cut(s) 29, 1219
SmoI CTYRAG 2 cut(s) 29, 1219
Sse9I AATT 5 cut(s) 131, 243, 346, 404, 688
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 8 cut(s) 15, 524, 796, 859, 1084, 1201, 1224, 1273
SspMI CTAG 3 cut(s) 167, 536, 1025
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 211, 853
StyI CCWWGG 4 cut(s) 271, 535, 735, 836
TaaI ACNGT 4 cut(s) 44, 101, 514, 1096
TaiI ACGT 2 cut(s) 423, 684
TaqI TCGA 2 cut(s) 5, 248
TasI AATT 5 cut(s) 131, 243, 346, 404, 688
TatI WGTACW 1 cut(s) 53
TauI GCSGC 3 cut(s) 18, 861, 1087
TfiI GAWTC 2 cut(s) 1060, 1229
Tru1I TTAA 4 cut(s) 242, 345, 560, 1031
Tru9I TTAA 4 cut(s) 242, 345, 560, 1031
TscAI CASTG 3 cut(s) 106, 127, 933
TseFI GTSAC 3 cut(s) 362, 753, 1144
TseI GCWGC 4 cut(s) 18, 443, 551, 1127
Tsp45I GTSAC 3 cut(s) 362, 753, 1144
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 2 cut(s) 736, 1200
TspRI CASTG 3 cut(s) 106, 127, 933
Van91I CCANNNNNTGG 1 cut(s) 996
XapI RAATTY 2 cut(s) 131, 404
XceI RCATGY 2 cut(s) 54, 807
XmaJI CCTAGG 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 808
XspI CTAG 3 cut(s) 167, 536, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.