Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019331.1

Orthogroup ID

OG0011593

Physical Location & Seq

Genomic Coordinates Reverse (-)

7981 .. 11004

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019331.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggaagagaacgatactggagatggccaagaaagagtggagcccaccagttttcagctcgggtcctcacgtcagcgcgacgacggcgtactgaatgcattacaggaattgagaatgagggaaggaatagcttttattcgacgaccttcgacagttttgcaacataaaatggttagtgaaggtgacgagggttataatgtggctctgaaacaacgaagttcccgtgattttaaggacattttcaactggaagaatttcatggaagtcttaaaagatgatatcatggttatagagtcactcccaccggagcttgcagacctgaagcctctccccagggctccagtttcctggtccaagcagcacaaagtgctcaaattcacgtacacagattccagacttgctaatgatcttggtggttcattccaaaagctacgctgccgtgcaatgtttgaggcactgagattctcacctgaaatcgaacaactagcatcaaagttggttaacagattaaagaacaacaatagtagatacattggtctccatttaagatatgaaaaggacatgctttctttcacaggctgcagtcacaatctgaccaaagacgaagatagagaactcgcaaaaataaggaaacaaacatcacactggaagcataagacgattaatagcaccaatcatagactccaaggggtatgccccatgaccccaagagaggttgctgtgtttcttgaagcaattgggtttcctttggatacaaaagtttatgtagccgctgggaagatctacgggagagatgggattagacctctgaaagataagtaccccaatttattcttccactcaaatttagcgactgaagtagagttgcaacctttcaagaacttgcagaaccagcttgctgccttggattacattttggctttggagagtgatgtgttcatttattcttttgatggaaatatggctaaagcaataaaagggcatcgacgatttgaagggttccggaagacgatcaaccccaacaaacaacaatttgtgacattgattgataggttggacaacggaatgatatcttgggaaaaattctcatccaaggtgaagaagttgcatgaaaatcggatcggagcaccatactccagagtagccagaggtgaccacaaacttgaggagaacttttacgcaaacccttttccgggttgcatctgtgaaaattccggaggctcatcaacagtagccaagcaacaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

415

Amino Acids

47.62

Weight (kDa)

9.26

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011593)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g23800
malus_domestica	MD01G1145300.v1.1 MD07G1212400.v1.1
prunus_persica	Prupe.2G244700_v2.0.a1 Prupe.2G244700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0369171
rosa_laevigata	RLG00000027149
rosa_multiflora	Rmu_co8502183.1_g000001 Rmu_sc0019331.1_g000002
rosa_roxburghii	Rroxscaffold_4G00287920
rosa_rugosa	Rorug01G0348400 Rorug01G0348400 Rorug01G0348500 Rorug01G0348500 Rorug01G0348500
rosa_samantha	Rh1AG355600 Rh1BG319200 Rh1CG333200 Rh1DG349900
rosa_wichuraiana	Rw1G031380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	2 cut(s)	1002, 1214
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	1 cut(s)	1127
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	5 cut(s)	253, 374, 844, 1082, 1210
AcuI	CTGAAG	2 cut(s)	341, 876
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	3 cut(s)	90, 383, 821
AfiI	CCNNNNNNNGG	3 cut(s)	712, 1192, 1193
AgsI	TTSAA	4 cut(s)	244, 731, 877, 995
AjiI	CACGTC	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	332, 347
AjuI	GAANNNNNNNTTGG	4 cut(s)	818, 850, 1057, 1089
AluBI	AGCT	5 cut(s)	58, 131, 310, 430, 895
AluI	AGCT	5 cut(s)	58, 131, 310, 430, 895
Alw21I	GWGCWC	2 cut(s)	372, 1129
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	1 cut(s)	1127
Ama87I	CYCGRG	1 cut(s)	59
Aor13HI	TCCGGA	2 cut(s)	1002, 1214
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	358, 435, 579, 899
ApoI	RAATTY	5 cut(s)	253, 374, 844, 1082, 1210
AseI	ATTAAT	1 cut(s)	663
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	63, 351
AsuC2I	CCSGG	1 cut(s)	1194
AsuHPI	GGTGA	4 cut(s)	194, 459, 1108, 1163
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	63, 351
BaeI	ACNNNNGTAYC	4 cut(s)	520, 553, 744, 777
BalI	TGGCCA	1 cut(s)	27
BanII	GRGCYC	2 cut(s)	45, 340
BbsI	GAAGAC	1 cut(s)	1013
Bbv12I	GWGCWC	2 cut(s)	372, 1129
BbvI	GCAGC	4 cut(s)	370, 422, 566, 886
BccI	CCATC	3 cut(s)	17, 788, 947
BceAI	ACGGC	2 cut(s)	100, 423
BcgI	CGANNNNNNTGC	4 cut(s)	139, 173, 1097, 1131
BciT130I	CCWGG	2 cut(s)	334, 349
BciVI	GTATCC	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	1194
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	485
BfmI	CTRYAG	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	780
BisI	GCNGC	5 cut(s)	359, 436, 580, 771, 900
BlsI	GCNGC	5 cut(s)	360, 437, 581, 772, 901
Bme1390I	CCNGG	3 cut(s)	334, 349, 1194
Bme18I	GGWCC	2 cut(s)	63, 351
BmeT110I	CYCGRG	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	63, 351
BmiI	GGNNCC	4 cut(s)	42, 64, 339, 1001
BmrFI	CCNGG	3 cut(s)	334, 349, 1194
BmsI	GCATC	3 cut(s)	497, 991, 1209
BpiI	GAAGAC	1 cut(s)	1013
BpmI	CTGGAG	3 cut(s)	39, 324, 1120
BpuEI	CTTGAG	1 cut(s)	1184
BpuMI	CCSGG	1 cut(s)	1194
BsaAI	YACGTR	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	5 cut(s)	332, 333, 685, 903, 1092
BsaWI	WCCGGW	3 cut(s)	304, 1002, 1214
Bsc4I	CCNNNNNNNGG	3 cut(s)	712, 1192, 1193
Bse1I	ACTGG	5 cut(s)	22, 48, 251, 341, 650
Bse3DI	GCAATG	1 cut(s)	450
BseAI	TCCGGA	2 cut(s)	1002, 1214
BseBI	CCWGG	2 cut(s)	334, 349
BseDI	CCNNGG	5 cut(s)	332, 333, 685, 903, 1092
BseGI	GGATG	1 cut(s)	1088
BseLI	CCNNNNNNNGG	3 cut(s)	712, 1192, 1193
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	5 cut(s)	22, 48, 251, 341, 650
BseRI	GAGGAG	1 cut(s)	1181
BseXI	GCAGC	4 cut(s)	370, 422, 566, 886
BseYI	CCCAGC	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	372, 1129
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	4 cut(s)	305, 1003, 1193, 1215
BslI	CCNNNNNNNGG	3 cut(s)	712, 1192, 1193
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	4 cut(s)	45, 340, 372, 1129
Bsp13I	TCCGGA	2 cut(s)	1002, 1214
Bsp143I	GATC	4 cut(s)	406, 780, 1011, 1119
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	450
BspEI	TCCGGA	2 cut(s)	1002, 1214
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	42, 64, 339, 1001
BspMAI	CTGCAG	1 cut(s)	584
BspPI	GGATC	1 cut(s)	1127
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	5 cut(s)	22, 48, 251, 341, 650
BssECI	CCNNGG	5 cut(s)	332, 333, 685, 903, 1092
BssMI	GATC	4 cut(s)	406, 780, 1011, 1119
BssT1I	CCWWGG	3 cut(s)	685, 903, 1092
Bst2UI	CCWGG	2 cut(s)	334, 349
Bst4CI	ACNGT	2 cut(s)	154, 1231
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	312, 897
BstDEI	CTNAG	1 cut(s)	458
BstEII	GGTNACC	1 cut(s)	1151
BstF5I	GGATG	1 cut(s)	1088
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	4 cut(s)	409, 783, 1014, 1122
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	4 cut(s)	406, 780, 1011, 1119
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 367, 892
BstNI	CCWGG	2 cut(s)	334, 349
BstNSI	RCATGY	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	1151
BstSCI	CCNGG	3 cut(s)	332, 347, 1192
BstSFI	CTRYAG	1 cut(s)	580
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	4 cut(s)	370, 422, 566, 886
BstV2I	GAAGAC	1 cut(s)	1013
BstX2I	RGATCY	1 cut(s)	780
BstXI	CCANNNNNNTGG	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	780
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	1088
BtsIMutI	CAGTG	2 cut(s)	455, 643
Cac8I	GCNNGC	2 cut(s)	312, 897
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	63, 351
Csp6I	GTAC	3 cut(s)	89, 382, 820
CviAII	CATG	5 cut(s)	259, 283, 562, 700, 1109
CviQI	GTAC	3 cut(s)	89, 382, 820
DdeI	CTNAG	1 cut(s)	458
DpnI	GATC	4 cut(s)	408, 782, 1013, 1121
DpnII	GATC	4 cut(s)	406, 780, 1011, 1119
DraIII	CACNNNGTG	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	25
Eco130I	CCWWGG	3 cut(s)	685, 903, 1092
Eco24I	GRGCYC	2 cut(s)	45, 340
Eco31I	GGTCTC	1 cut(s)	542
Eco32I	GATATC	2 cut(s)	280, 1071
Eco47I	GGWCC	2 cut(s)	63, 351
Eco57I	CTGAAG	2 cut(s)	341, 876
Eco88I	CYCGRG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	1151
EcoO109I	RGGNCCY	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	1151
EcoRII	CCWGG	2 cut(s)	332, 347
EcoRV	GATATC	2 cut(s)	280, 1071
EcoT14I	CCWWGG	3 cut(s)	685, 903, 1092
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	2 cut(s)	45, 340
ErhI	CCWWGG	3 cut(s)	685, 903, 1092
FaeI	CATG	5 cut(s)	262, 286, 565, 703, 1112
FatI	CATG	5 cut(s)	258, 282, 561, 699, 1108
Fnu4HI	GCNGC	5 cut(s)	359, 436, 580, 771, 900
FokI	GGATG	1 cut(s)	1075
FriOI	GRGCYC	2 cut(s)	45, 340
Fsp4HI	GCNGC	5 cut(s)	359, 436, 580, 771, 900
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	5 cut(s)	359, 436, 580, 771, 900
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	3 cut(s)	39, 324, 1120
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	4 cut(s)	305, 1003, 1193, 1215
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	5 cut(s)	262, 286, 565, 703, 1112
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	4 cut(s)	293, 389, 462, 681
HpaI	GTTAAC	1 cut(s)	502
HpaII	CCGG	4 cut(s)	305, 1003, 1193, 1215
HphI	GGTGA	4 cut(s)	194, 459, 1108, 1163
Hpy166II	GTNNAC	2 cut(s)	384, 502
Hpy188I	TCNGA	5 cut(s)	207, 594, 810, 1119, 1124
Hpy188III	TCNNGA	6 cut(s)	393, 728, 877, 1003, 1137, 1215
Hpy8I	GTNNAC	2 cut(s)	384, 502
Hpy99I	CGWCG	4 cut(s)	83, 86, 144, 990
HpyAV	CCTTC	4 cut(s)	116, 156, 173, 989
HpyCH4III	ACNGT	2 cut(s)	154, 1231
HpyCH4IV	ACGT	2 cut(s)	70, 380
HpyCH4V	TGCA	9 cut(s)	98, 160, 314, 443, 582, 868, 886, 1108, 1200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 367, 892
HpyF3I	CTNAG	1 cut(s)	458
HpySE526I	ACGT	2 cut(s)	70, 380
Hsp92II	CATG	5 cut(s)	262, 286, 565, 703, 1112
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	2 cut(s)	1002, 1214
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	4 cut(s)	406, 780, 1011, 1119
LmnI	GCTCC	4 cut(s)	40, 307, 343, 1124
Lsp1109I	GCAGC	4 cut(s)	370, 422, 566, 886
LweI	GCATC	3 cut(s)	497, 991, 1209
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	2 cut(s)	70, 380
MaeIII	GTNAC	5 cut(s)	182, 294, 584, 1036, 1151
MalI	GATC	4 cut(s)	408, 782, 1013, 1121
MboI	GATC	4 cut(s)	406, 780, 1011, 1119
MboII	GAAGA	7 cut(s)	17, 262, 617, 790, 826, 1018, 1111
MfeI	CAATTG	1 cut(s)	735
MflI	RGATCY	1 cut(s)	780
MhlI	GDGCHC	4 cut(s)	45, 340, 372, 1129
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	9 cut(s)	107, 253, 374, 735, 826, 844, 1031, 1082, 1210
MluNI	TGGCCA	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	302, 675
MmeI	TCCRAC	1 cut(s)	1035
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	2 cut(s)	1002, 1214
MroXI	GAANNNNTTC	1 cut(s)	254
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	6 cut(s)	231, 269, 501, 509, 545, 663
Msp20I	TGGCCA	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	4 cut(s)	305, 1003, 1193, 1215
MspR9I	CCNGG	3 cut(s)	334, 349, 1194
MunI	CAATTG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	2 cut(s)	334, 349
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	84, 367, 892
NciI	CCSGG	1 cut(s)	1194
NdeII	GATC	4 cut(s)	406, 780, 1011, 1119
NlaIII	CATG	5 cut(s)	262, 286, 565, 703, 1112
NlaIV	GGNNCC	4 cut(s)	42, 64, 339, 1001
NmuCI	GTSAC	5 cut(s)	182, 294, 584, 1036, 1151
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	565
PasI	CCCWGGG	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PctI	GAATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	389, 462
PkrI	GCNGC	5 cut(s)	360, 437, 581, 772, 901
PleI	GAGTC	2 cut(s)	301, 675
PpsI	GAGTC	2 cut(s)	301, 675
Ppu21I	YACGTR	1 cut(s)	381
PpuMI	RGGWCCY	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	663
PsiI	TTATAA	1 cut(s)	195
Psp5II	RGGWCCY	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	332, 347
PspEI	GGTNACC	1 cut(s)	1151
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	2 cut(s)	332, 347
PspN4I	GGNNCC	4 cut(s)	42, 64, 339, 1001
PspPI	GGNCC	2 cut(s)	63, 351
PspPPI	RGGWCCY	1 cut(s)	63
PstI	CTGCAG	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	780
RsaI	GTAC	3 cut(s)	90, 383, 821
RsaNI	GTAC	3 cut(s)	89, 382, 820
SaqAI	TTAA	6 cut(s)	231, 269, 501, 509, 545, 663
SatI	GCNGC	5 cut(s)	359, 436, 580, 771, 900
Sau3AI	GATC	4 cut(s)	406, 780, 1011, 1119
Sau96I	GGNCC	2 cut(s)	63, 351
SchI	GAGTC	2 cut(s)	302, 675
ScrFI	CCNGG	3 cut(s)	334, 349, 1194
SduI	GDGCHC	4 cut(s)	45, 340, 372, 1129
SfaNI	GCATC	3 cut(s)	497, 991, 1209
SfcI	CTRYAG	1 cut(s)	580
SinI	GGWCC	2 cut(s)	63, 351
SmlI	CTYRAG	1 cut(s)	1163
SmoI	CTYRAG	1 cut(s)	1163
Sse9I	AATT	9 cut(s)	107, 253, 374, 735, 826, 844, 1031, 1082, 1210
SsiI	CCGC	1 cut(s)	771
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	332, 347, 1192
StyI	CCWWGG	3 cut(s)	685, 903, 1092
TaaI	ACNGT	2 cut(s)	154, 1231
TaiI	ACGT	2 cut(s)	73, 383
TaqI	TCGA	4 cut(s)	139, 149, 477, 985
TasI	AATT	9 cut(s)	107, 253, 374, 735, 826, 844, 1031, 1082, 1210
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	2 cut(s)	389, 462
Tru1I	TTAA	6 cut(s)	231, 269, 501, 509, 545, 663
Tru9I	TTAA	6 cut(s)	231, 269, 501, 509, 545, 663
TscAI	CASTG	2 cut(s)	462, 650
TseFI	GTSAC	5 cut(s)	182, 294, 584, 1036, 1151
TseI	GCWGC	4 cut(s)	358, 435, 579, 899
Tsp45I	GTSAC	5 cut(s)	182, 294, 584, 1036, 1151
TspDTI	ATGAA	5 cut(s)	247, 408, 567, 928, 1125
TspGWI	ACGGA	1 cut(s)	1077
TspRI	CASTG	2 cut(s)	462, 650
VpaK11BI	GGWCC	2 cut(s)	63, 351
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	5 cut(s)	253, 374, 844, 1082, 1210
XceI	RCATGY	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	254
XspI	CTAG	1 cut(s)	485
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.