Rorug01G0348400

GDP-fucose protein O-fucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001936
Physical Location & Seq
Reverse (-)
46627403 .. 46630319
2917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0348400.1

Sequence Viewer

Length: 795 bp
ATGACAATGAGCAACAACGTTAACCAGTTCGGCGACACGACATTGACCAAAGTCTTCGTCGGAGGGCTGGCCTGGGAGACTCCCAAGGAGGCTCTGAGAGAGCACTTCGACAAGTACGGTGAGATCTTGGAGGCCGTCATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGCTTCGTGACGTTCAAGGAGGCTGAAGCGGCTAAGAAGGCTTGCGAGGACGCCACGCCGGTCATCAACGGCCGCCGTGCCAACTGCAACCTGGCCTCTCTCGGGGCTCGCCGCCCTAGGTCGGCTTCCACCACCACTCCTCCTCCTCAACGAGTATCAAATGGTGGAGGACCAAGGTCTATGTCACCGGCGCCGGCACCTGCAAATCACGTGCAATGGTACTACCCGGCAGGGACTCCAGCAGCAGCTTCTGTACCATTTCATCACCAGCATCATCAGGCTGTTCCATTCTATGGATACTCCCCAACCTACATTGCAACTGATATGGGCTACAATCACAAGCTGGGATACAGTACTGGTGGGAGTTACATGAATGGGCATTACTCTCCTCAAGTGTACCATAGCCACCAGCCTATGGTTGGTCCAAACACATTGATGCCAATGTACCCTCTTTACCATTATCACCATCAATCACATACAATGGGGTTACCTGCCCAATTCTTCCCCCCAACCACCGCAGGTCACGTCGCAACGGTCCCGGCAATCATGTCAAAACCGGCCTCAATTGCTCCCAATAACACAGGGAACAGTTGGCCGAGATCAGGAGAGGTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

264

Amino Acids

28.67

Weight (kDa)

9.24

Isoelectric Point (pI)

56.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 18 - 75 3.3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 3 cut(s) 385, 676, 686
AccB1I GGYRCC 2 cut(s) 367, 373
AccB7I CCANNNNNTGG 2 cut(s) 470, 592
AciI CCGC 4 cut(s) 206, 250, 289, 693
AclI AACGTT 1 cut(s) 18
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 2 cut(s) 247, 770
AcuI CTGAAG 1 cut(s) 222
AcvI CACGTG 1 cut(s) 388
AcyI GRCGYC 2 cut(s) 228, 368
AfaI GTAC 6 cut(s) 116, 398, 432, 532, 575, 623
AfiI CCNNNNNNNGG 6 cut(s) 279, 298, 470, 592, 596, 779
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 2 cut(s) 71, 267
AluBI AGCT 3 cut(s) 154, 425, 520
AluI AGCT 3 cut(s) 154, 425, 520
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 6 cut(s) 69, 132, 247, 270, 735, 770
ApeKI GCWGC 2 cut(s) 419, 422
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 3 cut(s) 347, 599, 712
AsuC2I CCSGG 2 cut(s) 404, 716
AsuHPI GGTGA 5 cut(s) 131, 148, 354, 434, 632
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 3 cut(s) 347, 599, 712
AvrII CCTAGG 1 cut(s) 293
BanI GGYRCC 2 cut(s) 367, 373
BanII GRGCYC 1 cut(s) 286
BbrPI CACGTG 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 431, 434
BccI CCATC 1 cut(s) 651
BceAI ACGGC 4 cut(s) 119, 193, 237, 262
BciT130I CCWGG 2 cut(s) 73, 269
BciVI GTATCC 2 cut(s) 467, 518
BcnI CCSGG 2 cut(s) 404, 716
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 371
BfuAI ACCTGC 3 cut(s) 385, 676, 686
BfuI GTATCC 2 cut(s) 467, 518
BglII AGATCT 1 cut(s) 123
BisI GCNGC 5 cut(s) 207, 250, 289, 420, 423
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 208, 251, 290, 421, 424
BmcAI AGTACT 1 cut(s) 532
Bme1390I CCNGG 4 cut(s) 73, 269, 404, 716
Bme18I GGWCC 3 cut(s) 347, 599, 712
BmeT110I CYCGRG 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 347, 599, 712
BmiI GGNNCC 3 cut(s) 369, 375, 714
BmrFI CCNGG 4 cut(s) 73, 269, 404, 716
BmsI GCATC 2 cut(s) 457, 603
BoxI GACNNNNGTC 2 cut(s) 50, 352
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 552
BpuMI CCSGG 2 cut(s) 404, 716
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 2 cut(s) 228, 368
BsaJI CCNNGG 5 cut(s) 72, 84, 168, 293, 350
BsaXI ACNNNNNCTCC 6 cut(s) 298, 301, 304, 328, 331, 334
Bsc4I CCNNNNNNNGG 6 cut(s) 279, 298, 470, 592, 596, 779
Bse118I RCCGGY 5 cut(s) 158, 235, 364, 370, 733
Bse1I ACTGG 2 cut(s) 25, 538
Bse3DI GCAATG 2 cut(s) 398, 489
BseBI CCWGG 2 cut(s) 73, 269
BseDI CCNNGG 5 cut(s) 72, 84, 168, 293, 350
BseLI CCNNNNNNNGG 6 cut(s) 279, 298, 470, 592, 596, 779
BseMI GCAATG 2 cut(s) 398, 489
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 25, 538
BseRI GAGGAG 4 cut(s) 306, 309, 312, 555
BseX3I CGGCCG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 431, 434
BseYI CCCAGC 1 cut(s) 520
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 6 cut(s) 71, 134, 249, 272, 737, 772
BshNI GGYRCC 2 cut(s) 367, 373
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 7 cut(s) 159, 236, 365, 371, 404, 716, 734
BslFI GGGAC 2 cut(s) 424, 698
BslI CCNNNNNNNGG 6 cut(s) 279, 298, 470, 592, 596, 779
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 424, 698
BsnI GGCC 6 cut(s) 71, 134, 249, 272, 737, 772
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 105, 286
Bsp143I GATC 3 cut(s) 123, 164, 776
BspACI CCGC 4 cut(s) 206, 250, 289, 693
BspANI GGCC 6 cut(s) 71, 134, 249, 272, 737, 772
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 369, 375, 714
BspMI ACCTGC 3 cut(s) 385, 676, 686
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 2 cut(s) 367, 373
BsrDI GCAATG 2 cut(s) 398, 489
BsrFI RCCGGY 5 cut(s) 158, 235, 364, 370, 733
BsrI ACTGG 2 cut(s) 25, 538
BssAI RCCGGY 5 cut(s) 158, 235, 364, 370, 733
BssECI CCNNGG 5 cut(s) 72, 84, 168, 293, 350
BssMI GATC 3 cut(s) 123, 164, 776
BssNI GRCGYC 2 cut(s) 228, 368
BssT1I CCWWGG 4 cut(s) 84, 168, 293, 350
Bst2UI CCWGG 2 cut(s) 73, 269
Bst4CI ACNGT 4 cut(s) 119, 530, 712, 767
BstACI GRCGYC 2 cut(s) 228, 368
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 69, 220, 286, 372
BstDEI CTNAG 2 cut(s) 95, 210
BstEII GGTNACC 1 cut(s) 663
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 3 cut(s) 126, 167, 779
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 123, 164, 776
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 3 cut(s) 206, 215, 743
BstNI CCWGG 2 cut(s) 73, 269
BstPAI GACNNNNGTC 2 cut(s) 50, 352
BstPI GGTNACC 1 cut(s) 663
BstSCI CCNGG 4 cut(s) 71, 267, 402, 714
BstV1I GCAGC 2 cut(s) 431, 434
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 123, 164
BstYI RGATCY 2 cut(s) 123, 164
BstZI CGGCCG 1 cut(s) 247
BsuI GTATCC 2 cut(s) 467, 518
BsuRI GGCC 6 cut(s) 71, 134, 249, 272, 737, 772
BtrI CACGTC 1 cut(s) 703
BveI ACCTGC 3 cut(s) 385, 676, 686
Cac8I GCNNGC 4 cut(s) 69, 220, 286, 372
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 370
Cfr10I RCCGGY 5 cut(s) 158, 235, 364, 370, 733
Cfr13I GGNCC 3 cut(s) 347, 599, 712
CseI GACGC 1 cut(s) 236
Csp6I GTAC 6 cut(s) 115, 397, 431, 531, 574, 622
CviAII CATG 2 cut(s) 547, 724
CviQI GTAC 6 cut(s) 115, 397, 431, 531, 574, 622
DdeI CTNAG 2 cut(s) 95, 210
DinI GGCGCC 1 cut(s) 369
DpnI GATC 3 cut(s) 125, 166, 778
DpnII GATC 3 cut(s) 123, 164, 776
EaeI YGGCCR 2 cut(s) 247, 770
EagI CGGCCG 1 cut(s) 247
EclXI CGGCCG 1 cut(s) 247
Eco130I CCWWGG 4 cut(s) 84, 168, 293, 350
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 3 cut(s) 347, 599, 712
Eco52I CGGCCG 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 222
Eco72I CACGTG 1 cut(s) 388
Eco88I CYCGRG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 663
EcoO65I GGTNACC 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 71, 267
EcoT14I CCWWGG 4 cut(s) 84, 168, 293, 350
EcoT38I GRGCYC 1 cut(s) 286
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
ErhI CCWWGG 4 cut(s) 84, 168, 293, 350
FaeI CATG 2 cut(s) 550, 727
FaiI YATR 8 cut(s) 359, 471, 503, 548, 579, 593, 654, 725
FaqI GGGAC 2 cut(s) 424, 698
FatI CATG 2 cut(s) 546, 723
Fnu4HI GCNGC 5 cut(s) 207, 250, 289, 420, 423
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 5 cut(s) 207, 250, 289, 420, 423
FspBI CTAG 1 cut(s) 294
GlaI GCGC 1 cut(s) 369
GluI GCNGC 5 cut(s) 207, 250, 289, 420, 423
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 6 cut(s) 71, 134, 249, 272, 737, 772
HapII CCGG 7 cut(s) 159, 236, 365, 371, 404, 716, 734
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 370
Hin1I GRCGYC 2 cut(s) 228, 368
Hin1II CATG 2 cut(s) 550, 727
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 79, 412
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 7 cut(s) 159, 236, 365, 371, 404, 716, 734
HphI GGTGA 5 cut(s) 131, 148, 354, 434, 632
Hpy166II GTNNAC 2 cut(s) 22, 574
Hpy188I TCNGA 3 cut(s) 62, 96, 148
Hpy188III TCNNGA 2 cut(s) 184, 780
Hpy8I GTNNAC 2 cut(s) 22, 574
Hpy99I CGWCG 2 cut(s) 62, 707
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 4 cut(s) 119, 530, 712, 767
HpyCH4IV ACGT 4 cut(s) 18, 188, 387, 702
HpyCH4V TGCA 4 cut(s) 264, 380, 391, 494
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 215, 743
HpyF3I CTNAG 2 cut(s) 95, 210
HpySE526I ACGT 4 cut(s) 18, 188, 387, 702
Hsp92I GRCGYC 2 cut(s) 228, 368
Hsp92II CATG 2 cut(s) 550, 727
HspAI GCGC 1 cut(s) 368
KasI GGCGCC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 370
KroNI GCCGGC 1 cut(s) 372
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 123, 164, 776
LmnI GCTCC 1 cut(s) 751
Lsp1109I GCAGC 2 cut(s) 431, 434
LweI GCATC 2 cut(s) 457, 603
MaeI CTAG 1 cut(s) 294
MaeII ACGT 4 cut(s) 18, 188, 387, 702
MaeIII GTNAC 5 cut(s) 184, 360, 542, 663, 698
MalI GATC 3 cut(s) 125, 166, 778
MboI GATC 3 cut(s) 123, 164, 776
MboII GAAGA 2 cut(s) 46, 670
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 2 cut(s) 123, 164
MhlI GDGCHC 2 cut(s) 105, 286
MluCI AATT 2 cut(s) 674, 741
Mly113I GGCGCC 1 cut(s) 368
MlyI GAGTC 2 cut(s) 73, 406
MmeI TCCRAC 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 370
MseI TTAA 2 cut(s) 21, 793
MslI CAYNNNNRTG 1 cut(s) 611
MspI CCGG 7 cut(s) 159, 236, 365, 371, 404, 716, 734
MspR9I CCNGG 4 cut(s) 73, 269, 404, 716
MunI CAATTG 1 cut(s) 741
MvaI CCWGG 2 cut(s) 73, 269
MwoI GCNNNNNNNGC 3 cut(s) 206, 215, 743
NaeI GCCGGC 1 cut(s) 372
NarI GGCGCC 1 cut(s) 368
NciI CCSGG 2 cut(s) 404, 716
NdeII GATC 3 cut(s) 123, 164, 776
NgoMIV GCCGGC 1 cut(s) 370
NlaIII CATG 2 cut(s) 550, 727
NlaIV GGNNCC 3 cut(s) 369, 375, 714
NmuCI GTSAC 3 cut(s) 184, 360, 698
PaqCI CACCTGC 1 cut(s) 385
PdiI GCCGGC 1 cut(s) 372
PflMI CCANNNNNTGG 2 cut(s) 470, 592
PkrI GCNGC 5 cut(s) 208, 251, 290, 421, 424
PleI GAGTC 2 cut(s) 73, 406
PluTI GGCGCC 1 cut(s) 371
PmaCI CACGTG 1 cut(s) 388
PmlI CACGTG 1 cut(s) 388
PpsI GAGTC 2 cut(s) 73, 406
Ppu21I YACGTR 1 cut(s) 388
PshAI GACNNNNGTC 2 cut(s) 50, 352
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 71, 267
PspCI CACGTG 1 cut(s) 388
PspEI GGTNACC 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 2 cut(s) 71, 267
PspN4I GGNNCC 3 cut(s) 369, 375, 714
PspPI GGNCC 3 cut(s) 347, 599, 712
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 123, 164
RsaI GTAC 6 cut(s) 116, 398, 432, 532, 575, 623
RsaNI GTAC 6 cut(s) 115, 397, 431, 531, 574, 622
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 2 cut(s) 21, 793
SatI GCNGC 5 cut(s) 207, 250, 289, 420, 423
Sau3AI GATC 3 cut(s) 123, 164, 776
Sau96I GGNCC 3 cut(s) 347, 599, 712
ScaI AGTACT 1 cut(s) 532
SchI GAGTC 2 cut(s) 73, 406
ScrFI CCNGG 4 cut(s) 73, 269, 404, 716
SduI GDGCHC 2 cut(s) 105, 286
SfaNI GCATC 2 cut(s) 457, 603
SfoI GGCGCC 1 cut(s) 369
SgrAI CRCCGGYG 1 cut(s) 364
SinI GGWCC 3 cut(s) 347, 599, 712
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 567
SmoI CTYRAG 1 cut(s) 567
Sse9I AATT 2 cut(s) 674, 741
SsiI CCGC 4 cut(s) 206, 250, 289, 693
SspDI GGCGCC 1 cut(s) 367
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 71, 267, 402, 714
StyI CCWWGG 4 cut(s) 84, 168, 293, 350
TaaI ACNGT 4 cut(s) 119, 530, 712, 767
TaiI ACGT 4 cut(s) 21, 191, 390, 705
TaqI TCGA 1 cut(s) 108
TasI AATT 2 cut(s) 674, 741
TatI WGTACW 1 cut(s) 530
TauI GCSGC 3 cut(s) 209, 252, 291
Tru1I TTAA 2 cut(s) 21, 793
Tru9I TTAA 2 cut(s) 21, 793
TseFI GTSAC 3 cut(s) 184, 360, 698
TseI GCWGC 2 cut(s) 419, 422
Tsp45I GTSAC 3 cut(s) 184, 360, 698
TspDTI ATGAA 2 cut(s) 428, 563
Van91I CCANNNNNTGG 2 cut(s) 470, 592
VpaK11BI GGWCC 3 cut(s) 347, 599, 712
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 593
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 1 cut(s) 294
ZrmI AGTACT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.