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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g04690 |
| rosa_chinensis | RchiOBHm_Chr1g0384141 |
| rosa_laevigata | RLG00000026068 |
| rosa_multiflora | Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390 |
| rosa_rugosa | Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300 |
| rosa_samantha | Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200 |
| rosa_wichuraiana | Rw1G040180 Rw1G040190 Rw1G040200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 69 |
| Acc36I | ACCTGC | 1 cut(s) | 882 |
| AccB1I | GGYRCC | 1 cut(s) | 192 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 996 |
| AccBSI | CCGCTC | 3 cut(s) | 1084, 1201, 1273 |
| AccI | GTMKAC | 1 cut(s) | 808 |
| AccII | CGCG | 2 cut(s) | 524, 1166 |
| AciI | CCGC | 8 cut(s) | 15, 524, 796, 859, 1084, 1201, 1224, 1273 |
| AclWI | GGATC | 2 cut(s) | 131, 827 |
| AcoI | YGGCCR | 2 cut(s) | 856, 1152 |
| AcsI | RAATTY | 2 cut(s) | 131, 404 |
| AcuI | CTGAAG | 2 cut(s) | 686, 963 |
| AfaI | GTAC | 4 cut(s) | 55, 161, 299, 1169 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 85, 202, 215, 349, 938, 939, 996 |
| AflIII | ACRYGT | 2 cut(s) | 803, 1164 |
| AgsI | TTSAA | 4 cut(s) | 439, 658, 751, 1245 |
| AjnI | CCWGG | 2 cut(s) | 211, 853 |
| AluBI | AGCT | 7 cut(s) | 170, 281, 391, 446, 665, 1013, 1046 |
| AluI | AGCT | 7 cut(s) | 170, 281, 391, 446, 665, 1013, 1046 |
| Alw21I | GWGCWC | 2 cut(s) | 954, 1218 |
| Alw26I | GTCTC | 3 cut(s) | 98, 591, 1085 |
| AlwI | GGATC | 2 cut(s) | 131, 827 |
| AoxI | GGCC | 5 cut(s) | 91, 112, 340, 856, 1152 |
| ApeKI | GCWGC | 4 cut(s) | 18, 443, 551, 1127 |
| ApoI | RAATTY | 2 cut(s) | 131, 404 |
| AspA2I | CCTAGG | 1 cut(s) | 535 |
| AspS9I | GGNCC | 1 cut(s) | 112 |
| AsuHPI | GGTGA | 2 cut(s) | 1164, 1170 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvrII | CCTAGG | 1 cut(s) | 535 |
| AxyI | CCTNAGG | 1 cut(s) | 813 |
| BaeGI | GKGCMC | 2 cut(s) | 933, 1024 |
| BanI | GGYRCC | 1 cut(s) | 192 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 961, 993 |
| BbsI | GAAGAC | 1 cut(s) | 747 |
| Bbv12I | GWGCWC | 2 cut(s) | 954, 1218 |
| BbvI | GCAGC | 4 cut(s) | 5, 455, 563, 1114 |
| BccI | CCATC | 5 cut(s) | 404, 444, 932, 998, 1183 |
| BceAI | ACGGC | 4 cut(s) | 102, 741, 754, 1139 |
| BciT130I | CCWGG | 2 cut(s) | 213, 855 |
| BciVI | GTATCC | 1 cut(s) | 410 |
| BclI | TGATCA | 1 cut(s) | 304 |
| BcoDI | GTCTC | 3 cut(s) | 98, 591, 1085 |
| BfaI | CTAG | 3 cut(s) | 167, 536, 1025 |
| BfuAI | ACCTGC | 1 cut(s) | 882 |
| BfuI | GTATCC | 1 cut(s) | 410 |
| BisI | GCNGC | 7 cut(s) | 16, 19, 444, 552, 859, 1085, 1128 |
| BlnI | CCTAGG | 1 cut(s) | 535 |
| BlsI | GCNGC | 7 cut(s) | 17, 20, 445, 553, 860, 1086, 1129 |
| Bme1390I | CCNGG | 2 cut(s) | 213, 855 |
| BmgT120I | GGNCC | 1 cut(s) | 112 |
| BmiI | GGNNCC | 3 cut(s) | 113, 194, 207 |
| BmrFI | CCNGG | 2 cut(s) | 213, 855 |
| BmrI | ACTGGG | 1 cut(s) | 905 |
| BmsI | GCATC | 4 cut(s) | 65, 159, 451, 813 |
| BmuI | ACTGGG | 1 cut(s) | 905 |
| BpiI | GAAGAC | 1 cut(s) | 747 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 997, 1029, 1202, 1234 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BpuEI | CTTGAG | 2 cut(s) | 50, 1204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 309 |
| BsaJI | CCNNGG | 6 cut(s) | 271, 535, 719, 735, 836, 1113 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 85, 202, 215, 349, 938, 939, 996 |
| Bse118I | RCCGGY | 1 cut(s) | 156 |
| Bse1I | ACTGG | 2 cut(s) | 120, 911 |
| Bse21I | CCTNAGG | 1 cut(s) | 813 |
| Bse8I | GATNNNNATC | 1 cut(s) | 309 |
| BseBI | CCWGG | 2 cut(s) | 213, 855 |
| BseDI | CCNNGG | 6 cut(s) | 271, 535, 719, 735, 836, 1113 |
| BseGI | GGATG | 2 cut(s) | 455, 712 |
| BseJI | GATNNNNATC | 1 cut(s) | 309 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 85, 202, 215, 349, 938, 939, 996 |
| BseMII | CTCAG | 1 cut(s) | 804 |
| BseNI | ACTGG | 2 cut(s) | 120, 911 |
| BseRI | GAGGAG | 4 cut(s) | 830, 1130, 1223, 1226 |
| BseSI | GKGCMC | 2 cut(s) | 933, 1024 |
| BseXI | GCAGC | 4 cut(s) | 5, 455, 563, 1114 |
| BseYI | CCCAGC | 1 cut(s) | 391 |
| BsgI | GTGCAG | 1 cut(s) | 596 |
| Bsh1236I | CGCG | 2 cut(s) | 524, 1166 |
| BshFI | GGCC | 5 cut(s) | 93, 114, 342, 858, 1154 |
| BshNI | GGYRCC | 1 cut(s) | 192 |
| BsiHKAI | GWGCWC | 2 cut(s) | 954, 1218 |
| BsiSI | CCGG | 1 cut(s) | 157 |
| BslFI | GGGAC | 2 cut(s) | 540, 812 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 85, 202, 215, 349, 938, 939, 996 |
| BsmAI | GTCTC | 3 cut(s) | 98, 591, 1085 |
| BsmFI | GGGAC | 2 cut(s) | 540, 812 |
| BsmI | GAATGC | 1 cut(s) | 445 |
| BsnI | GGCC | 5 cut(s) | 93, 114, 342, 858, 1154 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp1286I | GDGCHC | 4 cut(s) | 933, 954, 1024, 1218 |
| Bsp143I | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| BspACI | CCGC | 8 cut(s) | 15, 524, 796, 859, 1084, 1201, 1224, 1273 |
| BspANI | GGCC | 5 cut(s) | 93, 114, 342, 858, 1154 |
| BspCNI | CTCAG | 1 cut(s) | 805 |
| BspFNI | CGCG | 2 cut(s) | 524, 1166 |
| BspLI | GGNNCC | 3 cut(s) | 113, 194, 207 |
| BspMI | ACCTGC | 1 cut(s) | 882 |
| BspPI | GGATC | 2 cut(s) | 131, 827 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BspT107I | GGYRCC | 1 cut(s) | 192 |
| BsrBI | CCGCTC | 3 cut(s) | 1084, 1201, 1273 |
| BsrFI | RCCGGY | 1 cut(s) | 156 |
| BsrI | ACTGG | 2 cut(s) | 120, 911 |
| BssAI | RCCGGY | 1 cut(s) | 156 |
| BssECI | CCNNGG | 6 cut(s) | 271, 535, 719, 735, 836, 1113 |
| BssMI | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| BssNAI | GTATAC | 1 cut(s) | 809 |
| BssT1I | CCWWGG | 4 cut(s) | 271, 535, 735, 836 |
| Bst1107I | GTATAC | 1 cut(s) | 809 |
| Bst2UI | CCWGG | 2 cut(s) | 213, 855 |
| Bst4CI | ACNGT | 4 cut(s) | 44, 101, 514, 1096 |
| Bst6I | CTCTTC | 2 cut(s) | 392, 1200 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 91, 279 |
| BstDEI | CTNAG | 4 cut(s) | 188, 661, 813, 1248 |
| BstDSI | CCRYGG | 1 cut(s) | 719 |
| BstF5I | GGATG | 2 cut(s) | 455, 712 |
| BstFNI | CGCG | 2 cut(s) | 524, 1166 |
| BstKTI | GATC | 6 cut(s) | 9, 139, 187, 307, 835, 985 |
| BstMAI | GTCTC | 3 cut(s) | 98, 591, 1085 |
| BstMBI | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 574, 780, 1019 |
| BstNI | CCWGG | 2 cut(s) | 213, 855 |
| BstNSI | RCATGY | 2 cut(s) | 54, 807 |
| BstSCI | CCNGG | 2 cut(s) | 211, 853 |
| BstSLI | GKGCMC | 2 cut(s) | 933, 1024 |
| BstUI | CGCG | 2 cut(s) | 524, 1166 |
| BstV1I | GCAGC | 4 cut(s) | 5, 455, 563, 1114 |
| BstV2I | GAAGAC | 1 cut(s) | 747 |
| BstX2I | RGATCY | 1 cut(s) | 832 |
| BstYI | RGATCY | 1 cut(s) | 832 |
| BstZ17I | GTATAC | 1 cut(s) | 809 |
| Bsu36I | CCTNAGG | 1 cut(s) | 813 |
| BsuI | GTATCC | 1 cut(s) | 410 |
| BsuRI | GGCC | 5 cut(s) | 93, 114, 342, 858, 1154 |
| BtgI | CCRYGG | 1 cut(s) | 719 |
| BtgZI | GCGATG | 1 cut(s) | 88 |
| BtsCI | GGATG | 2 cut(s) | 455, 712 |
| BtsI | GCAGTG | 1 cut(s) | 933 |
| BtsIMutI | CAGTG | 3 cut(s) | 106, 127, 933 |
| BveI | ACCTGC | 1 cut(s) | 882 |
| Cac8I | GCNNGC | 2 cut(s) | 91, 279 |
| Cfr10I | RCCGGY | 1 cut(s) | 156 |
| Cfr13I | GGNCC | 1 cut(s) | 112 |
| Csp6I | GTAC | 4 cut(s) | 54, 160, 298, 1168 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 552, 587 |
| CviAII | CATG | 6 cut(s) | 51, 95, 108, 314, 804, 986 |
| CviQI | GTAC | 4 cut(s) | 54, 160, 298, 1168 |
| DdeI | CTNAG | 4 cut(s) | 188, 661, 813, 1248 |
| DpnI | GATC | 6 cut(s) | 8, 138, 186, 306, 834, 984 |
| DpnII | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| EaeI | YGGCCR | 2 cut(s) | 856, 1152 |
| Eam1104I | CTCTTC | 2 cut(s) | 392, 1200 |
| EarI | CTCTTC | 2 cut(s) | 392, 1200 |
| Eco130I | CCWWGG | 4 cut(s) | 271, 535, 735, 836 |
| Eco147I | AGGCCT | 1 cut(s) | 342 |
| Eco57I | CTGAAG | 2 cut(s) | 686, 963 |
| Eco81I | CCTNAGG | 1 cut(s) | 813 |
| EcoO109I | RGGNCCY | 1 cut(s) | 112 |
| EcoRII | CCWGG | 2 cut(s) | 211, 853 |
| EcoT14I | CCWWGG | 4 cut(s) | 271, 535, 735, 836 |
| ErhI | CCWWGG | 4 cut(s) | 271, 535, 735, 836 |
| FaeI | CATG | 6 cut(s) | 54, 98, 111, 317, 807, 989 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 171, 203 |
| FaqI | GGGAC | 2 cut(s) | 540, 812 |
| FatI | CATG | 6 cut(s) | 50, 94, 107, 313, 803, 985 |
| FauI | CCCGC | 4 cut(s) | 517, 789, 1194, 1217 |
| FauNDI | CATATG | 1 cut(s) | 259 |
| FbaI | TGATCA | 1 cut(s) | 304 |
| FblI | GTMKAC | 1 cut(s) | 808 |
| Fnu4HI | GCNGC | 7 cut(s) | 16, 19, 444, 552, 859, 1085, 1128 |
| FokI | GGATG | 2 cut(s) | 462, 719 |
| Fsp4HI | GCNGC | 7 cut(s) | 16, 19, 444, 552, 859, 1085, 1128 |
| FspBI | CTAG | 3 cut(s) | 167, 536, 1025 |
| GluI | GCNGC | 7 cut(s) | 16, 19, 444, 552, 859, 1085, 1128 |
| GsaI | CCCAGC | 1 cut(s) | 395 |
| HaeIII | GGCC | 5 cut(s) | 93, 114, 342, 858, 1154 |
| HapII | CCGG | 1 cut(s) | 157 |
| Hin1II | CATG | 6 cut(s) | 54, 98, 111, 317, 807, 989 |
| HincII | GTYRAC | 1 cut(s) | 561 |
| HindII | GTYRAC | 1 cut(s) | 561 |
| HinfI | GANTC | 2 cut(s) | 1060, 1229 |
| HpaI | GTTAAC | 1 cut(s) | 561 |
| HpaII | CCGG | 1 cut(s) | 157 |
| HphI | GGTGA | 2 cut(s) | 1164, 1170 |
| Hpy166II | GTNNAC | 4 cut(s) | 40, 424, 561, 809 |
| Hpy188I | TCNGA | 3 cut(s) | 480, 671, 982 |
| Hpy188III | TCNNGA | 3 cut(s) | 458, 704, 919 |
| Hpy8I | GTNNAC | 4 cut(s) | 40, 424, 561, 809 |
| HpyAV | CCTTC | 1 cut(s) | 894 |
| HpyCH4III | ACNGT | 4 cut(s) | 44, 101, 514, 1096 |
| HpyCH4IV | ACGT | 2 cut(s) | 420, 681 |
| HpyCH4V | TGCA | 9 cut(s) | 371, 443, 464, 577, 635, 677, 851, 891, 1130 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 574, 780, 1019 |
| HpyF3I | CTNAG | 4 cut(s) | 188, 661, 813, 1248 |
| HpySE526I | ACGT | 2 cut(s) | 420, 681 |
| Hsp92II | CATG | 6 cut(s) | 54, 98, 111, 317, 807, 989 |
| Ksp22I | TGATCA | 1 cut(s) | 304 |
| KspAI | GTTAAC | 1 cut(s) | 561 |
| Kzo9I | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| LmnI | GCTCC | 3 cut(s) | 286, 1081, 1213 |
| Lsp1109I | GCAGC | 4 cut(s) | 5, 455, 563, 1114 |
| LweI | GCATC | 4 cut(s) | 65, 159, 451, 813 |
| MaeI | CTAG | 3 cut(s) | 167, 536, 1025 |
| MaeII | ACGT | 2 cut(s) | 420, 681 |
| MaeIII | GTNAC | 4 cut(s) | 362, 514, 753, 1144 |
| MalI | GATC | 6 cut(s) | 8, 138, 186, 306, 834, 984 |
| MbiI | CCGCTC | 3 cut(s) | 1084, 1201, 1273 |
| MboI | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| MboII | GAAGA | 6 cut(s) | 140, 191, 409, 752, 832, 1217 |
| MflI | RGATCY | 1 cut(s) | 832 |
| MhlI | GDGCHC | 4 cut(s) | 933, 954, 1024, 1218 |
| MluCI | AATT | 5 cut(s) | 131, 243, 346, 404, 688 |
| MluI | ACGCGT | 1 cut(s) | 1164 |
| MmeI | TCCRAC | 1 cut(s) | 1017 |
| MseI | TTAA | 4 cut(s) | 242, 345, 560, 1031 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 312 |
| MspA1I | CMGCKG | 1 cut(s) | 446 |
| MspI | CCGG | 1 cut(s) | 157 |
| MspR9I | CCNGG | 2 cut(s) | 213, 855 |
| Mva1269I | GAATGC | 1 cut(s) | 445 |
| MvaI | CCWGG | 2 cut(s) | 213, 855 |
| MvnI | CGCG | 2 cut(s) | 524, 1166 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 574, 780, 1019 |
| NdeI | CATATG | 1 cut(s) | 259 |
| NdeII | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| NlaIII | CATG | 6 cut(s) | 54, 98, 111, 317, 807, 989 |
| NlaIV | GGNNCC | 3 cut(s) | 113, 194, 207 |
| NmuCI | GTSAC | 3 cut(s) | 362, 753, 1144 |
| NspI | RCATGY | 2 cut(s) | 54, 807 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PceI | AGGCCT | 1 cut(s) | 342 |
| PciI | ACATGT | 1 cut(s) | 803 |
| PctI | GAATGC | 1 cut(s) | 445 |
| PfeI | GAWTC | 2 cut(s) | 1060, 1229 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 996 |
| PkrI | GCNGC | 7 cut(s) | 17, 20, 445, 553, 860, 1086, 1129 |
| PscI | ACATGT | 1 cut(s) | 803 |
| PsiI | TTATAA | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 211, 853 |
| PspFI | CCCAGC | 1 cut(s) | 391 |
| PspGI | CCWGG | 2 cut(s) | 211, 853 |
| PspN4I | GGNNCC | 3 cut(s) | 113, 194, 207 |
| PspPI | GGNCC | 1 cut(s) | 112 |
| PsuI | RGATCY | 1 cut(s) | 832 |
| PvuII | CAGCTG | 1 cut(s) | 446 |
| RsaI | GTAC | 4 cut(s) | 55, 161, 299, 1169 |
| RsaNI | GTAC | 4 cut(s) | 54, 160, 298, 1168 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 312 |
| SaqAI | TTAA | 4 cut(s) | 242, 345, 560, 1031 |
| SatI | GCNGC | 7 cut(s) | 16, 19, 444, 552, 859, 1085, 1128 |
| Sau3AI | GATC | 6 cut(s) | 6, 136, 184, 304, 832, 982 |
| Sau96I | GGNCC | 1 cut(s) | 112 |
| ScrFI | CCNGG | 2 cut(s) | 213, 855 |
| SduI | GDGCHC | 4 cut(s) | 933, 954, 1024, 1218 |
| SfaNI | GCATC | 4 cut(s) | 65, 159, 451, 813 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 312 |
| SmlI | CTYRAG | 2 cut(s) | 29, 1219 |
| SmoI | CTYRAG | 2 cut(s) | 29, 1219 |
| Sse9I | AATT | 5 cut(s) | 131, 243, 346, 404, 688 |
| SseBI | AGGCCT | 1 cut(s) | 342 |
| SsiI | CCGC | 8 cut(s) | 15, 524, 796, 859, 1084, 1201, 1224, 1273 |
| SspMI | CTAG | 3 cut(s) | 167, 536, 1025 |
| StuI | AGGCCT | 1 cut(s) | 342 |
| StyD4I | CCNGG | 2 cut(s) | 211, 853 |
| StyI | CCWWGG | 4 cut(s) | 271, 535, 735, 836 |
| TaaI | ACNGT | 4 cut(s) | 44, 101, 514, 1096 |
| TaiI | ACGT | 2 cut(s) | 423, 684 |
| TaqI | TCGA | 2 cut(s) | 5, 248 |
| TasI | AATT | 5 cut(s) | 131, 243, 346, 404, 688 |
| TatI | WGTACW | 1 cut(s) | 53 |
| TauI | GCSGC | 3 cut(s) | 18, 861, 1087 |
| TfiI | GAWTC | 2 cut(s) | 1060, 1229 |
| Tru1I | TTAA | 4 cut(s) | 242, 345, 560, 1031 |
| Tru9I | TTAA | 4 cut(s) | 242, 345, 560, 1031 |
| TscAI | CASTG | 3 cut(s) | 106, 127, 933 |
| TseFI | GTSAC | 3 cut(s) | 362, 753, 1144 |
| TseI | GCWGC | 4 cut(s) | 18, 443, 551, 1127 |
| Tsp45I | GTSAC | 3 cut(s) | 362, 753, 1144 |
| TspDTI | ATGAA | 1 cut(s) | 192 |
| TspGWI | ACGGA | 2 cut(s) | 736, 1200 |
| TspRI | CASTG | 3 cut(s) | 106, 127, 933 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 996 |
| XapI | RAATTY | 2 cut(s) | 131, 404 |
| XceI | RCATGY | 2 cut(s) | 54, 807 |
| XmaJI | CCTAGG | 1 cut(s) | 535 |
| XmiI | GTMKAC | 1 cut(s) | 808 |
| XspI | CTAG | 3 cut(s) | 167, 536, 1025 |