Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Forward (+)

39820 .. 41354

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggaaaagagcgaacgcgataacagtatggacgaaaattcgcaggagatcgacaacacatactacgaatctgaaactgtgttattcaagaagcaggatctctgcaaagaagagaatctgaaccaagtctggaagaaagaggtggaaacagtctttcaatctcatggcctttcatgcaaattgaactgggatgagggtaagatgactgtcagtgcaacaaaacgtactcaacgtactctgttccatgatatttttgacaggggttttaatgctctctctgttctggcatgtggtctcggcaccgaatgggttgaaccaatcgtctcgggttgtgtctatagtgatgtcatgtatatcagaataccagatggcatgagtgaggaagcagcggttgtcgtcctttccgataaagccgggtcaacaagcacagtgaggaatcttgtgtatagttgtctaattggcgatgacccttttgatgaagaccattttcatgaattgttccttgatgatctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.51

Weight (kDa)

4.45

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	2 cut(s)	226, 235
AgsI	TTSAA	4 cut(s)	88, 158, 184, 314
Alw26I	GTCTC	2 cut(s)	299, 328
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	37
AsuC2I	CCSGG	1 cut(s)	415
AvaI	CYCGRG	1 cut(s)	325
BanI	GGYRCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	362
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	299, 328
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	415
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	415
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	414
BsmAI	GTCTC	2 cut(s)	299, 328
BsmBI	CGTCTC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	48, 97, 508
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	168
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	105
BspT107I	GGYRCC	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	3 cut(s)	48, 97, 508
Bst4CI	ACNGT	5 cut(s)	26, 79, 151, 208, 430
Bst6I	CTCTTC	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	3 cut(s)	51, 100, 511
BstMAI	GTCTC	2 cut(s)	299, 328
BstMBI	GATC	3 cut(s)	48, 97, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	486
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	217, 435
CciI	TCATGA	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	225, 234
CviAII	CATG	7 cut(s)	164, 174, 245, 288, 349, 373, 491
CviJI	RGCY	2 cut(s)	168, 413
CviKI_1	RGCY	2 cut(s)	168, 413
CviQI	GTAC	2 cut(s)	225, 234
DpnI	GATC	3 cut(s)	50, 99, 510
DpnII	GATC	3 cut(s)	48, 97, 508
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	7 cut(s)	167, 177, 248, 291, 352, 376, 494
FatI	CATG	7 cut(s)	163, 173, 244, 287, 348, 372, 490
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	7 cut(s)	167, 177, 248, 291, 352, 376, 494
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	68, 115, 436
HpaII	CCGG	1 cut(s)	414
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	4 cut(s)	73, 120, 359, 406
Hpy188III	TCNNGA	3 cut(s)	88, 130, 491
Hpy8I	GTNNAC	1 cut(s)	420
HpyCH4III	ACNGT	5 cut(s)	26, 79, 151, 208, 430
HpyCH4IV	ACGT	2 cut(s)	223, 232
HpyCH4V	TGCA	3 cut(s)	105, 177, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	2 cut(s)	223, 232
Hsp92II	CATG	7 cut(s)	167, 177, 248, 291, 352, 376, 494
Kzo9I	GATC	3 cut(s)	48, 97, 508
LpnPI	CCDG	8 cut(s)	29, 80, 115, 172, 244, 269, 378, 427
Lsp1109I	GCAGC	1 cut(s)	398
MaeII	ACGT	2 cut(s)	223, 232
MalI	GATC	3 cut(s)	50, 99, 510
MboI	GATC	3 cut(s)	48, 97, 508
MboII	GAAGA	3 cut(s)	122, 145, 491
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	4 cut(s)	37, 179, 456, 494
MnlI	CCTC	4 cut(s)	133, 187, 373, 426
MseI	TTAA	2 cut(s)	267, 514
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	415
NdeII	GATC	3 cut(s)	48, 97, 508
NlaIII	CATG	7 cut(s)	167, 177, 248, 291, 352, 376, 494
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	276
NspI	RCATGY	1 cut(s)	291
PagI	TCATGA	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	2 cut(s)	229, 402
PfeI	GAWTC	3 cut(s)	68, 115, 436
PkrI	GCNGC	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	226, 235
RsaNI	GTAC	2 cut(s)	225, 234
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	267, 514
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	48, 97, 508
ScrFI	CCNGG	1 cut(s)	415
SetI	ASST	3 cut(s)	144, 226, 235
SfcI	CTRYAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	4 cut(s)	37, 179, 456, 494
SsiI	CCGC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	413
TaaI	ACNGT	5 cut(s)	26, 79, 151, 208, 430
TaiI	ACGT	2 cut(s)	226, 235
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	37, 179, 456, 494
TfiI	GAWTC	3 cut(s)	68, 115, 436
Tru1I	TTAA	2 cut(s)	267, 514
Tru9I	TTAA	2 cut(s)	267, 514
TscAI	CASTG	2 cut(s)	217, 435
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	4 cut(s)	162, 479, 492, 507
TspRI	CASTG	2 cut(s)	217, 435
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.