Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Reverse (-)

54565915 .. 54567476

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG428100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGACGAAAATTCGCAGAAGATCGACAACACTGGCTACGAGTCAATGACTCTGTTATTCAAGAAGCATGGCCTCTGCAGTACGTTCCTCGATCTCTTTGTTCTTATTCTCACCTTTGGTTTTGTTGAACCAATCGTCTCCGGCAGTGTCCATAGTGATGTCATGAAAATTAAAATACCAGATGGCATGACTGAGGATGATTTTTCAAGCAAGTATCATGATTTCATATTCAAATTTGAAGACAAATTTGTACTACCTCGAAAGCTGTCCTGCTTTGTTCTTTACCATGAAGCAGCTGTTGTTGTTCTTTCCGATAAAGCCGGGTCAACAAGTATAGTGAGGAATCTTGTGACTAGTTGTCTTCTTGGCGATGATCCTTTTGATGAAGACCATTTTCATGAATTGTTCCTTGATGATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.94

Weight (kDa)

4.66

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	10, 233, 245
AfaI	GTAC	2 cut(s)	82, 252
AgsI	TTSAA	5 cut(s)	61, 128, 207, 232, 239
AhdI	GACNNNNNGTC	1 cut(s)	357
AhlI	ACTAGT	1 cut(s)	353
AluBI	AGCT	2 cut(s)	265, 296
AluI	AGCT	2 cut(s)	265, 296
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	3 cut(s)	10, 233, 245
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	103
BbsI	GAAGAC	3 cut(s)	246, 353, 393
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	322
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	322
BpiI	GAAGAC	3 cut(s)	246, 353, 393
BpuMI	CCSGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	305
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	141, 321
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	21, 91, 373
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	184
BspHI	TCATGA	3 cut(s)	162, 217, 397
BspMAI	CTGCAG	1 cut(s)	80
BspPI	GGATC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	21, 91, 373
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	24, 94, 376
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	21, 91, 373
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	3 cut(s)	246, 353, 393
BsuRI	GGCC	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	30, 151
CciI	TCATGA	3 cut(s)	162, 217, 397
Csp6I	GTAC	2 cut(s)	81, 251
CviAII	CATG	6 cut(s)	68, 163, 187, 218, 287, 398
CviJI	RGCY	5 cut(s)	36, 72, 265, 296, 320
CviKI_1	RGCY	5 cut(s)	36, 72, 265, 296, 320
CviQI	GTAC	2 cut(s)	81, 251
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	23, 93, 375
DpnII	GATC	3 cut(s)	21, 91, 373
DriI	GACNNNNNGTC	1 cut(s)	357
Eam1105I	GACNNNNNGTC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	6 cut(s)	71, 166, 190, 221, 290, 401
FaiI	YATR	9 cut(s)	69, 153, 164, 188, 219, 227, 288, 335, 399
FatI	CATG	6 cut(s)	67, 162, 186, 217, 286, 397
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	2 cut(s)	141, 321
Hin1II	CATG	6 cut(s)	71, 166, 190, 221, 290, 401
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	3 cut(s)	41, 49, 343
HpaII	CCGG	2 cut(s)	141, 321
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	4 cut(s)	61, 163, 218, 398
Hpy8I	GTNNAC	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	71, 166, 190, 221, 290, 401
Kzo9I	GATC	3 cut(s)	21, 91, 373
LpnPI	CCDG	5 cut(s)	18, 154, 192, 283, 334
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	23, 93, 375
MboI	GATC	3 cut(s)	21, 91, 373
MboII	GAAGA	4 cut(s)	31, 251, 353, 398
MluCI	AATT	5 cut(s)	10, 168, 233, 245, 401
MlyI	GAGTC	2 cut(s)	43, 50
MnlI	CCTC	5 cut(s)	83, 98, 187, 267, 333
MseI	TTAA	2 cut(s)	171, 421
MslI	CAYNNNNRTG	2 cut(s)	156, 396
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	141, 321
MspR9I	CCNGG	1 cut(s)	322
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	21, 91, 373
NlaIII	CATG	6 cut(s)	71, 166, 190, 221, 290, 401
NmuCI	GTSAC	1 cut(s)	349
PagI	TCATGA	3 cut(s)	162, 217, 397
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	43, 49
PpsI	GAGTC	2 cut(s)	43, 49
PstI	CTGCAG	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	2 cut(s)	82, 252
RsaNI	GTAC	2 cut(s)	81, 251
RseI	CAYNNNNRTG	2 cut(s)	156, 396
SaqAI	TTAA	2 cut(s)	171, 421
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	21, 91, 373
SchI	GAGTC	2 cut(s)	43, 50
ScrFI	CCNGG	1 cut(s)	322
SetI	ASST	5 cut(s)	86, 116, 259, 267, 298
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	156, 396
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	5 cut(s)	10, 168, 233, 245, 401
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	320
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	24, 90, 259
TasI	AATT	5 cut(s)	10, 168, 233, 245, 401
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	171, 421
Tru9I	TTAA	2 cut(s)	171, 421
TscAI	CASTG	2 cut(s)	37, 151
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	6 cut(s)	179, 214, 303, 386, 399, 414
TspRI	CASTG	2 cut(s)	37, 151
XapI	RAATTY	3 cut(s)	10, 233, 245
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.