Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Forward (+)

376679 .. 378787

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAAAAGAGCGAACGCGATAACAGTATGGACGAAAATTCGCAGGAGATGGACAACACATACTACGAATCTGAAACTGTGTTATTCAAGAAGCAGGATCTCTGCAATAGTGTGAATGAATATGAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCAAATTGAACTGGGATGAGGGTAAGATGACTGTCAGTGCAACAAAACGTACTCAACGTACTCTGTTCCATGATATCTTTGACAGGGGTTTCAATGCTCTCTCTGTTCTGGCATGTGGTCTCGGCACTGAATGGGTTGAACCAATCGTCTCGGGCTGTGTCTATAGTGATGTCATGTATATCAGAATACCAGATGGCATGAGTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATAGACAAATTTGAACACAAATTTGGACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTATCAAGAAGCAGCGGTTGTCGTCCTTTCCGATAAAGCCGGGTCAACAAGTACAGTGAGGAATCTTGTGTATAGTTGTCTAATTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.03

Weight (kDa)

4.5

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	500
AclWI	GGATC	2 cut(s)	105, 572
AcsI	RAATTY	3 cut(s)	37, 437, 449
AfaI	GTAC	3 cut(s)	244, 253, 538
AgsI	TTSAA	7 cut(s)	88, 176, 202, 286, 332, 411, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	1 cut(s)	469
AluI	AGCT	1 cut(s)	469
Alw26I	GTCTC	2 cut(s)	317, 346
AlwI	GGATC	2 cut(s)	105, 572
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	3 cut(s)	37, 437, 449
AsuC2I	CCSGG	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	597
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	2 cut(s)	43, 380
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	2 cut(s)	317, 346
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	526
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	214, 406
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	317, 346
BsmBI	CGTCTC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	97, 577, 619
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	2 cut(s)	421, 601
BspPI	GGATC	2 cut(s)	105, 572
BspTNI	GGTCTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	3 cut(s)	97, 577, 619
Bst4CI	ACNGT	5 cut(s)	26, 79, 169, 226, 541
Bst6I	CTCTTC	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	214, 406
BstFNI	CGCG	1 cut(s)	18
BstKTI	GATC	3 cut(s)	100, 580, 622
BstMAI	GTCTC	2 cut(s)	317, 346
BstMBI	GATC	3 cut(s)	97, 577, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	355
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	509
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	214, 406
BtsIMutI	CAGTG	3 cut(s)	235, 318, 546
CciI	TCATGA	2 cut(s)	421, 601
Csp6I	GTAC	3 cut(s)	243, 252, 537
CviAII	CATG	8 cut(s)	182, 192, 263, 306, 367, 391, 422, 602
CviJI	RGCY	4 cut(s)	186, 348, 469, 524
CviKI_1	RGCY	4 cut(s)	186, 348, 469, 524
CviQI	GTAC	3 cut(s)	243, 252, 537
DpnI	GATC	3 cut(s)	99, 579, 621
DpnII	GATC	3 cut(s)	97, 577, 619
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco31I	GGTCTC	1 cut(s)	317
Eco32I	GATATC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	346
FaeI	CATG	8 cut(s)	185, 195, 266, 309, 370, 394, 425, 605
FatI	CATG	8 cut(s)	181, 191, 262, 305, 366, 390, 421, 601
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	2 cut(s)	221, 413
Fsp4HI	GCNGC	1 cut(s)	498
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	8 cut(s)	185, 195, 266, 309, 370, 394, 425, 605
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	4 cut(s)	68, 133, 176, 547
HpaII	CCGG	1 cut(s)	525
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	4 cut(s)	73, 138, 377, 517
Hpy188III	TCNNGA	5 cut(s)	88, 148, 422, 491, 602
Hpy8I	GTNNAC	1 cut(s)	531
HpyCH4III	ACNGT	5 cut(s)	26, 79, 169, 226, 541
HpyCH4IV	ACGT	2 cut(s)	241, 250
HpyCH4V	TGCA	3 cut(s)	105, 195, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	241, 250
Hsp92II	CATG	8 cut(s)	185, 195, 266, 309, 370, 394, 425, 605
Kzo9I	GATC	3 cut(s)	97, 577, 619
LpnPI	CCDG	9 cut(s)	29, 80, 133, 190, 262, 287, 396, 487, 538
Lsp1109I	GCAGC	1 cut(s)	509
MaeII	ACGT	2 cut(s)	241, 250
MalI	GATC	3 cut(s)	99, 579, 621
MboI	GATC	3 cut(s)	97, 577, 619
MboII	GAAGA	4 cut(s)	137, 140, 163, 602
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	6 cut(s)	37, 197, 437, 449, 567, 605
MnlI	CCTC	5 cut(s)	151, 205, 391, 471, 537
MseI	TTAA	1 cut(s)	625
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	526
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	526
NdeII	GATC	3 cut(s)	97, 577, 619
NlaIII	CATG	8 cut(s)	185, 195, 266, 309, 370, 394, 425, 605
NmeAIII	GCCGAG	1 cut(s)	294
NspI	RCATGY	1 cut(s)	309
PagI	TCATGA	2 cut(s)	421, 601
PcsI	WCGNNNNNNNCGW	2 cut(s)	247, 513
PfeI	GAWTC	4 cut(s)	68, 133, 176, 547
PkrI	GCNGC	1 cut(s)	499
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	3 cut(s)	244, 253, 538
RsaNI	GTAC	3 cut(s)	243, 252, 537
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	625
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	3 cut(s)	97, 577, 619
ScrFI	CCNGG	1 cut(s)	526
SetI	ASST	5 cut(s)	162, 244, 253, 463, 471
SfcI	CTRYAG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	600
Sse9I	AATT	6 cut(s)	37, 197, 437, 449, 567, 605
SsiI	CCGC	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	524
TaaI	ACNGT	5 cut(s)	26, 79, 169, 226, 541
TaiI	ACGT	2 cut(s)	244, 253
TaqI	TCGA	1 cut(s)	463
TasI	AATT	6 cut(s)	37, 197, 437, 449, 567, 605
TatI	WGTACW	1 cut(s)	536
TfiI	GAWTC	4 cut(s)	68, 133, 176, 547
Tru1I	TTAA	1 cut(s)	625
Tru9I	TTAA	1 cut(s)	625
TscAI	CASTG	3 cut(s)	235, 325, 546
TseI	GCWGC	1 cut(s)	497
TspDTI	ATGAA	7 cut(s)	132, 138, 180, 418, 590, 603, 618
TspRI	CASTG	3 cut(s)	235, 325, 546
XapI	RAATTY	3 cut(s)	37, 437, 449
XceI	RCATGY	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.