Rh1AG470700

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004243
Physical Location & Seq
Reverse (-)
68324282 .. 68345206
20925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG470700.1

Sequence Viewer

Length: 600 bp
ATGGAAAAGAGCGAGAGCGATAACAGTATGGACGAAAATTCGCAGAAGATCGACAACACTGGCTACGAATCGATGACTCTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTTAGTGCAACAGAACGTACCCTGGACCGAAGGATCATTTACAGGGGTGCACGTGCTCTCTGTGTTCTGGCATGTGGTCTTGGCACTGAATGGGTTGAACCAATCGTCTCCGGCAGTGTCCATAGTGATGTCATGAAAATTAAAGTACCAGATGGCATGACTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATATTCAAATTTGAAGACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCTGTTGTTGTTCTTTCCGATAAAGCCGGGTCAACAAGTATAGTGAGGAATCTTGTGACTAGTTGTCTTCTTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.61

Weight (kDa)

4.7

Isoelectric Point (pI)

30.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 36 - 94 5.7e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 248, 545
AcsI RAATTY 3 cut(s) 37, 410, 422
AcvI CACGTG 1 cut(s) 260
AfaI GTAC 2 cut(s) 226, 354
AgsI TTSAA 7 cut(s) 88, 158, 184, 305, 384, 409, 416
AhdI GACNNNNNGTC 1 cut(s) 534
AhlI ACTAGT 1 cut(s) 530
AjnI CCWGG 1 cut(s) 228
AjuI GAANNNNNNNTTGG 2 cut(s) 408, 440
AluBI AGCT 2 cut(s) 442, 473
AluI AGCT 2 cut(s) 442, 473
Alw21I GWGCWC 2 cut(s) 259, 265
Alw26I GTCTC 2 cut(s) 104, 319
Alw44I GTGCAC 1 cut(s) 255
AlwI GGATC 2 cut(s) 248, 545
AoxI GGCC 1 cut(s) 166
ApaLI GTGCAC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 3 cut(s) 37, 410, 422
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 499
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 259
BbrPI CACGTG 1 cut(s) 260
BbsI GAAGAC 3 cut(s) 423, 530, 570
Bbv12I GWGCWC 2 cut(s) 259, 265
BbvI GCAGC 1 cut(s) 482
BccI CCATC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 230
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 104, 319
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 1 cut(s) 531
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 2 cut(s) 230, 499
Bme18I GGWCC 1 cut(s) 232
BmeRI GACNNNNNGTC 1 cut(s) 534
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 230, 499
BmrI ACTGGG 1 cut(s) 196
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 3 cut(s) 423, 530, 570
BpuMI CCSGG 1 cut(s) 499
Bsa29I ATCGAT 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 64, 191
BseBI CCWGG 1 cut(s) 230
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 196, 379
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 64, 191
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 1 cut(s) 482
BshFI GGCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 259, 265
BsiSI CCGG 2 cut(s) 318, 498
BsmAI GTCTC 2 cut(s) 104, 319
BsmBI CGTCTC 1 cut(s) 319
BsnI GGCC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 2 cut(s) 259, 265
Bsp143I GATC 3 cut(s) 48, 240, 550
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 361
BspDI ATCGAT 1 cut(s) 71
BspHI TCATGA 3 cut(s) 339, 394, 574
BspPI GGATC 2 cut(s) 248, 545
BspTNI GGTCTC 1 cut(s) 104
BsrI ACTGG 2 cut(s) 64, 191
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 3 cut(s) 48, 240, 550
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 3 cut(s) 26, 151, 208
Bst6I CTCTTC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 196, 379
BstKTI GATC 3 cut(s) 51, 243, 553
BstMAI GTCTC 2 cut(s) 104, 319
BstMBI GATC 3 cut(s) 48, 240, 550
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstNI CCWGG 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 228, 497
BstSLI GKGCMC 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 482
BstV2I GAAGAC 3 cut(s) 423, 530, 570
Bsu15I ATCGAT 1 cut(s) 71
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 2 cut(s) 196, 379
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 57, 291, 328
CciI TCATGA 3 cut(s) 339, 394, 574
Cfr13I GGNCC 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 71
Csp6I GTAC 2 cut(s) 225, 353
CviAII CATG 7 cut(s) 164, 174, 279, 340, 364, 395, 575
CviJI RGCY 5 cut(s) 63, 168, 442, 473, 497
CviKI_1 RGCY 5 cut(s) 63, 168, 442, 473, 497
CviQI GTAC 2 cut(s) 225, 353
DdeI CTNAG 1 cut(s) 369
DpnI GATC 3 cut(s) 50, 242, 552
DpnII GATC 3 cut(s) 48, 240, 550
DriI GACNNNNNGTC 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 232
Eco72I CACGTG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 7 cut(s) 167, 177, 282, 343, 367, 398, 578
FatI CATG 7 cut(s) 163, 173, 278, 339, 363, 394, 574
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 2 cut(s) 203, 386
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 531
GluI GCNGC 1 cut(s) 471
HaeIII GGCC 1 cut(s) 168
HapII CCGG 2 cut(s) 318, 498
Hin1II CATG 7 cut(s) 167, 177, 282, 343, 367, 398, 578
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 5 cut(s) 68, 76, 115, 158, 520
HpaII CCGG 2 cut(s) 318, 498
Hpy166II GTNNAC 2 cut(s) 257, 504
Hpy188I TCNGA 2 cut(s) 120, 490
Hpy188III TCNNGA 6 cut(s) 88, 130, 340, 395, 464, 575
Hpy8I GTNNAC 2 cut(s) 257, 504
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 3 cut(s) 26, 151, 208
HpyCH4IV ACGT 2 cut(s) 223, 259
HpyCH4V TGCA 3 cut(s) 105, 215, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 223, 259
Hsp92II CATG 7 cut(s) 167, 177, 282, 343, 367, 398, 578
Kzo9I GATC 3 cut(s) 48, 240, 550
Lsp1109I GCAGC 1 cut(s) 482
MaeI CTAG 1 cut(s) 531
MaeII ACGT 2 cut(s) 223, 259
MaeIII GTNAC 1 cut(s) 526
MalI GATC 3 cut(s) 50, 242, 552
MboI GATC 3 cut(s) 48, 240, 550
MboII GAAGA 6 cut(s) 58, 122, 145, 428, 530, 575
MhlI GDGCHC 2 cut(s) 259, 265
MluCI AATT 6 cut(s) 37, 179, 345, 410, 422, 578
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 4 cut(s) 133, 364, 444, 510
MseI TTAA 2 cut(s) 348, 598
MslI CAYNNNNRTG 2 cut(s) 333, 573
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 2 cut(s) 318, 498
MspR9I CCNGG 2 cut(s) 230, 499
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 499
NdeII GATC 3 cut(s) 48, 240, 550
NlaIII CATG 7 cut(s) 167, 177, 282, 343, 367, 398, 578
NmuCI GTSAC 1 cut(s) 526
NspI RCATGY 1 cut(s) 282
PagI TCATGA 3 cut(s) 339, 394, 574
PfeI GAWTC 4 cut(s) 68, 115, 158, 520
PkrI GCNGC 1 cut(s) 472
PleI GAGTC 1 cut(s) 70
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 228
PspCI CACGTG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 228
PspPI GGNCC 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 2 cut(s) 226, 354
RsaNI GTAC 2 cut(s) 225, 353
RseI CAYNNNNRTG 2 cut(s) 333, 573
SaqAI TTAA 2 cut(s) 348, 598
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 3 cut(s) 48, 240, 550
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 230, 499
SduI GDGCHC 2 cut(s) 259, 265
SetI ASST 6 cut(s) 144, 226, 262, 436, 444, 475
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 333, 573
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 6 cut(s) 37, 179, 345, 410, 422, 578
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 2 cut(s) 228, 497
TaaI ACNGT 3 cut(s) 26, 151, 208
TaiI ACGT 2 cut(s) 226, 262
TaqI TCGA 3 cut(s) 51, 71, 436
TaqII GACCGA 1 cut(s) 249
TasI AATT 6 cut(s) 37, 179, 345, 410, 422, 578
TfiI GAWTC 4 cut(s) 68, 115, 158, 520
Tru1I TTAA 2 cut(s) 348, 598
Tru9I TTAA 2 cut(s) 348, 598
TscAI CASTG 3 cut(s) 64, 298, 328
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 6 cut(s) 162, 356, 391, 563, 576, 591
TspRI CASTG 3 cut(s) 64, 298, 328
VneI GTGCAC 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 3 cut(s) 37, 410, 422
XceI RCATGY 1 cut(s) 282
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.