Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Forward (+)

53119 .. 54697

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggacgaaaattcgcagaagatcgacaacactggctacgagtcaatgactctgttattcaagaagcatggtctctgcagtacgttcctcgatctctttgttcttattctcacctttgaagaagagaatctgaaccaagtctggaagaaagaggtggaaacagtctttgaatctcatggcctttcatgcaaattgaactgggatgagtgtaagatgactgttagtgcaacagaacgtaccctggaccgaaggatcatttacaggggtgcacgtgctctctttgttctggcatgtggtcttggcactgaatgggttgaaccaatcgtctccggcagtgtccatagtgatgtcatgaaaattaaaataccagatggcatgactgaggatgatttttcaagcaagtatcatgatttcatattcaaatttgaagacaaatttgtactacctcgaaagctgtcctgctttgttctctatcatgaagcagctgttgttgttctttccgataaagccgggtcaacaagtatagtgaggaatcttgtgactagttgtcttcttggcgatgatccttttgatgaagaccattttcatgaattgttccttgatgatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

23.24

Weight (kDa)

4.84

Isoelectric Point (pI)

28.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	260, 557
AcsI	RAATTY	3 cut(s)	10, 422, 434
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	82, 238, 441
AgsI	TTSAA	8 cut(s)	61, 119, 170, 196, 317, 396, 421, 428
AhdI	GACNNNNNGTC	1 cut(s)	546
AhlI	ACTAGT	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	454, 485
AluI	AGCT	2 cut(s)	454, 485
Alw21I	GWGCWC	2 cut(s)	271, 277
Alw26I	GTCTC	2 cut(s)	77, 331
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	260, 557
AoxI	GGCC	1 cut(s)	178
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	3 cut(s)	10, 422, 434
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	271
BbrPI	CACGTG	1 cut(s)	272
BbsI	GAAGAC	3 cut(s)	435, 542, 582
Bbv12I	GWGCWC	2 cut(s)	271, 277
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	77, 331
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	2 cut(s)	242, 511
Bme18I	GGWCC	1 cut(s)	244
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	242, 511
BmrI	ACTGGG	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	208
BpiI	GAAGAC	3 cut(s)	435, 542, 582
BpuMI	CCSGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	37, 203
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	208, 391
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	2 cut(s)	37, 203
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	494
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	2 cut(s)	271, 277
BsiSI	CCGG	2 cut(s)	330, 510
BsmAI	GTCTC	2 cut(s)	77, 331
BsmBI	CGTCTC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	271, 277
Bsp143I	GATC	4 cut(s)	21, 91, 252, 562
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	373
BspHI	TCATGA	4 cut(s)	351, 406, 475, 586
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	2 cut(s)	260, 557
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	2 cut(s)	37, 203
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	21, 91, 252, 562
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	163, 220
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	208, 391
BstKTI	GATC	4 cut(s)	24, 94, 255, 565
BstMAI	GTCTC	2 cut(s)	77, 331
BstMBI	GATC	4 cut(s)	21, 91, 252, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	240, 509
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	3 cut(s)	435, 542, 582
BsuRI	GGCC	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	208, 391
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	3 cut(s)	30, 303, 340
CciI	TCATGA	4 cut(s)	351, 406, 475, 586
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	81, 237, 440
CviAII	CATG	9 cut(s)	68, 176, 186, 291, 352, 376, 407, 476, 587
CviJI	RGCY	5 cut(s)	36, 180, 454, 485, 509
CviKI_1	RGCY	5 cut(s)	36, 180, 454, 485, 509
CviQI	GTAC	3 cut(s)	81, 237, 440
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	4 cut(s)	23, 93, 254, 564
DpnII	GATC	4 cut(s)	21, 91, 252, 562
DriI	GACNNNNNGTC	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	117
Eam1105I	GACNNNNNGTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	9 cut(s)	71, 179, 189, 294, 355, 379, 410, 479, 590
FatI	CATG	9 cut(s)	67, 175, 185, 290, 351, 375, 406, 475, 586
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	2 cut(s)	215, 398
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	330, 510
Hin1II	CATG	9 cut(s)	71, 179, 189, 294, 355, 379, 410, 479, 590
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HinfI	GANTC	5 cut(s)	41, 49, 127, 170, 532
HpaII	CCGG	2 cut(s)	330, 510
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	269, 516
Hpy188I	TCNGA	2 cut(s)	132, 502
Hpy188III	TCNNGA	6 cut(s)	61, 142, 352, 407, 476, 587
Hpy8I	GTNNAC	2 cut(s)	269, 516
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	163, 220
HpyCH4IV	ACGT	3 cut(s)	83, 235, 271
HpyCH4V	TGCA	4 cut(s)	78, 189, 227, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	3 cut(s)	83, 235, 271
Hsp92II	CATG	9 cut(s)	71, 179, 189, 294, 355, 379, 410, 479, 590
Kzo9I	GATC	4 cut(s)	21, 91, 252, 562
Lsp1109I	GCAGC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	3 cut(s)	83, 235, 271
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	4 cut(s)	23, 93, 254, 564
MboI	GATC	4 cut(s)	21, 91, 252, 562
MboII	GAAGA	7 cut(s)	31, 131, 134, 157, 440, 542, 587
MhlI	GDGCHC	2 cut(s)	271, 277
MluCI	AATT	6 cut(s)	10, 191, 357, 422, 434, 590
MlyI	GAGTC	2 cut(s)	43, 50
MnlI	CCTC	5 cut(s)	98, 145, 376, 456, 522
MseI	TTAA	2 cut(s)	360, 610
MslI	CAYNNNNRTG	2 cut(s)	345, 585
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	2 cut(s)	330, 510
MspR9I	CCNGG	2 cut(s)	242, 511
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	4 cut(s)	21, 91, 252, 562
NlaIII	CATG	9 cut(s)	71, 179, 189, 294, 355, 379, 410, 479, 590
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	294
PagI	TCATGA	4 cut(s)	351, 406, 475, 586
PfeI	GAWTC	3 cut(s)	127, 170, 532
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	43, 49
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	43, 49
Ppu21I	YACGTR	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	240
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	3 cut(s)	82, 238, 441
RsaNI	GTAC	3 cut(s)	81, 237, 440
RseI	CAYNNNNRTG	2 cut(s)	345, 585
SaqAI	TTAA	2 cut(s)	360, 610
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	4 cut(s)	21, 91, 252, 562
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	43, 50
ScrFI	CCNGG	2 cut(s)	242, 511
SduI	GDGCHC	2 cut(s)	271, 277
SetI	ASST	8 cut(s)	86, 116, 156, 238, 274, 448, 456, 487
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	345, 585
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	6 cut(s)	10, 191, 357, 422, 434, 590
SspMI	CTAG	1 cut(s)	543
StyD4I	CCNGG	2 cut(s)	240, 509
TaaI	ACNGT	2 cut(s)	163, 220
TaiI	ACGT	3 cut(s)	86, 238, 274
TaqI	TCGA	3 cut(s)	24, 90, 448
TaqII	GACCGA	1 cut(s)	261
TasI	AATT	6 cut(s)	10, 191, 357, 422, 434, 590
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	3 cut(s)	127, 170, 532
Tru1I	TTAA	2 cut(s)	360, 610
Tru9I	TTAA	2 cut(s)	360, 610
TscAI	CASTG	3 cut(s)	37, 310, 340
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	538
TspDTI	ATGAA	7 cut(s)	174, 368, 403, 492, 575, 588, 603
TspRI	CASTG	3 cut(s)	37, 310, 340
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	3 cut(s)	10, 422, 434
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.