Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014419.1

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Reverse (-)

2112 .. 3765

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014419.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgaatgcctataaataccctcctctaccaaatcctccaaaatacggagacgtctggaattccaagagcgataacagcatgggcgaaaattcgcaggagatttacgaatctaaaactgtgttattcaagaagcagggtctctgcaaagaagagaatctgaaccaagtctggaagaaagaggtggaagcagtctttgaatctcatggcctttcatgcgaattgaactgggatgagtgtaagatgactgtcactgcaacagaacgtaccgaaggtggtcttcttcaagatggctttgataggggttttaatgctctctttgttctggcatgtggtctcggcactgaatgggttgaaccaatcgtctccggcagtgtctatagtgatgtcatgtatattagaataccagatggcatgagtcaggaagcatctgttgtcgtcatttccgataaagccgggtcaacaagtacagtgaggaatcttgtgtatagttgtctaaatagcgatgatccttttgatgaagaccattttcatgaattgttccttgatgatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

4.42

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	2 cut(s)	58, 88
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	265, 466
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	127, 197, 223, 284, 353
Alw26I	GTCTC	4 cut(s)	42, 143, 338, 367
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	58, 88
AsuC2I	CCSGG	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	269, 525
BccI	CCATC	2 cut(s)	281, 401
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	4 cut(s)	42, 143, 338, 367
BfmI	CTRYAG	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	2 cut(s)	269, 525
BpuMI	CCSGG	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	2 cut(s)	143, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	366, 453
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	4 cut(s)	42, 143, 338, 367
BsmBI	CGTCTC	2 cut(s)	42, 367
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	2 cut(s)	143, 338
Bsp143I	GATC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	529
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	2 cut(s)	143, 338
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	505
BssNI	GRCGYC	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	118, 247, 469
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	4 cut(s)	42, 143, 338, 367
BstMBI	GATC	1 cut(s)	505
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 213
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	376
BstV2I	GAAGAC	2 cut(s)	269, 525
BsuRI	GGCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	2 cut(s)	249, 376
BtsIMutI	CAGTG	4 cut(s)	249, 339, 376, 474
CciI	TCATGA	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	264, 465
CviAII	CATG	7 cut(s)	79, 203, 213, 327, 388, 412, 530
CviJI	RGCY	3 cut(s)	207, 291, 452
CviKI_1	RGCY	3 cut(s)	207, 291, 452
CviQI	GTAC	2 cut(s)	264, 465
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	2 cut(s)	143, 338
EcoRI	GAATTC	1 cut(s)	58
Esp3I	CGTCTC	2 cut(s)	42, 367
FaeI	CATG	7 cut(s)	82, 206, 216, 330, 391, 415, 533
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	7 cut(s)	78, 202, 212, 326, 387, 411, 529
FokI	GGATG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	2 cut(s)	366, 453
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	7 cut(s)	82, 206, 216, 330, 391, 415, 533
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	5 cut(s)	107, 154, 197, 415, 475
HpaII	CCGG	2 cut(s)	366, 453
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	159, 445
Hpy188III	TCNNGA	6 cut(s)	55, 127, 169, 284, 419, 530
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	3 cut(s)	118, 247, 469
HpyCH4IV	ACGT	2 cut(s)	51, 262
HpyCH4V	TGCA	2 cut(s)	144, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 213
HpySE526I	ACGT	2 cut(s)	51, 262
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	7 cut(s)	82, 206, 216, 330, 391, 415, 533
Kzo9I	GATC	1 cut(s)	505
LweI	GCATC	1 cut(s)	434
MaeII	ACGT	2 cut(s)	51, 262
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	5 cut(s)	161, 184, 269, 272, 530
MluCI	AATT	4 cut(s)	58, 88, 218, 533
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	5 cut(s)	30, 33, 45, 172, 465
MseI	TTAA	2 cut(s)	306, 553
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	2 cut(s)	366, 453
MspR9I	CCNGG	1 cut(s)	454
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	75, 213
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	1 cut(s)	505
NlaIII	CATG	7 cut(s)	82, 206, 216, 330, 391, 415, 533
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	330
PagI	TCATGA	1 cut(s)	529
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	4 cut(s)	107, 154, 197, 475
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
RsaI	GTAC	2 cut(s)	265, 466
RsaNI	GTAC	2 cut(s)	264, 465
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	306, 553
Sau3AI	GATC	1 cut(s)	505
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	454
SetI	ASST	4 cut(s)	54, 183, 265, 274
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	4 cut(s)	58, 88, 218, 533
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	3 cut(s)	118, 247, 469
TaiI	ACGT	2 cut(s)	54, 265
TasI	AATT	4 cut(s)	58, 88, 218, 533
TatI	WGTACW	1 cut(s)	464
TfiI	GAWTC	4 cut(s)	107, 154, 197, 475
Tru1I	TTAA	2 cut(s)	306, 553
Tru9I	TTAA	2 cut(s)	306, 553
TscAI	CASTG	4 cut(s)	256, 346, 376, 474
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	5 cut(s)	17, 201, 518, 531, 546
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	4 cut(s)	256, 346, 376, 474
XapI	RAATTY	2 cut(s)	58, 88
XceI	RCATGY	1 cut(s)	330
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.