Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004243

Physical Location & Seq

Genomic Coordinates Forward (+)

349479 .. 350799

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00276890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAAACAGCGAGAGCGATAACAGCATGGGCGAAAATTCACAGGAGATTTACGAATCTGAAACTGTGTTATTCAAGAAGCAGGGTCTCTGCAAAGAAGAGAATCTGAACCAAGTCTGGAAGAAAGAGGTGGAAACAGTCTTTGAATCTCATGGCCTTTCATGCGAATTGAACTGGGATGAGTGTAAGATGACTGTCACGGCAACAGAACATACTGAAGGTGGTCTTCTTCAAGATGGCTTTGACAGGGGTTTTAATGCTCTCTTTGTTCTGGCATGTGGTCTCGGCACTGAATGGGTTGAACCAATCGTCTCCGGTATTGTCTATAGTGATGTCATGAATATTATAATACCAGATGGCATGAGTCAGGCTAATTTCTTTGCCTCCAGGCGCGGAACTACGTTATTGTCTGCAGGGGTCCGGACCAGCCTTAGCATTTGTGTAGATTCAATATCAGAGAGCCAAAAGGCTGCTAATCAAACTGAATATGAAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.38

Weight (kDa)

4.27

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004243)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04690
rosa_chinensis	RchiOBHm_Chr1g0384141
rosa_laevigata	RLG00000026068
rosa_multiflora	Rmu_sc0005139.1_g000009 Rmu_sc0005139.1_g000011 Rmu_sc0005139.1_g000012 Rmu_sc0005139.1_g000014 Rmu_sc0005139.1_g000015 Rmu_sc0014419.1_g000002 Rmu_sc0014419.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276890 Rroxscaffold_4G00276900 Rroxscaffold_4G00276920 Rroxscaffold_4G00276950 Rroxscaffold_6G00397390
rosa_rugosa	Rorug01G0445100 Rorug01G0445200 Rorug01G0445200 Rorug01G0445300
rosa_samantha	Rh1AG470700 Rh1AG470800 Rh1BG428100 Rh1BG428200 Rh1BG428300 Rh1BG428400 Rh1CG440800 Rh1CG441000 Rh1CG441100 Rh1DG461100 Rh1DG461200
rosa_wichuraiana	Rw1G040180 Rw1G040190 Rw1G040200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccII	CGCG	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	237
AgsI	TTSAA	6 cut(s)	76, 146, 172, 233, 302, 450
AjnI	CCWGG	1 cut(s)	386
Alw26I	GTCTC	3 cut(s)	92, 287, 316
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	418, 423
AvaII	GGWCC	2 cut(s)	418, 423
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	2 cut(s)	230, 350
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	92, 287, 316
BfmI	CTRYAG	2 cut(s)	325, 411
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	2 cut(s)	418, 423
BmgT120I	GGNCC	2 cut(s)	418, 423
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	388
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	431
BsaI	GGTCTC	2 cut(s)	92, 287
BsaWI	WCCGGW	2 cut(s)	314, 420
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	315, 421
BsmAI	GTCTC	3 cut(s)	92, 287, 316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	2 cut(s)	92, 287
Bsp13I	TCCGGA	1 cut(s)	420
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	1 cut(s)	156
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	419
BspMAI	CTGCAG	1 cut(s)	415
BspTNI	GGTCTC	2 cut(s)	92, 287
BsrI	ACTGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	3 cut(s)	67, 139, 196
Bst6I	CTCTTC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	393
BstMAI	GTCTC	3 cut(s)	92, 287, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 162
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	325, 411
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	288
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	2 cut(s)	418, 423
CviAII	CATG	6 cut(s)	28, 152, 162, 276, 337, 361
CviJI	RGCY	6 cut(s)	156, 240, 371, 429, 462, 470
CviKI_1	RGCY	6 cut(s)	156, 240, 371, 429, 462, 470
DdeI	CTNAG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	92, 287
Eco47I	GGWCC	2 cut(s)	418, 423
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	386
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	6 cut(s)	31, 155, 165, 279, 340, 364
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	6 cut(s)	27, 151, 161, 275, 336, 360
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	471
GlaI	GCGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	315, 421
HhaI	GCGC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	31, 155, 165, 279, 340, 364
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HinfI	GANTC	5 cut(s)	56, 103, 146, 364, 446
HpaII	CCGG	2 cut(s)	315, 421
Hpy188I	TCNGA	3 cut(s)	61, 108, 457
Hpy188III	TCNNGA	5 cut(s)	76, 118, 233, 337, 421
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	67, 139, 196
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	2 cut(s)	93, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 162
HpyF3I	CTNAG	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	401
Hsp92II	CATG	6 cut(s)	31, 155, 165, 279, 340, 364
HspAI	GCGC	1 cut(s)	391
Kpn2I	TCCGGA	1 cut(s)	420
Lsp1109I	GCAGC	1 cut(s)	457
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	110, 133, 218, 221
MluCI	AATT	3 cut(s)	37, 167, 373
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	2 cut(s)	121, 394
MroI	TCCGGA	1 cut(s)	420
MseI	TTAA	2 cut(s)	255, 499
MspI	CCGG	2 cut(s)	315, 421
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	24, 162
NlaIII	CATG	6 cut(s)	31, 155, 165, 279, 340, 364
NlaIV	GGNNCC	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	279
PagI	TCATGA	1 cut(s)	336
PfeI	GAWTC	4 cut(s)	56, 103, 146, 446
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	2 cut(s)	418, 423
PstI	CTGCAG	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	255, 499
SatI	GCNGC	1 cut(s)	471
Sau96I	GGNCC	2 cut(s)	418, 423
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	388
SetI	ASST	3 cut(s)	132, 223, 404
SfcI	CTRYAG	2 cut(s)	325, 411
SinI	GGWCC	2 cut(s)	418, 423
Sse9I	AATT	3 cut(s)	37, 167, 373
SsiI	CCGC	1 cut(s)	393
SspI	AATATT	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	67, 139, 196
TaiI	ACGT	1 cut(s)	404
TasI	AATT	3 cut(s)	37, 167, 373
TfiI	GAWTC	4 cut(s)	56, 103, 146, 446
Tru1I	TTAA	2 cut(s)	255, 499
Tru9I	TTAA	2 cut(s)	255, 499
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	150, 353
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	418, 423
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.