Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001936

Physical Location & Seq

Genomic Coordinates Forward (+)

17303464 .. 17305285

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGAATCAGAGAGACAACGACTGCGATCACAAGCGACAAGAACGCAAAGGACAGGCCCTTGTACCTTCGGATTGGCGAGGGTGATTCGTCGGTATGGTTTGTAATCGAGGATAAACGCAAGGAACAACAACGAGAAGAAGATGATGAAATAATCTTCCGTCGACTTGATCTTCCCCAGTTAGGTTACCAGCGCTTTCTTGACAGCCTTGTGGTCCTCAACTCCAAATTGTACCTGATCGGTGGTACTAAAATCAATTTGAATAAACCTACCTGTCCGGTACCTGTTGGGGAACCCGTCAGGGAATACGAGTACTTGAACTTGCAAGAGAGGAGGCTGCGGTGGCGCCGCCAGCCCTTTCGTCGATTTCTTTACACTCAGCACCTTGCTTCCTGCAAAGACGGTTTGATCTATGGCTTGGGACCTCAATCTCACGTTATCGATCCTGCTCTCCGCTTTGGTGTCATCCACACTGACCTGCCTAAAATCCCTGGAGAATATGGTCATTCCCCACAGCCGCTTGCTATTTCTAAGAACAAGATTTATGCCTATTCCCGCGGAGGTGTCTACCCTAATCTCCAGCATTATTTGTTTAGTTATGATATGGAAGAGAAAACGTGGGAGTGCATCTTTAAAAATTTCTGGGGTGACTGGGCCACTGGAGTAGTGCTTTCCGGAGACTCCTACTTAATAGCATATGGCTCAAGACATCCCATTGAATGGAAGAAGGACAGGCCTGGTGTATGGGTTTTTGATATTCACCGGCGTCAATGGCTTGATGAACCAGTTAAGGGCCTTGATGAGGCACTTCCGGTTATCCCAGACTGGGTCTATGAGGAATTGGGATACGTTCACGTGTACTACCTACCACGCTTGTTCGAGATTGGAAAGCACAGGTTTGCTCTGATTTGGGAGGAATCAGATGATGAGAGTTATAATGAGAGTTATACGCTTCATTGCCACAAATTCACATTGCAGGCGCCTACCTCCACGGATCAACCCTTTGTTGCTCGACAACTCTCAAATAAAGTCAAGACTCTCAATGGCGGCAACAACAAAATACTCGGTTGCACTGTTGGATTGGAATCTGAACAAGGAAGAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

43.0

Weight (kDa)

6.29

Isoelectric Point (pI)

59.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001936)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42220 FvH4_6g42281 FvH4_6g42282 FvH4_7g21671 FvH4_7g21681 FvH4_7g21682 FvH4_7g21710 FvH4_7g21720 FvH4_7g21730
rosa_chinensis	RchiOBHm_Chr5g0049591
rosa_laevigata	RLG00000024762 RLG00000027150 RLG00000027154 RLG00000027379
rosa_multiflora	Rmu_sc0006326.1_g000047
rosa_roxburghii	Rroxscaffold_1G00032750 Rroxscaffold_4G00290670 Rroxscaffold_4G00290690
rosa_rugosa	Rorug01G0348300 Rorug01G0348400
rosa_samantha	Rh1BG295200 Rh1BG295300 Rh1BG318500 Rh1BG318600 Rh1BG319100 Rh1CG233300 Rh1CG312000 Rh1CG333100 Rh1DG327600 Rh1DG349300 Rh1DG349400 Rh1DG349800 Rh5BG336800 Rh5CG361600 Rh5DG349000
rosa_wichuraiana	Rw1G021860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
Acc36I	ACCTGC	1 cut(s)	486
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	3 cut(s)	280, 345, 979
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccI	GTMKAC	2 cut(s)	163, 567
AccII	CGCG	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	674
AciI	CCGC	7 cut(s)	340, 349, 454, 518, 556, 558, 1047
AclWI	GGATC	2 cut(s)	437, 1002
AcsI	RAATTY	2 cut(s)	637, 965
AcvI	CACGTG	1 cut(s)	856
AcyI	GRCGYC	3 cut(s)	346, 766, 980
AfaI	GTAC	6 cut(s)	65, 233, 247, 282, 314, 860
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	5 cut(s)	182, 720, 791, 802, 826
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	3 cut(s)	262, 319, 719
AjnI	CCWGG	2 cut(s)	490, 736
Alw26I	GTCTC	2 cut(s)	8, 672
AlwI	GGATC	2 cut(s)	437, 1002
Aor13HI	TCCGGA	1 cut(s)	674
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	4 cut(s)	56, 654, 734, 793
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	2 cut(s)	637, 965
Asp718I	GGTACC	1 cut(s)	280
AspLEI	GCGC	3 cut(s)	195, 348, 982
AspS9I	GGNCC	5 cut(s)	57, 214, 422, 654, 793
AsuHPI	GGTGA	3 cut(s)	95, 659, 752
AvaII	GGWCC	2 cut(s)	214, 422
BanI	GGYRCC	3 cut(s)	280, 345, 979
BbrPI	CACGTG	1 cut(s)	856
BbvI	GCAGC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	492, 738
BciVI	GTATCC	1 cut(s)	839
BcoDI	GTCTC	2 cut(s)	8, 672
BfoI	RGCGCY	3 cut(s)	196, 349, 983
BfuAI	ACCTGC	1 cut(s)	486
BfuI	GTATCC	1 cut(s)	839
BisI	GCNGC	4 cut(s)	338, 349, 518, 1048
BlsI	GCNGC	4 cut(s)	339, 350, 519, 1049
BmcAI	AGTACT	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	492, 738
Bme18I	GGWCC	2 cut(s)	214, 422
BmgT120I	GGNCC	5 cut(s)	57, 214, 422, 654, 793
BmiI	GGNNCC	5 cut(s)	282, 294, 347, 423, 981
BmrFI	CCNGG	2 cut(s)	492, 738
BmrI	ACTGGG	3 cut(s)	172, 661, 835
BmsI	GCATC	1 cut(s)	636
BmuI	ACTGGG	3 cut(s)	172, 661, 835
BpmI	CTGGAG	3 cut(s)	513, 563, 681
BpuEI	CTTGAG	1 cut(s)	688
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	856
BsaBI	GATNNNNATC	1 cut(s)	1084
BsaHI	GRCGYC	3 cut(s)	346, 766, 980
BsaJI	CCNNGG	3 cut(s)	490, 556, 990
BsaWI	WCCGGW	3 cut(s)	277, 674, 811
Bsc4I	CCNNNNNNNGG	5 cut(s)	182, 720, 791, 802, 826
Bse118I	RCCGGY	1 cut(s)	762
Bse1I	ACTGG	5 cut(s)	178, 656, 664, 785, 830
Bse3DI	GCAATG	2 cut(s)	955, 971
Bse8I	GATNNNNATC	1 cut(s)	1084
BseAI	TCCGGA	1 cut(s)	674
BseBI	CCWGG	2 cut(s)	492, 738
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	490, 556, 990
BseGI	GGATG	2 cut(s)	465, 709
BseJI	GATNNNNATC	1 cut(s)	1084
BseLI	CCNNNNNNNGG	5 cut(s)	182, 720, 791, 802, 826
BseMI	GCAATG	2 cut(s)	955, 971
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	5 cut(s)	178, 656, 664, 785, 830
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	324
Bsh1236I	CGCG	1 cut(s)	558
BshFI	GGCC	4 cut(s)	58, 656, 736, 795
BshNI	GGYRCC	3 cut(s)	280, 345, 979
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	4 cut(s)	278, 675, 763, 812
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	5 cut(s)	182, 720, 791, 802, 826
BsmAI	GTCTC	2 cut(s)	8, 672
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	4 cut(s)	58, 656, 736, 795
Bsp13I	TCCGGA	1 cut(s)	674
Bsp143I	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
BspACI	CCGC	7 cut(s)	340, 349, 454, 518, 556, 558, 1047
BspANI	GGCC	4 cut(s)	58, 656, 736, 795
BspCNI	CTCAG	1 cut(s)	391
BspDI	ATCGAT	1 cut(s)	441
BspEI	TCCGGA	1 cut(s)	674
BspFNI	CGCG	1 cut(s)	558
BspLI	GGNNCC	5 cut(s)	282, 294, 347, 423, 981
BspMI	ACCTGC	1 cut(s)	486
BspPI	GGATC	2 cut(s)	437, 1002
BspT107I	GGYRCC	3 cut(s)	280, 345, 979
BsrDI	GCAATG	2 cut(s)	955, 971
BsrFI	RCCGGY	1 cut(s)	762
BsrI	ACTGG	5 cut(s)	178, 656, 664, 785, 830
BssAI	RCCGGY	1 cut(s)	762
BssECI	CCNNGG	3 cut(s)	490, 556, 990
BssMI	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
BssNI	GRCGYC	3 cut(s)	346, 766, 980
Bst2UI	CCWGG	2 cut(s)	492, 738
Bst4CI	ACNGT	2 cut(s)	404, 1075
Bst6I	CTCTTC	2 cut(s)	603, 1093
BstACI	GRCGYC	3 cut(s)	346, 766, 980
BstBAI	YACGTR	1 cut(s)	856
BstC8I	GCNNGC	3 cut(s)	353, 522, 978
BstDEI	CTNAG	2 cut(s)	378, 531
BstDSI	CCRYGG	2 cut(s)	556, 990
BstEII	GGTNACC	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstF5I	GGATG	2 cut(s)	465, 709
BstFNI	CGCG	1 cut(s)	558
BstH2I	RGCGCY	3 cut(s)	196, 349, 983
BstHHI	GCGC	3 cut(s)	195, 348, 982
BstKTI	GATC	6 cut(s)	30, 172, 240, 411, 445, 997
BstMAI	GTCTC	2 cut(s)	8, 672
BstMBI	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	343, 352, 772
BstNI	CCWGG	2 cut(s)	492, 738
BstPI	GGTNACC	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	490, 736
BstUI	CGCG	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	324
Bsu15I	ATCGAT	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	58, 656, 736, 795
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	2 cut(s)	556, 990
BtsCI	GGATG	2 cut(s)	465, 709
BtsIMutI	CAGTG	3 cut(s)	471, 657, 1071
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	3 cut(s)	353, 522, 978
CfoI	GCGC	3 cut(s)	195, 348, 982
Cfr10I	RCCGGY	1 cut(s)	762
Cfr13I	GGNCC	5 cut(s)	57, 214, 422, 654, 793
Cfr42I	CCGCGG	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	1 cut(s)	755
Csp6I	GTAC	6 cut(s)	64, 232, 246, 281, 313, 859
CviQI	GTAC	6 cut(s)	64, 232, 246, 281, 313, 859
DdeI	CTNAG	2 cut(s)	378, 531
DinI	GGCGCC	2 cut(s)	347, 981
DpnI	GATC	6 cut(s)	29, 171, 239, 410, 444, 996
DpnII	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
DraI	TTTAAA	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	603, 1093
EarI	CTCTTC	2 cut(s)	603, 1093
Eco147I	AGGCCT	1 cut(s)	736
Eco47I	GGWCC	2 cut(s)	214, 422
Eco47III	AGCGCT	1 cut(s)	194
Eco72I	CACGTG	1 cut(s)	856
Eco91I	GGTNACC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoO109I	RGGNCCY	3 cut(s)	57, 422, 793
EcoO65I	GGTNACC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	490, 736
EgeI	GGCGCC	2 cut(s)	347, 981
EheI	GGCGCC	2 cut(s)	347, 981
FaqI	GGGAC	1 cut(s)	435
FauI	CCCGC	1 cut(s)	563
FauNDI	CATATG	1 cut(s)	697
FblI	GTMKAC	2 cut(s)	163, 567
Fnu4HI	GCNGC	4 cut(s)	338, 349, 518, 1048
FokI	GGATG	2 cut(s)	452, 696
Fsp4HI	GCNGC	4 cut(s)	338, 349, 518, 1048
GlaI	GCGC	3 cut(s)	194, 347, 981
GluI	GCNGC	4 cut(s)	338, 349, 518, 1048
GsuI	CTGGAG	3 cut(s)	513, 563, 681
HaeII	RGCGCY	3 cut(s)	196, 349, 983
HaeIII	GGCC	4 cut(s)	58, 656, 736, 795
HapII	CCGG	4 cut(s)	278, 675, 763, 812
HgaI	GACGC	1 cut(s)	755
HhaI	GCGC	3 cut(s)	195, 348, 982
Hin1I	GRCGYC	3 cut(s)	346, 766, 980
Hin6I	GCGC	3 cut(s)	193, 346, 980
HinP1I	GCGC	3 cut(s)	193, 346, 980
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HinfI	GANTC	6 cut(s)	6, 86, 680, 917, 1036, 1085
HpaII	CCGG	4 cut(s)	278, 675, 763, 812
HphI	GGTGA	3 cut(s)	95, 659, 752
Hpy166II	GTNNAC	4 cut(s)	164, 568, 853, 859
Hpy188I	TCNGA	5 cut(s)	11, 72, 906, 922, 1090
Hpy188III	TCNNGA	5 cut(s)	200, 675, 705, 880, 1033
Hpy8I	GTNNAC	4 cut(s)	164, 568, 853, 859
Hpy99I	CGWCG	3 cut(s)	94, 165, 366
HpyAV	CCTTC	2 cut(s)	77, 721
HpyCH4III	ACNGT	2 cut(s)	404, 1075
HpyCH4IV	ACGT	4 cut(s)	435, 617, 849, 855
HpyCH4V	TGCA	5 cut(s)	325, 396, 627, 976, 1071
HpyF10VI	GCNNNNNNNGC	3 cut(s)	343, 352, 772
HpyF3I	CTNAG	2 cut(s)	378, 531
HpySE526I	ACGT	4 cut(s)	435, 617, 849, 855
Hsp92I	GRCGYC	3 cut(s)	346, 766, 980
HspAI	GCGC	3 cut(s)	193, 346, 980
KasI	GGCGCC	2 cut(s)	345, 979
Kpn2I	TCCGGA	1 cut(s)	674
KpnI	GGTACC	1 cut(s)	284
KspI	CCGCGG	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	1 cut(s)	636
MaeII	ACGT	4 cut(s)	435, 617, 849, 855
MaeIII	GTNAC	2 cut(s)	185, 647
MalI	GATC	6 cut(s)	29, 171, 239, 410, 444, 996
MboI	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
MboII	GAAGA	7 cut(s)	148, 149, 152, 164, 620, 736, 1110
MluCI	AATT	5 cut(s)	227, 256, 637, 839, 965
Mly113I	GGCGCC	2 cut(s)	346, 980
MlyI	GAGTC	2 cut(s)	674, 1030
MmeI	TCCRAC	1 cut(s)	1057
MroI	TCCGGA	1 cut(s)	674
MseI	TTAA	3 cut(s)	633, 689, 789
MspA1I	CMGCKG	1 cut(s)	558
MspI	CCGG	4 cut(s)	278, 675, 763, 812
MspR9I	CCNGG	2 cut(s)	492, 738
MvaI	CCWGG	2 cut(s)	492, 738
MvnI	CGCG	1 cut(s)	558
MwoI	GCNNNNNNNGC	3 cut(s)	343, 352, 772
NarI	GGCGCC	2 cut(s)	346, 980
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
NlaIV	GGNNCC	5 cut(s)	282, 294, 347, 423, 981
NmuCI	GTSAC	1 cut(s)	647
PceI	AGGCCT	1 cut(s)	736
PfeI	GAWTC	4 cut(s)	6, 86, 917, 1085
PflFI	GACNNNGTC	1 cut(s)	827
PflMI	CCANNNNNTGG	1 cut(s)	720
PkrI	GCNGC	4 cut(s)	339, 350, 519, 1049
PleI	GAGTC	2 cut(s)	674, 1030
PluTI	GGCGCC	2 cut(s)	349, 983
PmaCI	CACGTG	1 cut(s)	856
PmlI	CACGTG	1 cut(s)	856
PpsI	GAGTC	2 cut(s)	674, 1030
Ppu21I	YACGTR	1 cut(s)	856
PpuMI	RGGWCCY	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	490, 736
PspCI	CACGTG	1 cut(s)	856
PspEI	GGTNACC	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	490, 736
PspN4I	GGNNCC	5 cut(s)	282, 294, 347, 423, 981
PspPI	GGNCC	5 cut(s)	57, 214, 422, 654, 793
PspPPI	RGGWCCY	1 cut(s)	422
PsyI	GACNNNGTC	1 cut(s)	827
RsaI	GTAC	6 cut(s)	65, 233, 247, 282, 314, 860
RsaNI	GTAC	6 cut(s)	64, 232, 246, 281, 313, 859
SacII	CCGCGG	1 cut(s)	559
SalI	GTCGAC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	633, 689, 789
SatI	GCNGC	4 cut(s)	338, 349, 518, 1048
Sau3AI	GATC	6 cut(s)	27, 169, 237, 408, 442, 994
Sau96I	GGNCC	5 cut(s)	57, 214, 422, 654, 793
ScaI	AGTACT	1 cut(s)	314
SchI	GAGTC	2 cut(s)	674, 1030
ScrFI	CCNGG	2 cut(s)	492, 738
SfaNI	GCATC	1 cut(s)	636
SfoI	GGCGCC	2 cut(s)	347, 981
Sfr303I	CCGCGG	1 cut(s)	559
SgrAI	CRCCGGYG	1 cut(s)	762
SgrBI	CCGCGG	1 cut(s)	559
SinI	GGWCC	2 cut(s)	214, 422
SmlI	CTYRAG	1 cut(s)	703
SmoI	CTYRAG	1 cut(s)	703
Sse9I	AATT	5 cut(s)	227, 256, 637, 839, 965
SseBI	AGGCCT	1 cut(s)	736
SsiI	CCGC	7 cut(s)	340, 349, 454, 518, 556, 558, 1047
SspDI	GGCGCC	2 cut(s)	345, 979
StuI	AGGCCT	1 cut(s)	736
StyD4I	CCNGG	2 cut(s)	490, 736
TaaI	ACNGT	2 cut(s)	404, 1075
TaiI	ACGT	4 cut(s)	438, 620, 852, 858
TaqI	TCGA	6 cut(s)	108, 163, 364, 441, 879, 1012
TasI	AATT	5 cut(s)	227, 256, 637, 839, 965
TatI	WGTACW	2 cut(s)	312, 858
TauI	GCSGC	3 cut(s)	351, 520, 1050
TfiI	GAWTC	4 cut(s)	6, 86, 917, 1085
Tru1I	TTAA	3 cut(s)	633, 689, 789
Tru9I	TTAA	3 cut(s)	633, 689, 789
TscAI	CASTG	3 cut(s)	478, 664, 1078
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	162, 795, 944
TspGWI	ACGGA	2 cut(s)	149, 1007
TspRI	CASTG	3 cut(s)	478, 664, 1078
Tth111I	GACNNNGTC	1 cut(s)	827
Van91I	CCANNNNNTGG	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	214, 422
XagI	CCTNNNNNAGG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	637, 965
XmiI	GTMKAC	2 cut(s)	163, 567
ZrmI	AGTACT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.